Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->DEAR3(2)                                                                                           <xxxxxxxxx                                                                                        <---------ZAT14                                                                                        --------->ZAT14                                                                                    ------>ZmHOX2a(2)                                                                                  <---------ARR11(3)                                                                                  --------->ARR14(3)                                                                                  --------->GLK1(2)                                                                                  <---------ARR14(3)                                                                                  --------->ARR11(3)                                                                                  --------->ARR14(2)                                             <xxxxxxxxxxxxxxxxsmallRNA(s)         <---------ARR14(2)                                          <---------ZAT2                         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   --------->WRKY45                             ----------->ARR10                                   --------->WRKY38(1)                     --------->At4g35610                                   --------->WRKY12                        <---------At4g35610                                  --------->ALFIN1                        <---------DEAR3(1)---------                                 <xxxxxxxxxxxxxxxxxsmallRNA(le3)        <-----------HVH21 ------->TEIL                                <---------ANAC46                       --------->ANAC46----------->HVH21                                <---------ANAC58                     =====================HOX2a_HOX2a                                <---------ANAC58 <--------P          ======================HOX2a_HOX2a                            <xxxxxxxxxxxxxxxxsmallRNA(s)             ------>ZmHOX2a(1)<xxxxxxxxxxxxxx                           <----------CDC5--------->ZAT2          <---------ATHB12<---------AGP1                      <---------GLK1(2)  ------>MYB83            <---------ARR14(2)<------ZmHOX2a(2)                    ----------->ARR10    ------>MYB46(1)         --------->ARR14(2)--------->CCA1(2)   aacttgagtagcccaaatggctaagatgctctgagcgtggaccaagctcgggttgcccaagtagtccaatcctccgtcgctgaagatctgtgaaccggcc  14530200                                                              <---------STY1(1)       --------->At4g35610     ------>MYB83                                             --------->STY1(1)      <-----------RAV1(1)     --------->MYB52(1)                                    ------>NtERF2           ----------->RAV1(2)     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->DEAR3(1)     <xxxxxxxxxxxxxxxxxxx     ------>MYB46(1)                                   --------->ANAC58   <---------AtLEC2   --------->AtMYB61                                   --------->ANAC58  <---------ZAT2   <xxxxxxxxxx   <---------MYB59                ------>ZmHOX2a(1)    --------->ANAC46  --------->ZAT2 <---------ANAC46 xxxxxxxsmallRNA(s)      --------->ANAC46     <---------LBD16<xxxxxxxxxxxxxxxxxxsmallRNA(si3) >DEAR3(1) <----------DOF2    <---------MYB52(1)--------->LBD16        --------->LBD16<---------At4g35610 xxsmallRNA(s)        --------->ZAT14         <-----------RAV1(2)    <------NtERF2 <---------At4g35610   ttgaaccaaaccgcttctccgaacttcactccgttcctagccaatagctcagggaaaacgcagcctagggctccgagcatggcccatctgctgtggataa  14530300                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                       <---------ARR14(2)                                       --------->ARR14(2)                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <------NtERF2                                     <---------MYB46(3)                                    <---------ANAC46                                   <------NtERF2                                   <---------------------WRI1                                   --------->ATERF1(1)                                              <                                   <---------At4g35610                                              <                                   <---------LBD16                                                <--                                  <---------RAP2.3(1)                                             ---                                  <---------DEAR3(2)                                             <---                                  <---------ORA47(2)                                       <---------ZAT2               ------>ZmHOX2a(1)  <---------ATERF1(1)                                      --------->ZAT2              <---------ANAC58   <---------DEAR4(1)                            --------->MYB52(1)<---              <---------ANAC58   <---------DEAR3(1)                    --------->LBD16     --------->At4g35610           <---------ARR14(2)    <---------DREB2C(2)                  --------->LBD16      <---------At4g35610           --------->ARR14(2)   --------->ATERF1(1)                   <---------LBD16    <--------P--      --------->MYB52(1)        <---------ORA47(1)           --------->LBD16 ----------->HVH21  -----     ----------->HVH21         <-----------HVH21    <-----------HVH21<---------LBD16  --------->MYB59   --------->At4g35610 <---------ARR11(3)          --------->ALFIN1 <---------LBD16 <--------P<------   <---------At4g35610 --------->ARR11(3)      --------->At4g35610 <---------At5g28300<---------TOE2(3) xxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)<---------DEAR3(1)<---------WRKY38(1) --------->DAG2- xxxxxxxxxxxsmallRNA(se3)  <---------LBD16    --------->MYB52(1)<-----------HVH21  <---------MYB52(1)   cttctagctcacggttcctggcgaaggtctctgggtcggcggatagaccagcggtgtcccatccgtagtcaccggggaactcaccggtaaggtagctcgg  14530400                                                   --------->At4g35610                                                <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <---------SPL7                                         <---------ANAC58       <------NtERF2                     --------->ANAC55(2)      --------->LBD16                    <---------ANAC58     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------ANAC55(2)     --------->DEAR3(1)                 ------>ZmHOX2a(2)    <---------LBD16                     <-------TEIL  <---------DEAR3(1)                   <------ZmHOX2a(2) ---------ANAC58                      <---------GLK1(2)                        <------NtERF2 ---------ANAC58                      --------->ARR14(2)                      ------>NtERF2 -------ATERF1(1)                     <---------ARR14(2)                <---------ANAC46 --->NtERF2                           --------->AGP1  ------>NtERF2<----------DOF2 ------DEAR3(1)                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ANAC58            - ------RAP2.3(3)                     --------->At4g35610       ------->TEIL  --------->ETT(2)       - ------->ATERF1(1)                   <---------At4g35610 ----------->HVH21   <---------ETT(2)       - ---->LBD16                         ----------->ARR10<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <------ ---LBD16      ------->TEIL      <-----------HVH21 <---------At4g35610  <---------ANAC58 ------>ZmHOX2a(1) -------->ATERF1(1)       ----------->HVH21 --------->SPL7  <---------WOX13(1)----------->RAV1(1) <--   gggctcgccggagaatggacccaagtacttgactcggtcagatccgtaccatgggctgcctgatggaccctttggcttggcgacagtcttcctcatggtc  14530500          <---------ANAC46     <---------At4g35610                                 --------->At4g35610                   <-----     <------NtERF2   --------->At4g35610       ------>NtERF2                               <---------YAB1     --------->At4g35610    <-----------RAV1(2)--------->LBD16                           --------->YAB1     <---------ATERF1(1) <---------RAP2.6(2)  <---------LBD16       --------->ANAC58    --------->ICU4    --------->RAP2.6(2) <---------LBD16      <---------LBD16        --------->ANAC58    <---------YAB1 --------->DEAR3(1) ----------->HVH21      --------->ARR14(2)  <------ZmHOX2a(1)   --------->ANAC58 -------->ANAC58  <---------At4g35610      <---------ARR14(2) <----------ID1       --------->ANAC58 -------->ANAC58  ----------->RAV1(2)     <----------DOF2<---------At4g35610   <---------TOE2(3) -------->ANAC46  --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i) ---------->DOF2<------ZmHOX2a(1) -----HVH21--------->LBD16 <------NtERF2 <---------DAG2  <------NtERF2    <---------MYB46(3)--------- -------ALFIN1<------ZmHOX2a(1)  <-----------HVH21     <-----------RAV1(2)--------->ATHB12--------->AHL20(2)   acacggccgcttccgaggacatctgatgcggcaggcttcacagcctttccggcgaaggcaggggaggacaaagccatggttgaggaagccattataatct  14530600                          <---------YAB1                   <---------ARR14(2)                          ----------->HVH21                --------->ARR14(2)                        <---------MYB46(3)            <------MYB46(1)           --------->YAB1                      <---------ANAC58                <------MYB83   <---------DAG2                      <---------ANAC58            --------->ATHB12 --------------->AGL15                      <-------GAMYB               <---------MYB46(3) <----------DOF2           ------                     <---------MYB46(3)   <---------WOX13(1)       <---------------AGL15  --------->MYB59 ----ICU4    <----------DOF2 <---------ANAC46  *TSS <--------P    <---------ALFIN1        <---------TOE2(3) >YAB1 <------------------------ANAC81  --------->ATHB12<---------ANAC46   ------------>CBF    <-----   