Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                     <---------At4g35610                           <-            <-----------HVH21                        --------->At4g35610                           --            <-----------TGA1                        --------->GLK1(2)                       ---------           <---------ANAC58                      --------->ANAC58                           ---------           <---------ANAC55(2)                   --------->ANAC58                        ------>ZmHOX2a(1)           --------->ANAC55(2)    ------->TEIL <---------ANAC58                    <---------At4g35610           <---------ANAC58    --------->ANAC58<---------ANAC46                    --------->At4g35610           <---------ANAC46    --------->ANAC58<---------ANAC58         <-----------GT1 --------->TOE2(3)   gtcaaacgagattgcgtcatttcacaaatgaacaagtacctcgttgatggcgagcatctgtccattactcttcttcaccttcttgagcttcctcaagaaa  14540900  ------>MYB83                                       --------->At4g35610  ------>MYB46(1)                      <---------CCA1(2) ---------MYB59               <------ZmHOX2a(2)     --------->RAP2.6(2) ---------MYB111(1)          --------->ARR11(3)   --------->At4g35610 --------ANAC55(2)           <---------ARR11(3)   <---------At4g35610 ------->ANAC55(2)       ---------->DOF2 <---------YAB1----------->RAV1(1)             <---------YAB1 >ANAC58                --------->AHL20(2)        <---------ZAT2               ---------->DOF2  ----- >ANAC58                <---------AHL20(2)        --------->ZAT2   ---------->DOF2  --------->GLK1(2)   tacctaatccaaataacacactctaattaaagatcaagctcatatcattctcagcagcaacaaaaatggaaaagagagagagaaagaatatgattactaa  14541000                                                               <---------ALFIN1       --------->ARR11(3)                           --------->MYB52(2)       <---------ARR11(3)          <------NtERF2                       --------->TOE2(1)            --------->ARR11(3)        --------->ETT(1)                --------->ANAC58                   <---------CCA1(2)        <-----------HVH21     ---                <---------MYB52(2)             ------>ZmHOX2a(1)      ------>ZmHOX2a(1)      -------- --------->ARR14(2)    --------->TOE1(1)       ----------->GT1<---------At4g35610     <---------ARR11(3) <---------ARR14(2)------->TEIL          <-------TEIL         <---------ZAT14 <---------ANAC46 <----- --->P          --------->ANAC58     <---------ARR11(3)       <------NtERF2<-----------RAV1(1) ------   ccagaacttggacttggcacgaacctcgttcgtagcccagagcttcatcctgtaaatcttaggctgcacatccttctctgtcgggagagctcttcccaca  14541100                                              <---------GLK1(2)       ----------->GT1                        <---------ARR14(2) --------->TOE1(1)                            --------->ARR14(2)                         <---------YAB1 -------->RAV1(2)                           ----------->ARR10                          <---------ZAT6 ->ANAC46                                 <------ZmHOX2a(2)                   ----------->RAV1(1) ----ALFIN1                            ----------->ARR10                    --------->At4g35610 --->MYB46(3)                   ---------->DOF2--------->GLK1(2)            <---------At4g35610<XXXXX   acctggtactggtgaaactgcaaatgaaaccagacaaagcttagatcagattctttcttcgagtccgaaacttgaatcagcagcaaatagtgtcattgaa  14541200                                --------->ANAC58                --------->At4g35610                                               ---------->DOF2               <---------ARR11(3)                                           ------->GAMYB               --------->ARR11(3)                                     --------->TOE2(3)           ---------->DOF2  --------->ANAC58 <---------HSFB2a(2)      --------->TOE1(3)    --------->ANAC58        --------->ANAC58 --------->HSFB2a(2)   <---------GLK1(1)    --------->ANAC58  <---------LBD16    <---------ANAC58      --------->ALFIN1 --------->YAB1    --------->ANAC46-------->P  --------->ANAC58             <---------ANAC46 ------>MYB46(1) XXXXXXXXXXXXXXXMIR863-5P ---------->DOF2<---------ANAC58   <---------DEAR3(1)------>MYB83         <<   atcaacaaggaatcaaagagcttaccctgaaagcacccatttttcgtctggagagagacaatgcggtggaaacctcaaccaaatataagcggctagggtt  14541300                                                            ------------>CBF                  --------->At4g35610                      >>>>>>>>>>>>>>>>>LFY                  *TSS                                     <<<<<<<<<<<<<<<<<LFY                  <---------At4g35610                  ---------->DOF2      --------->YAB1                 --------->ARR14(2)                  <---------YAB1       <------------CBF         --                 --------->GLK1(2)                 --------->YAB1      <---------MYB52(1)         ---                 <-----------ARR10                <---------YAB1      --------->At5g28300         ---        <---------YAB1         --------->TOE1(3)--------->GLK1(1)     <-------GAMYB               ---    <----------DOF2            --------->TOE2(3)<---------bZIP60(1)  ----------->GT1          <------ <<<<<<<TBF1     <---------ARR14(2)             --------->bZIP60(1)  <---------MYB46(3)      <-------   cttcttctttataaatgagcatctgcccaaaaaccctaattctaaaactgatatcataaaagcccaatgggctgttaattgtaatcaagtcttagcccac  