Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <------ZmHOX2a(1) --------->ANAC58                             --------->ALFIN1          <-------GAMYB          <----- --------->ANAC58                           --------->ALFIN1           <---------ANAC58     <------NtERF2 ---------TOE2(2)                           --------->CCA1(2)          <---------ANAC58   <---------ANAC46 ------>TOE1(2)                <---------At4g35610                     <---------ANAC46   <---------DEAR3(1) ----->ANAC58                  --------->At4g35610                     <---------DEAR3(1) <---------ANAC58 ----->ANAC58          <---------TOE2(3)   --------->ARR11(3)       <---------RAP2.3(3)   <---------ANAC58   cgcaggaaactatgtaatctcttctaatgttttagctgatatgaagatgtgggatgagtctgcgaagatgagggcgttgatgagagacagaggcgtcgtt  14525100                                                                                      --------->GLK1(2)                                                                                     --------->ARR14(2)                                                                                     <---------ARR14(2)                                                                                     <---------GLK1(2)                                                                                    <---------HSFC1(2)                                                                                    <---------HSFB2a(1)                                                                                    --------->HSFC1(2)                                                               --------->AHL20(2)   --------->HSFB2a(1)                                                     --------->ATERF1(2)           ----------->ARR10                                                     --------->HSFB2a(2)       <------NtERF2  -------                                                     <---------HSFB2a(2)       --------->ANAC58   ---             --------->ZAT2                          <---------ATERF1(2)       --------->ANAC58<-----             <---------ZAT2                          --------->ETT(1)        <-----------RAV1(2)<----             --------->At4g35610                    <---------LBD16       --------->ALFIN1    -------            ------->TEIL              --------->MYB52(1)      --------->ICU4 <---------ANAC46<-------TEIL           <-----------RAV1(2)     --------->At4g35610 <------NtERF2    --------->ALFIN1  --------->LBD16       =========================HOX2a_HOX2a     <---------ANAC58        =================RAV<--------       <------ZmHOX2a(1)           <---------At4g35610--------->LBD16   <-----------RAV1(1)<---------MYB52(1)    <-----------RAV1(2)  <------ZmHOX2a(2)    --------->ARR11(3)    <---------At5g28300 <---------LBD16 ----MYB52(1)<---------At4g35610 --------->ZAT18<---------ANAC58   <-----------GT1 <---------KAN4(2)   aagacaccaggatgcagctggattgagatcgagggtgagctaatggaatttcttgccggaagcgattatttacagtgtggcagggaagattccggttcgt  14525200          <---------MYB46(3)      <---------MYB46(3)      <-----------RAV1(1)                   <------MYB46(1) <---------AHL20(2)                         <------MYB83           <---------HSFB2a(2) -->MYB52(2)       --------->At4g35610      ----------->GT1        --------->HSFB2a(2) ------>MYB52(2) <------ZmHOX2a(1)         --------->MYB59         <---------LBD16 --GAMYB  <------MYB46(1)               ------->TEIL           <----------DOF2 -----MYB52(1) <---------ANAC46    --------->CCA1(2)       ----------->HVH21 ---->GT1<---------AtMYB61      --------->DAG2         <---------At4g35610                      ----- -MYB52(1)<------MYB83        ---------->DOF2          ----------->RAV1(2)          ----------->GT1   tatttgatttgttggtggaggagatgaagagggaaaggtatgaatttggttacattcacctgtgactttctcggagagtgcaagtctagtaaaatttgtt  14525300                                                                                <---------ANAC46                                                                                <---------ANAC58                                                                                <---------ANAC58                                                                                <---------O2                                                                                --------->O2    --------->AHL20(2)                                                          --------->ANAC55(2)    <---------AHL20(1)                                <---------YAB1            <---------ANAC55(1)    <---------AHL20(2)                               <---------AHL20(2)    <---------ICU4    --------->AHL20(1)                               --------->AHL20(2) --------->YAB1           ----   --------->AHL20(2)              ------->TEIL     --------->YAB1------->TEIL  <---------ANAC55(2) -   <---------AHL20(2)        ------->TEIL           --------->AHL20(2) <---------YAB1           <---- ------>GT1           <---------YAB1      --------->ZAT6     <----------DOF2  <-----------GT1   -----   gtaaaataaatttgaagttttattttgaatgtatatgaaacttaacactaacaattaaaattactttgaatctataatagttacgtctctctctagttat  14525400                                    --------->YAB1      --------->WOX13(1)          <------------CBF     <---------ICU4          <---------MYB52(1)                                      *TSS    --------    <---------ATHB12        <-------GAMYB                                           --------->ANAC58    <---------YAB1         <-----------RAV1(1)                                      --------->DEAR3(2)  <-----------GT1       <-----------GT1                                            --------->SPL7 --------->AHL20(2)  <---------AHL20(2)                                           ------>MYB83 <---------AHL20(2) --------->AHL20(2)            --------->TOE2(3)               --------->MYB52(1) ----->AHL20(2)     <---------AHL20(2)    <-----------GT1                         ------>MYB46(1) -------->AHL20(2)  <---------AHL20(1)   --------->MYB46(3)                  --------->MYB52(1) -----YAB1     ------------>CBF<------MYB46(1)  --------->GLK1(2)    ----------->GT1--------->ANAC58- ---->ICU4     <---------ATHB12<------MYB83    <---------GLK1(2)  ---------->DOF2<---------SPL7     <   tatttaatcattcagtaatcaatttttttctgttggtattgtaatcaccgattcttaaaattagtagagaaaggcaaaaaaaccgaacggaccagaaaag  14525500                                                            --------->LBD16                                                            ------>NtERF2                                                           ------->GAMYB                                                           --------->ANAC46                                                           --------->ANAC58                                                           --------->RAP2.6(2)                     ------->GAMYB                         --------->ANAC58                 ===========================================MYC_MYB                <---------ATHB12                          --------->DEAR3(1)                --------->MYB46(3)                        <---------MYB55(2)                <---------MYB52(2)                       <---------ATERF1(1)                <---------MYB55(2)                      --------->PCF2               --------->ANAC58                        <---------ALFIN1               --------->ANAC58                    <-----------HVH21               =============================================MYC_MYB               -------->P <---------MYB52(1)      <---------O2               ------>MYB46(1)                    --------->O2               ------>MYB83                       =================MYC_MYB             --------->AtMYB61<---------ANAC58    <---------bZIP60(1)  --------->KAN4(2)  =======================================MYC_MYB <---------KAN4(1)  --------->MYB46(3)            --------->bZIP60(2)                <---------ALFIN1 --------->KAN4(1)  <---------MYB111(2)           <---------bZIP60(2)                --------->REM1(1) <---------HSFB2a(1)<---------MYB55(2)            =======================================bZIP_DOF --------->HSFB2a(1)<---------MYB52(2)            <---------DEAR3(1)            --------->ANAC58 --------->HSFC1(2)------>MYB46(1)                <---------TGA1a               --------->ANAC46 <---------HSFC1(2)------>MYB83        <---------WRKY18(1)--------->MYB46(3)    --------->ANAC58 -->DOF2    --------->MYB46(3)<---------ANAC58    --------->TGA1a             ---------->DOF2 ---------->ARR10------->GAMYB<---------ANAC46    --------->bZIP60(1)      --------->TOE2(3) ---------KAN4(2)--------->AtMYB61 --------->At4g35610<---------SPL7<-----------GT1----------->RAV1(1)   agaacattcgccaaaccaaccaacaaccgtttgggtgagcttgacgagaacgacgtcgcacccgccattttctccatccttgaagcaacaccttcttcac  14525600                                                        --------->LBD16                                                       <---------ANAC55(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ANAC58              <<<<<<<<<TBF1                            <---------ANAC46            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------>MYB83           <<<<<<<<<TBF1                             ------>MYB46(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->HSFC1(2)                               --      <------------------------ANAC81             <---------HSFC1(2)                            -----    ------>ZmHOX2a(2)                             --------->HSFB2a(1)                      <---------ANAC58   --------->GLK1(1)                              <---------HSFB2a(1)                      <---------   <------ZmHOX2a(2)                             <---------TOE1(2)                         <---------ANAC58   <---------GLK1(1)                             ------->TEIL                              <---------DAG2  <---------ARR11(3)                          --------->ANAC58                        ===============  --------->ARR14(2)                        <---------ANAC58                          ===============  <---------ARR14(2)         <<<<<<<<<TBF1  <---------ANAC58                          ------>ZmHOX2a(1)  --------->ARR11(3)      <<<<<<<<<TBF1 --------------------->WRI1                  ------>ZmHOX2a(2)  --------->AGP1       <<<<<<<<<TBF1    <----------DOF2--------->ANAC55(2)         <------ZmHOX2a(2)  <---------AGP1 <<<<<<<<<TBF1  <<<<<<<<<TBF1 --------->ANAC58                    <---------ARR14(2)  <-----------ARR10  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        --------->ARR14(2) <---------CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58           --------->ARR11(3) <---------At4g35610<<<<<<<<<TBF1  <<<<<<<<<TBF1<---------ALFIN1               <---------ANAC46 -----   ttcagatctcttcttcttcttcttcttcttcttcttcttcttctttgctcgcaccttccgtgctattgtatttctagggtttcggatcctgtgccttacc  14525700          --------->ALFIN1    ----------->HVH21   --------->DEAR3(2)   ------>ZmHOX2a(2)                                                                  ------>ZmHOX2a(2)  <------ZmHOX2a(2)                                                                  <------ZmHOX2a(2)  --------->CCA1(2)                                                       ------>ZmHOX2a(2) <---------ARR14(2)                                                      <------ZmHOX2a(2)          < --------->AGP1                                                         <---------ARR14(3)        <-- --------->ARR14(2)                                                     --------->ARR11(3)        <-- --------->ARR10   <---------GLK1(1)                                    <---------ARR14(2)        <-- ---->TOE2(3)----------->GT1                                            --------->ARR14(2)   -------- -DOF2 <---------DEAR3(1)                                         <---------WOX13(1)--------->ARR14(2) =========HOX2a_HOX2a                                           --------->ATHB12    <---------ARR14(2) ========HOX2a_HOX2a  <-----------GT1        <----------DOF2   <---------YAB1  <---------ANAC46  <--- ---->TOE1(3)<---------ANAC46    <---------CCA1(2)   <-----------GT1    <---------ARR11(3)  <--------   ttagatccgacggtggagtagaaatcactctccctgtctcttcccttcttttttgtttccagtttttgattgaagatcccttcgtggatccactataatg  14525800                              --------->ANAC58                              --------->ANAC58                           <---------SPL7                         --------->MYB59 --------->ARR14(2)      <---------------AtSPL8 <---------GLK1(2)       <---------------AtSPL3 <---------ARR14(2)     <-----------RAV1(2) ------NtERF2         <-----------HVH21 -------ANAC46    ----------->RAV1(2) -------ANAC58  --------->ANAC46        ------>ZmHOX2a(1) -------ANAC58  --------->ANAC58  --------->ARR14(2) ->YAB1         --------->ANAC58  <---------ARR14(2) ------LBD16 <---------ATHB12<-------TEIL       ---------->ID1              <---------AHL20(2) -YAB1     --------->WOX13(1)--------->SPL7 <----------DOF2       <---------At4g35610 <---------AHL20(2)   gcggattctcagccaatcacgcctggtcaggtacggtatctcctaactttgtttttttttgaagcttcagcgtcttcttaaatttcatttttttgctacg  14525900              --------->ICU4         --------->GLK1(1) <------MYB46(1)      --------->ARR14(2)            <---------ARR11(3) <------MYB83      <---------ARR14(2)  <-------GAMYB       <---------YAB1                               --------->ZAT14   <---------TOE2(3)     <-----------RAV1(1)--------->YAB1                 <-----------GT1 <---------ZAT14   gtttcaaggatttgaaatgaatagtttctgttgaacgagatttctactataatcgataggttgtggagtaattgaatttacaatttggattagtttacta  14526000  Previous    Next  AGI:  At2g34400.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64052.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 14523317    to: 14525265    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g34410.1    Description:  O-acetyltransferase family protein. similar to acetyltransferase-related [Arabidopsis thaliana] (TAIR:AT1G29890.2); similar to O-acetyltransferase-related [Arabidopsis thaliana] (TAIR:AT5G46340.1); similar to acetyltransferase-related [Arabidopsis thaliana] (TAIR:AT1G29890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69621.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44945.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66908.1); contains InterPro domain Cas1p-like (InterPro:IPR012419) Range:  from: 14525485    to: 14529218    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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