Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            ----------->GT1                        --------->ICU4                                   ------->MYC3                    --------->ZAT18                                      <-------MYC3    --------->ZAT14    <---------YAB1  --------->ZAT14  <---------HSFB2a(2)     <---------ZAT14             <---------ZAT14   <-----------HVH21<---------ZAT14  --------->HSFB2a(2)     --------->ZAT14    --------->TOE2(3)   gccactgtcattgatgcttaagagcactgatgaagagttcgagcagttgctcacaaacccctcttcagtggcaaacgtgtaacatttattgtatagtggt  14585300                                                                                                    <                                                                                            <-------MYC3                                                                                            ---------                                     ----------->GT1                                        ------->MYC3                                ------->TEIL                                               --------->O2                              --------->ZAT18                                              <---------TGA1a                              <---------ZAT18                                              <---------O2                              <---------ZAT14                                              --------->TGA1a                              --------->ZAT14                                       <----------DOF2 <                             <---------ANAC58               <------MYB46(1)         =================bZIP_DOF        <---------ANAC58     <---------ANAC46               ----------->GT1<---------MYB46(3) -------        <---------ANAC58     <---------ANAC58  --------->AHL20(2)          --------->MYB52(2)--------       --------->ATHB12    <---------ANAC46   --------->AHL20(2)          <---------TOE1(2)==========  <---------YAB1      <----------DOF2<---------ANAC46       <------MYB83 <---------MYB52(1)==========   gaatgttattgattgtgttcatagctttgttgtgtacttgtgtaaaaaataaaaaatcaatttggtgaaatattcgtttgtttcaactttcaaacgtggg  14585400                                                                            --------->AHL20(2)                                                                       <---------YAB1          -------->ATHB1                                              --------->AHL20(2)   --------->ALFIN1                                                  <---------AHL20(2)   <---------ANAC46  --------->DAG2                            --------->ANAC58 ---------TOE2(3)   ---------->DOF2                            --------->ANAC58 --------->AHL20(2) >TOE1(2) --------->ATHB12                      --------->ATHB12    --------->AHL20(2) ---------TOE1(3) <----------DOF2 <---------STY1(2)   <---------LBD16--------->AHL20(2) -->ZAT18 --------->ATHB51 <---------PCF2      <---------YAB1  --------->ANAC46 <---------AHL20(2) ->ALFIN1<---------YAB1 --------->ALFIN1    <---------AHL20(2) --------->ANAC55(2) ============================bZIP_DOF      --------->AHL20(2)<-----------GT1<---------AHL20(2)   ---- ============================bZIP_DOF  <------ZmHOX2a(1)  <----------DOF2  --------->AHL20(2) <------   ctaaggtgtgtattattgggcttaaagtgggcctcttgctaggaattttatgatttcgcggttttacgaaattaatataaaattaaaaatagcattaaac  14585500                                <XXXXXXXXXXXXXXXXXXXXMIR417                               ----------->GT1                               <------MYB83                               <------MYB46(1)                               <---------ANAC46                              --------->MYB55(2)             --------->ANAC58 <---------MYB46(3)             --------->At5g28300             --------->ANAC58<---------MYB55(1)     --------->ANAC58        --------->LBD16     <---------MYB52(1)      --------->ANAC58           <-----------GT1      <-----------RAV1(2) <---------ANAC58          ----------->GT1            <---------AHL20(2)  <------ZmHOX2a(1)    --------->DAG2        --------->TOE1(3)        --------->At5g28300          <- ----->TOE2(3)       ---------->DOF2   <-----------GT1      ----------->GT1 <---------ICU4         <- -----GT1<------ZmHOX2a(1)<---------ANAC58   --------->TOE2(3)       ----------->GT1       <---------AtLEC2   ctcaggactcaggagaagccctaaaaaggcgttgggtaaattgactaccttagcaagtaaaacagtaaaaactgtgaatatttacttacattttcatggc  14585600                                                     --------->HSFB2a(2)                                                <---------ANAC58                                                <---------ANAC58                                             <---------DEAR3(1)                                     <                                            <------NtERF2                                          <-                                            --------->ATERF1(1)                                   ---                                            <---------At4g35610                                   <--                                            <-------GAMYB                                         <--                                            --------->At4g35610                                   ---                           <---------ANAC58 <---------ZAT2                                        <--                           <---------ANAC55(2) <------NtERF2                                      ---                           <---------ANAC46 --------->ZAT2                                        ---                           <---------ANAC58<---------RAP2.3(1)                                   <---                     <---------AHL20(2)    <---------DEAR3(2)                                    ----                     <---------AHL20(1)    <---------ATERF1(1)                                   <---           <-----------TGA1----------->GT1<---------RAP2.6(2)                                    <---   <-------TEIL  --------->AHL20(2)  ------>ZmHOX2a(1)             ---------->ID1          <-------TEIL  <---------ARR14(2) --------->AHL20(1)   <---------DEAR3(1)    <-------TEIL             <---------ARR14(2)  --------->ARR14(2) --------->AHL20(2)   --------->ZAT18    <---------ANAC58            --------->ARR14(2) --------TOE1(3) <---------AHL20(2)  --------->LBD16 <---------HSFB2a(2) <<<<<<<<<TBF1   <---------GLK1(2) --------TOE2(3)--------->AHL20(2) ----------->RAV1(2)       <---------ANAC58 <----------DOF2--------   tgaggttcgtcttcgtcatttaataaatttcgtaaattcctgagtcggctgcgttctcgacttgggttcgtcttcttcttctttctattcagattcacaa  14585700         --------->ZAT18      --------->ANAC58      --------->ANAC58 ---------WOX13(1) -----------CBF ----->ATHB1                                                                                <-------- ----------ATHB5                                                                            --------- ------ATHB1                                                                           <---------LBD16 ------>ATHB51                                                                        <---------ANAC58 -------ICU4                                                                          <---------ANAC58 ------>ATHB12                                                                        <---------ANAC46 ------>YAB1                                                                     --------->ALFIN1 ------ATHB51                            ------>ZmHOX2a(1)                       <-----------RAV1(1) ----->ICU4                         <----------DOF2              ----------->GT1 <---------ZAT6 ------YAB1               <----------DOF2==================HOX2a_HOX2a         <---------ANAC46 ------ATHB12         ----------------->AGL1        <------ZmHOX2a(2)         <------ZmHOX2a(1) ---->CBF*TSS     <----------DOF2<-----------GT1    =================================HOX2a_HOX2a   taattgccaagcgaacaagtctttgcctctttggtttactttcctctgttttcgatccatttagaaaatgttattcacgaggagtgttgctcggatttct  14585800                                                                       --------->LBD16                                                                      ----------------->AGL1                                                                      <---------HSFB2a(2)                                                                     <-----------------AGL1                                                                 -------->ATHB1                                                                 --------->YAB1                                                                 <---------ICU4                                                                 <------------ATHB5                                                                <---------ATHB12                                                                --------->ICU4                                                              --------->WOX13(1)                    <                   --------->HSFC1(2)                      --------->ANAC58                         <    --------->GLK1(2)                                      --------->ANAC58    <-----------HVH21   <- -GLK1(1)          <---------HSFC1(2)                  <---------DEAR3(2) <------ZmHOX2a(2)        <- >GLK1(1)   <---------ARR14(2)   ------>ZmHOX2a(1)     <---------MYB46(3)<-----------HVH21         <-   tctaagtttctgagaaaccgtagcttctatggctcctctcaatctctcgcctctcatcggttcgcaatcattcccgatcagggtcactcttgttctgact  14585900                                                                                    --------->ALFIN1               <-----------GT1                                                  <---------ZAT14              <---------AHL20(2)                                                --------->ZAT14             --------->YAB1                                                    <-----------RAV1(1)       ----------->GT1                                                       <---------ANAC58  --------->ANAC58                                                      --------->ATHB12  --------->ANAC46                              <---------AHL20(1)      <---------ICU4  --------->ANAC58                              --------->ARR11(3)     --------->ICU4 ---------------AGL15                           <---------ARR11(3)     <---------YAB1 ---------ALFIN1 <---------TOE2(3)              --------->AHL20(1)   --------->YAB1 <---------ANAC46 --------REM1(2)<-----------GT1            ----------->GT1          <---------YAB1<---------ANAC46 ----------------AGL1                    <---------ANAC46  <---------TOE2(3) <---------ANAC58 ----------------AG                      ----------->GT1   <---------TOE1(3) <---------ANAC46   ctccacacaaggtaattttaacattttctcttgtgcctatgtagcgagaaaatattcgattagggtttttctgataattgagtgttgtggggaaattgtt  14586000                                     ------>ZmHOX2a(2)                  <---------YAB1                                   --------->ARR11(3)              <---------ICU4                    --------->At4g35610                            --------->ATHB12        <-----------GT1            <---------ARR11(3)              <--------HAHB4    --------->AHL20(2)           <---------YAB1                    --------->YAB1    <---------AHL20(2)      --------->ARR11(3)  --------->ARR11(3)<---------ATHB12              -----   --------->AHL20(2)       <---------ARR11(3) <---------ICU4     <---------YAB1               <-----   <---------AHL20(2) <---------REM1(1)    --------->ICU4         --------->ICU4    <---------ANAC46   tttttttaaattactctctagcagatgtaagatttatgatctgtgctaattatctcggtttttgtctaatcattaccatggagattgtgtttattcaata  14586100                                           <------MYB46(1)                                           <------MYB83                                         <--------P                                        <---------ANAC58                                        <---------ANAC46                                        <---------ANAC58                                        <-------GAMYB                                       --------->MYB52(2)          <---------AHL20(2)           <---------MYB46(3)    <---------ANAC58                   <------MYB46(1)    <---------ANAC58                   <------MYB83                       <---------bZIP60(1)    <---------ANAC46                  <---------AtMYB61      <----------DOF2   <------NtERF2                     <--------P              <---------DAG2             --------->ARR11(3) --------->ALFIN1         --------->AHL20(2)    ----------->GT1           <---------TGA2(1) ----->DOF2              <---------YAB1--------->MYB55(2)<-----------GT1  --------->bZIP60(1) ----ATHB12    <-----------GT1      <-------GAMYB       <-----------GT1   ----------->GT1      ------   aaggtgtcgtttttattttgcccatctattatttagggagttggttggaattgaaaattttccctttttgtttgtgatgtaattttgtaagacattgtgg  14586200  Previous    Next  AGI:  At2g34620.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G03050.1); similar to mTERF-like protein [Brassica napus] (GB:ABC70867.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 14584253    to: 14585367    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g34630.1    Description:  GPPS/GPS1 (GERANYLPYROPHOSPHATE SYNTHASE); dimethylallyltranstransferase. similar to SPS2 (SOLANESYL DIPHOSPHATE SYNTHASE 2), dimethylallyltranstransferase/ trans-octaprenyltranstransferase [Arabidopsis thaliana] (TAIR:AT1G17050.1); similar to geranylgeranyl diphosphate synthase [Citrus unshiu] (GB:AAN86061.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase (InterPro:IPR008949) Range:  from: 14585709    to: 14588806    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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