Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------------->AGL15                                            <---------------AGL15                                          --------->At4g35610                                 ------->GAMYB                                 --------->TOE2(3)                                 ------->GAMYB  <--              --------->AHL20(2)--------->MYB46(3)                                --------->MYB46(3)              ---------->DOF2  -------->P--------->MYB52(1)          ================================    --------->ANAC58          --------->WOX13(1)                     <------ZmHOX2a(1)           ----    --------->ANAC58        <---------ATHB12------->GAMYB        ---------->DOF2  <---------MYB52(2) -ID1  <----------DOF2--------->AtMYB61<---------ATHB12   <----------DOF2     <---------ATHB12   <---   aaacacaagctttcaataaaacgaccacaaatcaaccacaaatcaactgaaattggcaaacttttacaaaaggatagcaaatcaacaaacaaaactcaag  14575300                                     ======================HOX2a_HOX2a                                   --------->ARR14(2)                               <-----------RAV1(2)                              <------ZmHOX2a(2)                              =============================HOX2a_HOX2a                         <---------ANAC46                       <---------MYB46(3)                       --------->MYB55(2)                      <---------DEAR3(1)                      <---------AtMYB61       <---------LBD16  <------ZmHOX2a(2)   --------->ALFIN1     --------->ATHB51 <-----------HVH21   <---------ABI4(1)    --------->ICU4    <---------TOE2(3)          --------->At4g35610 ----ZmHOX2a(2)    <---------DEAR3(1)------>ZmHOX2a(2) --------->ATHB12       ------->TEIL ====HOX2a_HOX2a  <---------LBD16  <---------ARR14(2) --------->ICU4       --------->ANAC58      <--- ----->ARR11(3)  ========================HOX2a_HOX2a  <---------YAB1       --------->ANAC58      ---- ------ARR11(3)  ------>ZmHOX2a(2)<------ZmHOX2a(1) <------ZmHOX2a(1) <------ZmHOX2a(1)<---------At4g35610   atcgatcagacggacttgatcgcggtggtgggatcaggatcggaattatcgggaggatgattagggatgagaggagcacgaacatcggaagatgagtcga  14575400                                                  --------->ANAC58                                              <-----------HVH21                                              <----------DOF2                                             <---------ANAC58                                             <---------ANAC58                                       <---------ETT(2)                                   ------>ZmHOX2a(2)           --------->ANAC46                                  <------ZmHOX2a(2)            --------->AtLEC2                                 <---------ARR14(2)            --------->ANAC58                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->ANAC58                     <---------LBD16   --------->ETT(2)        --------->ANAC58               --------->YAB1    --------->ARR14(2)           --------->LBD16               ------>ZmHOX2a(2) --------->ARR11(3)          <-----------RAV1(2)  --------->ZAT6             <---------ARR11(3)  <---------ARR11(3)--------->DEAR3(1) <---------ANAC58    <---------MYB52(1)             --------->ARR14(2)  --------->AGP1<---------REM1(2)      <---------ANAC58    --------->DOF5.7(2)             <---------ARR14(2) <---------GLK1(1) --------->ANAC58 --------->ANAC58      --------->TOE2(3)            <------ZmHOX2a(1)   --------->GLK1(1) --------->ANAC46 --------->ANAC58     --------->YAB1 ------O2   =============================HOX2a_HOX2a    <---------ATERF1(1) --------->ANAC46 ----->O2   ==============================HOX2a_HOX2a   <---------ALFIN1    --------->ANAC58   cgtcttggtcatcaggatcgtaatcgggattgagagatctgtcgatggcttcacggcccgactccaggcaaggcttacaagctaactctatcgttatcca  14575500                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                     --------->GLK1(1)                                                     <---------GLK1(1)                                                    --------->ARR11(3)                                          --------->RAP2.3(2)                                          --------->RAP2.6(2)                                          --------->ANAC46                                          <---------ATERF1(2)                                          --------->DEAR3(1)            ------>NtERF2                 --------->RAP2.3(3)            --------->LBD16               --------->RRTF1(2)           <---------ANAC46               --------->DREB2C(2)           <---------RAP2.6(2)            --------->RRTF1(3)          <---------LBD16                 --------->ATERF1(2)          --------->RAP2.6(3)            --------->ERF1       --------->KAN4(2)                 --------->ORA47(2)                                     -----      --------->KAN4(1)                  --------->RAP2.3(1)                                    -----      <---------KAN4(1)     <---------ZAT18------>NtERF2                        ------>NtERF2   -----     <---------YAB1        --------->DEAR3(1)       <---------ARR11(3)    --------->At4g35610  <-----    <---------ARR11(3)   <---------At5g28300<------NtERF2          <----------DOF2 ------>NtERF2-----    <---------GLK1(2) <-----------HVH21 <---------RAP2.3(1)<----------DOF2<---------At4g35610 <------   tcccaagattattccggctattgctatcaccgcgcttgttatcgccgccattgagatctctctttctctctttctcagatgcctccgactctgtattcac  14575600       <---------WRKY18(1)     <---------WOX13(1)                                                                             <    <---------ANAC58                                     <---------ALFIN1                         <--    <---------ANAC58                                   >>>>>>>>>>>>>>>>>LFY              ------>NtERF2    <---------AtLEC2               ----------->GT1    --------->PCF2           <----------DOF2    --- ---->ANAC55(2)               <------ZmHOX2a(1)       --------->ANAC46     --------->KAN4(2)     ---- ---->ANAC58           --------->ATHB51           --------->YAB1         <---------KAN4(2)<------NtERF2 ---->ANAC58           <---------ICU4             <---------ICU4         <---------ARR14(2)  -------- ----LBD16             --------->YAB1            <---------ATHB12        --------->ARR14(2)  -------- ---->ANAC46          <---------ATHB51           <---------ATHB51     <---------ANAC46   <---------DEAR3(2) -----GT1             --------->ICU4           --------->WOX13(1)<----------DOF2        <---------DEAR3(1)   gcatttgcttgactcttcaccacaattatggaggagattgagaaaatgtcaattatgccccactgttcttttgagtatattcttttttcgtcggcacgaa  14575700                      <---------YAB1                    --------->YAB1                    <---------ICU4                    -------->HAHB4                   <---------ATHB12                   --------->ICU4                   <---------YAB1 --------->YAB1  ------>MYB83  <---------YAB1 ---------YAB1   ------>MYB46(1)                                                                ----- -------ICU4    *TSS--------->ATHB12  <---------WOX13(1)                        <----------DOF2<----- ------>YAB1   <---------MYB59 <---------AHL20(2)                         --------->ARR14(2)   ------ ----->ICU4   <---------ANAC55(2)   --------->ATHB12                      <---------ARR14(2)<-------- ->ANAC58     --------->ANAC55(2)<------------CBF    ----------->GT1 ----------->GT1      ----------- ->ANAC58   <-----------GT1   <---------AHL20(2)<---------At4g35610 --------->ALFIN1 <---------YAB1   ttatgacaattttgttacctaatgattagtatttttattgatttatgttcttctgatgtaaaatgagtaagtggtgaaaccgctattacgatttgttatt  14575800              --------->HSFB2a(2)              <---------HSFC1(1)       <---------ICU4       --------->YAB1    --------->YAB1 ---->YAB1    <---------HSFB2a(2)                                             ------->TEIL ----YAB1     --------->HSFC1(1)                                           <---------ZAT6 --->ICU4     <-----------RAV1(2)                  <------ZmHOX2a(2)       <---------ANAC46     <---- -YAB1--------->ICU4                     ----------->GT1             --------->DAG2 <---------ARR14(2) >GT1 <---------ATHB12        <---------------AtSPL8                ---------->DOF2 --------->ARR14(2)   atcaactaataatgttccagaaggtttttggttttgtacaatgttgtaatacgatcattttctgaagaaaaaaagtagtgtatgtgaatatggaagttat  14575900                         --------->YAB1                                                             -                        <---------YAB1                                                     ----------                      <---------CCA1(2)                                                   --------->DAG2                   <-------TEIL                                                          ---------->DOF2            --------->AHL20(2)                                                    --------->At5g28300            <---------AHL20(2)                            --------->ANAC58       ----------->GT1  --- -----YAB1  <---------YAB1     ----------->GT1            --------->ANAC58    --------->MYB52(1) ----   tatctatagaaaatataaatgttcatatcataagagtaaaattcagagttttcatttcacaagcattttccatcgaagacaaacagtaacaaaaagtaaa  14576000                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                              <---------ARR11(3)                                                              --------->ARR11(3)                          --------->ANAC58                    <-----------ARR10                          --------->ANAC58           <---------ZAT14--------->ZAT2  <----------------                         --------->DAG2              <------NtERF2  <---------ZAT2--------->DEAR3(1)                        ---------->DOF2             ------>NtERF2   <---------At4g35610 ----------->GT1  --------->At5g28300              <---------DEAR3(1)             ------->GAMYB ---------->GT1  ----------->GT1                   <---------ATERF1(2)           <------------AtMYB77 ->GT1         <---------At5g28300     ---------->DOF2   ----------->HVH21       --------->MYB46(3) ------>DAG2  --------->YAB1 --------->WOX13(1)    --------->ANAC46 --------->At4g35610             - ------>DOF2 --------->MYB46(3)--------->ICU4      --------->ATERF1(2)        --------->MYB46(3)    -   aaagggtaaaacacaatcaccgtaaaaaaagcaattactggcaaagttgttcgacggcagtgacgatctgagctggctgaacaaccgtccattcttccaa  14576100                                                                                         <------NtERF2        --------->SPL7                                                                  <---------RAP2.6(3)      <---------SPL7                                              ---------->DOF2      --------->RAP2.3(3)     <---------ANAC46                              --------->GLK1(2)                   --------->RAP2.6(2)   --------->LBD16                                 <-----------ARR10  --------->ARR11(3)<-----------HVH21 <---------LBD16         --------->LBD16<-----------HVH21       <---------YAB1         --------->RAP2.3(2) --------->DEAR3(2)      ------>ZmHOX2a(1)    --------->LBD16 <---------ICU4          --------->RAP2.3(1) -----WRI1 <------ZmHOX2a(1)           --------->ANAC46       --------->YAB1         <---------At4g35610 ------>TEIL  --------->ALFIN1<----------ID1<---------LBD16  <---------ATHB12        ------>NtERF2  < -------->MYB52(1)  --------->GLK1(1)  --------->bZIP60(2)   --------->ICU4          --------->At4g35610   tgtaccggcgtaaggagttgggacatcctgagaagacaaacacatcaccggagcatctaagtaatcatgaaagttctcgtttattgcagccgtcaaactg  14576200  Previous    Next  AGI:  At2g34585.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK92885.1) Range:  from: 14575126    to: 14575716    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g34590.1    Description:  transketolase family protein. similar to PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G30120.1); similar to unknown [Populus trichocarpa] (GB:ABK93053.1); contains InterPro domain Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; (InterPro:IPR009014); contains InterPro domain Transketolase C-terminal-like; (InterPro:IPR015941); contains InterPro domain Transketolase, central region (InterPro:IPR005475); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476) Range:  from: 14575890    to: 14578048    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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