14541400      ----------->GT1      <------MYB46(1)      <------MYB83                                                                  --------->ANAC58     --------->MYB59          <---------YAB1                                        --------->ANAC58   >>>>>>>>>CBP60g         <---------AHL20(2)                                   -------->P   >>>>>>>>>SARD1          <---------AHL20(1)                                 ------>ZmHOX2a(1) ------->LBD16             --------->AHL20(1)                                --------->TOE2(3) ------>ANAC58        ------>ZmHOX2a(1)                                   <-----------GT1      ------ ------>ANAC46     ------>ZmHOX2a(1)                                     <---------CCA1(2)     <----- ------>ANAC58    <---------ALFIN1                                      <---------AHL20(2)     ------ ---ALFIN1      ------>ZmHOX2a(1) <-----------GT1                     <---------YAB1--------->ANAC46 --ZAT18    <-----------GT1--------->AHL20(2)                        --------->AHL20(2)        <-----   ccgaaatttggttatttcctcctcctcattttattatttctctctagtcaaatttttgtagcaagtttcaatattatatccttaccaggccaaatagtgc  14541500                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->ATHB12                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <---------ICU4         --------->LBD16                                            <---------ATHB12         ----------->GT1                 --------->AHL20(2)         --------->ICU4       <---------LBD16                   <---------AHL20(2)   ----------->GT1       --------->MYB52(1)                <---------AHL20(1) ----------->GT1                ---------- --->ZAT18      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        ---------->DOF2                ----------->GT1 ----ZAT18      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ----------->HVH21      --------->AHL20(2) --->ZAT14     ------------------------>ANAC81        ----------->GT1--------->YAB1  <---------YAB1 - ----ZAT14----------->GT1         <-----------GT1     <---------ANAC46--------->TOE2(3)---------->DOF2   acacacacatacgggaaaaaaaaaaaaaaaaaaaaaaaaccattttatttgaagaggggtgaaagtgaaaatcattaaccaaaaaatatgaaagtgaaaa  14541600                                                  <----------ID1                                                  --------->ANAC58                                              <-------GAMYB                                           --------->ALFIN1             --------------->AGL15       ========================bZIP_DOF       <----------DOF2                   =============MYC_MYB       <---------DAG2                    <---------TGA1a    ------>MYB83  =================================bZIP_DOF    ------>MYB46(1)             <---------At4g35610  <---------MYB111(1)           --------->At4g35610   ---------->DOF2  <---------MYB111(2)       ----------->RAV1(1)   --------->ANAC58  <---------MYB59 ---------->DOF2      --------->At4g35610  <---------MYB46(2)       <----------ID1--------->ALFIN1                                    -------- ->GT1 ============================================bZIP_DOF                            --------->ANAC46 ------->P   <---------------AGL15     <---------At4g35610                        --------->ANAC46   actaccaaactttatctgtttaaagcaaaacgacagaagacagatgtgggttacgacaaagcccaaacacacatatataggtccaatccactctatagta  14541700                                         --------->AtLEC2                                         --------->ANAC58                                         --------->ANAC58                                         --------->ANAC55(1)                                         --------->ANAC46                ----------->GT1       <---------ARR14(2)           --------->MYB52(1)         --------->ARR14(2)          --------->TOE1(2)          <------ZmHOX2a(1)        --------->CCA1(2)        --------->ICU4            ---------->DOF2                   --------        ====================================HOX2a_HOX2a  --------->ANAC58                    <-------        <------ZmHOX2a(2)   <------MYB46(1)              --------->ANAC58                    <-------       <---------ARR11(3)   <------MYB83 <---------ANAC55(2) ----------->GT1        <---------ATHB12       --------->ARR11(3)   ----------------------->TaNAC69(2)                 ----------->GT1<------      --------->GLK1(1)    --------->MYB55(2)        --------->ANAC58         --------->DAG2<-------GAMYB ->YAB1--------->AGP1      <---------MYB46(3)        --------->ANAC58       ---------->DOF2<---------MYB46(3)   gcattgtgagatccaacgaagtaaattagtgggtgatgaggacacgcaaacacgagcgcaagaaagaaaaaaaaaaaaaaaaggtaatcaaggtcgttat  14541800  Previous    Next  AGI:  At2g34480.1    Description:  60S ribosomal protein L18A (RPL18aB). Identical to 60S ribosomal protein L18a-2 (RPL18AB) [Arabidopsis Thaliana] (GB:P51418;GB:O64699); similar to 60S ribosomal protein L18A (RPL18aC) [Arabidopsis thaliana] (TAIR:AT3G14600.1); similar to unknown [Populus trichocarpa] (GB:ABK93710.1); contains InterPro domain Ribosomal protein L18ae; (InterPro:IPR002670) Range:  from: 14539787    to: 14541318    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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