ttgtttttgtgttttcttttttttggttgtgactggtgagagtgattgaaaatggttggggtatacgtccactttatagcaatgttaagagtaaggtttg  14530700                                 <---------ANAC58                <---------ARR14(2)                --------->ARR14(2)        --------->GLK1(2)          --------->GLK1(2)--------->ATHB12               --------->ARR11(3)          --------->ARR14(2)     <---------ANAC46         <---------ARR11(3)          <---------ARR14(2) <---------WOX13(1)         <---------MYB52(1)     --------->ZAT14  <---------ZAT14    --------->ARR11(3)             <-----------HVH21     <---------ZAT14  --------->ZAT14    <---------ARR11(3)         <---------TOE1(2) --->MYB52(2)   ------->TEIL<------------CBF            --------->DOF5.7(2) ----MYB46(3)  <---------CCA1(2) <---------ANAC58    ---------->ID1------>ZmHOX2a(1)         <-------   ttatctgtgaagtatctgtatctgtttagtgattggcttatgagattttgggattgtcgttatcttgtcctatgtgtcactctctagtccataagctttt  14530800                                                                                          --------->ANAC58                                                                                          -----------                                                                                          --------->ANAC58                                                                                        ---------->DOF2                                                                                  -------->ATHB1                                                                                  <---------ICU4                  ------->GAMYB                                                   --------->ATHB51                 --------->ANAC58                                                 --------->ATHB12                 --------->ANAC58                                             ------------>ATHB5          <---------At4g35610                                              <---------ANAC58      <----------DOF2                    ---------->DOF2                   <---------ANAC58   --------->GLK1(2)                 --------->ZAT18 <---------------------WRI1  <---------ATHB51  <---------GLK1(2)         <-----------HVH21    <----------DOF2         <XXXXXXXXXXXXXXXXXXXXMIR862-5P ---DOF2  --------->At4g35610        <---------ZAT18<---------LBD16--------->YAB1--------->ICU4   gctagattctttagctgcaacgaaaacacttgtcatttgtacacaaagaaactttggggaaattttcaaagataaatgcttgaattattggaaagaaata  14530900                                                                               <----------DOF2                                                                            <-----------GT1                                                                         <---------ARR11(3)                                                                         --------->ARR11(3)                                                                         <---------ICU4                               <---------ANAC58        --------->bZIP60(2)  <---------AHL20(2)                         <----------DOF2  --------->AHL20(2)             --------->AHL20(1)             <---------ATHB12  <---------ANAC58   --------->ANAC46    --------->YAB1    <---------ATHB51   ---------->ID1     <---------AHL20(2)          --------->AHL20(2)    --------->ICU4    <-----------GT1   <----------DOF2--------->ANAC46  <---------AHL20(1) >GT1<---------ICU4<---------AHL20(2)   --------->TOE2(3)            <---------ATHB12<-----------GT1   tttgaaattattccaatctatttttttctttttccttgttttctttaattccaatccacttcatgctctcaataatattttcttttttttcttatcaagt  14531000                                                          <---------AHL20(1)                                                          --------->AHL20(1)              --------->At4g35610                  ---------->DOF2                  ------>MYB46(1)                        <---------At4g35610       --------->ANAC58                            ------>MYB83                        <<<<<<<<<MYB2       --------->ANAC46                          <---------MYB46(2)     ----------->GT1<<<<<<<<<MYB1       --------->ANAC58                          <---------MYB59        <---------ANAC55(2)         -      --------->SPL7                           -------->P--------->AHL20(2)            <---------MYB52(1)   ttgtttcgaacgccaaactacaaagtttttaagtgaaactagaaacacttaccaaacaaatatatatcaatgttatgtaaaacaatgcagttagatgaaa  14531100  Previous    Next  AGI:  At2g34420.1    Description:  LHB1B2 (Photosystem II light harvesting complex gene 1.5); chlorophyll binding. Identical to Chlorophyll a-b binding protein 2, chloroplast precursor (CAB2B) [Arabidopsis Thaliana] (GB:P04778;GB:P83754); similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G29930.1); similar to chloroplast chlorophyll a/b binding protein [Brassica napus] (GB:ABG29728.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 14529603    to: 14530647    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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