Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <----------DOF2                               <---------ANAC58                               <---------ANAC58                    <---------ANAC58                                                   <---------ZAT14       --------->GLK1(1)  <----------DOF2                                   <-----------HVH21    ---- --------->MYB52(1) <---------ANAC58                                     ------->TEIL  --------->ZAT14 <-----------GT1    <---------ANAC46  ---------->DOF2        --------->ETT(2)   --------->ANAC55(2)   gtttaacgggtttcttcttggggcttgtctttggctttctcaaaggctgaagtctcagtcttgtagacctccttgcaccttcacttgacttcacagccaa  14536200                                                     ------>ZmHOX2a(1)                                              --------->MYB52(1)                                            <---------MYB52(2)                                            <---------MYB46(2)                   <-----------GT1          <---------MYB111(1)               --------->ARR11(3)           <------------MYB.PH3(2)               <---------ARR11(3)     <-----------ARR10        ------>ZmHOX2a(1)             --------->ARR11(3)   <---------ANAC58    --------->ARR11(3)                <---------ARR11(3)   <---------ANAC58                       --- ----->ZAT6  ----------->ARR10        --------->GLK1(2)<----------DOF2                           ----   ctctaagttcctgccaagattttacaacacaattaacaaaaatctaactaacatcctctttccttgctcttcttctcacccatttgccattggatagcat  14536300                                                                               --------->TOE1(3)               --------->ARR14(2)                                              --------->TOE2(3)               <---------ARR14(2)         <---------ICU4                --------->TOE2(3)         <----------DOF2         --------->MYB46(3)                     --------->TOE1(3)        ----  --------->ZAT18          <-----------ARR10     <-----------GT1    <---------ARR14(2)           ---- ------>DAG2  <---------CCA1(2)<-----------GT1--------->YAB1        --------->ARR14(2)         ------ ------>DOF2--------->YAB1<---------CCA1(2)----------->GT1      --------->At4g35610        --------->GLK1(1)   aaagttcacaactttcatatccaattccctatctaaccacttaatcagtaataaccagagagactaagcagaacccttaaaccctaaacagagaaatcaa  14536400                                           --------->ANAC58                                           --------->ANAC58                        --------->MYB52(1)                                           --------->ANAC46                       ----------->HVH21                                         ---------->DOF2                          --------->ANAC58                                        --------->YAB1                      --------->LBD16 =========                              <---------ANAC55(2)               ------>MYB46(1)   --------->ANAC58                --------->ANAC58      ------>MYB83              ------>MYB83--------->At4g35610         ----------->GT1      <---------HSFB2a(2)            --------->DEAR3(2)   --------->ANAC46     <-----------RAV1(2)      --------->ANAC55(2)           --------->MYB52(1) <---------ZAT14 ----->ANAC58   --------->ANAC58      ------>MYB46(1)       -------->P      <---------At4g35610 ----->ANAC58   <----------ID1--------->HSFB2a(2)          --------->MYB52(1)  --------->ZAT14      - ---->DOF2    ---------->DOF2--------------->AtSPL8 --------->ANAC46    --------->DEAR3(1)  ---------   agcaaaaccaggtgtaaaaagccaaacttgttctgtaacctatcaaagccagacacaaaacttaccgactagagcctccgctgcacgacggagacaaagg  14536500                                                                                        <---------ZAT14                                                                                        <---------SPL7                                                                                        --------->ZAT18                                                                                       <---------ANAC55(2)          --------->At4g35610                                     ----------------------->TaNAC69(2)          <---------At4g35610                                ------>NtERF2             --------->ANAC55(2)          <---------GLK1(1)                               <---------At4g35610          <---------ANAC58          --------->GLK1(1)                             --------->SPL7                 <---------ANAC46          --------->ZAT2                               <---------MYB52(1)              <---------ANAC58   <---------ANAC58                               <----------DOF2 <----------DOF2     <--------------   ==========================================bZIP_DOF<---------ANAC58              <------------CBF   <---------TGA1a                               <---------HSFB2a(1)             <---------MYB52(1)   <---------ANAC58                              <---------HSFC1(2)             --------->LBD16   <---------ANAC46                   <---------LBD16<---------ANAC58          --------->ANAC46   <---------O2                       --------->HSFB2a(2) --------->At4g35610  <---------ANAC55(2) ============bZIP_DOF             <----------DOF2--------->HSFB2a(1)           --------->ANAC55(2) ---------->HVH21  <-----------TGA1   <---------HSFB2a(2)--------->MYB52(2)   <---------LBD16       < ->DOF2   <---------ZAT2          <---------DAG2 --------->HSFC1(2)    *TSS <-----------GT1         <   ccctgacttgggagctctcttcgtcattttctctcactttctcggaatcgaactttcgttcgctgcctctttggggtttttccgtaattgcgtactgaaa  14536600                         <---------ANAC55(2)                         <---------ANAC58                         <---------bZIP60(1)                         <---------ANAC58                         <---------ANAC46                         --------->ANAC55(2)                         --------->bZIP60(1)                        <------NtERF2                      --------->ALFIN1                     <-------MYC2                     <-------MYC3                     ------->MYC2                     <-------PIF5                     <-------MYC4                     ------->MYC3                    --------->bZIP60(2)                    --------->PIF3(3)                    --------->TGA1a                    <---------O2                    --------->O2                    ==================================bZIP_DOF                    ==================================bZIP_DOF                    <---------TGA1a                    <<<<<<<<<<HY5                    <---------PIF3(3)                                                  --------->MYB52(2)             =================bZIP_DOF                                                 <---------MYB46(3)             <----------DOF2                                                      <---------TOE2(3)          <---------ARR11(3)                                                      <---------TOE1(3)          --------->ARR11(3)                          <------ZmHOX2a(2)           <-----------------AGL1       <------NtERF2>>>>>>>>>>HY5                    <---------ARR11(3)          <---------DOF5.7(2)     <---------ANAC46------->PIF5                    --------->ARR11(3)    ---------->DOF2          <     --------->ETT(1)------->MYC4                ---------->DOF2       <-----------GT1 *TSS   <------NtERF2 -AtSPL3 --------->GLK1(1)         <---------ATHB12--------->ICU4    --------->AHL20(2)<-----------RAV1(1) ---------GLK1(2)   <---------bZIP60(2)      --------->DAG2     ------------>CBF --------->MYB52(1) - ------------CBF<----------------PIF3(2)   ---------->DOF2     <-----------GT1 --------->DOF5.7(2)---   cagattgtcggagacctttgccacgtggcgtaatctaatcaacaaaaaaggcaaagatcaaaaatttacaatttaacaaaagttaacgtttgtggcagag  14536700                         <---------ANAC58  --------->At4g35610                         <---------ANAC58  <---------At4g35610                                    <--                     <----------DOF2       <---------ZAT2                                        <---                 --------->REM1(1)         --------->ZAT2                              <----------DOF2 ---------ARR14(2)<---------ARR11(3)     <-----------RAV1(2)                        --------->ARR11(3) -------->ARR14(2)--------->ARR11(3)    ------>ZmHOX2a(1)                           <---------ARR11(3) -------->GT1  ----------->RAV1(1)     --------->TOE2(3)                            <-----------ARR10   aggttacacatcgatggcaacatctttgcttctcagacattcctcagctgtcttcttctctcagtcttccttcttcaccaagaacaaatcttttcgctcc  14536800                                                --------->GLK1(2)                                                --------->ARR11(3)             --------->LBD16                                               <---------GLK1(2)          <---------GLK1(1)                                            <---------HSFC1(1)            --------->GLK1(1)         <                                            --------->HSFC1(1)  <---------ANAC46                    <         ---------->DOF2   --------->YAB1   <---------HSFB2a(2) <---------ANAC58                    < -------MYB52(1) <---------ARR11(3)         --------->HSFB2a(2) <---------ANAC58                <---- -------DOF2     --------->ARR11(3)   <---------ATHB12    <---------AHL20(2)  <-----------------AGL1-   tttacttccatcaaagtaagatttatctgtaataaaaccattgattctagaatcttgtattgaattgtgtgtttagatttccccaattctgaaattgact  14536900               --------->At4g35610               <---------At4g35610             <----------ID1         ------->TEIL          <---------At4g35610 ---------->DOF2        <---------CCA1(2)   ---------->DOF2  <---------ZAT14           <------ZmHOX2a(1)    <---------ANAC46       --------->ALFIN1  --------->ZAT14         <---------TOE1(2)           <--- ---------ANAC46        --------->DAG2    <---------ANAC46      <-----------HVH21       --------->LBD16 ---------ANAC58       --------->DAG2   --------->ZAT14        <-----------RAV1(1)    <---------LBD16 ---------ANAC58      ---------->DOF2   <---------ZAT14    --------->ALFIN1 --------->At4g35610 <---- ------DOF2  <-----------RAV1(2)        <---------------------WRI1  <-----------RAV1(2)<---------LBD16 -------------------->WRI1 <---------REM1(1) --------->REM1(2) =================RAV  --------->MYB52(1)   ttgcttgtttgtatctcagatggaaaaaggtgaagcagagaatgcagtgaagacaaagaaggtgtttgtcgcaggagcaactggacaaaccgggaagagg  14537000                                <---------WRKY12                               <------NtERF2                              <-----------HVH21                             <---------ATERF1(2)                       <---------ANAC58                       <---------ANAC58                   --------->LBD16                  ==================================================bZIP_DOF                  ==========================bZIP_DOF                  <---------TGA1a                  =================bZIP_DOF                  <---------ANAC46                         --------->ANAC58                  <---------ANAC58  <---------ZAT2         --------->ANAC58                  <---------ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <---------bZIP60(2)                      ----------->GT1                  --------->O2<---------RAP2.6(3)        ---------->DOF2          <---------MYB46(3) --------->ATERF1(2)  <---------REM1(1)                  --------->O2     <---------At4g35610<----------DOF2      <---------ANAC58              ---------->DOF2 ------ARR14(2)   <---------O2------>NtERF2  <---------ANAC58       --------->ARR11(3) <---------CCA1(2) --ZmHOX2a(1)     --------->TGA1a---------->DOF2  <---------ANAC46  <---------ARR11(3)<-----------HVH21   attgtggagcagttgttgtcccgtggctttgccgtcaaagctggtgttcgtgatgtagagaaagcaaaaacatctttcaaagacgacccgtctcttcaga  14537100  Previous    Next  AGI:  At2g34450.1    Description:  high mobility group (HMG1/2) family protein. similar to HMGB3 (HIGH MOBILITY GROUP B 3) [Arabidopsis thaliana] (TAIR:AT1G20696.3); similar to HMGB3 (HIGH MOBILITY GROUP B 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20696.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66932.1); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 14534815    to: 14536571    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g34460.1    Description:  flavin reductase-related. Identical to Uncharacterized protein At2g34460, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8H124;GB:O64701;GB:Q7EXF0;GB:Q93W50); similar to binding / catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT3G18890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66936.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 14536687    to: 14538037    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version