Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------ALFIN1                                             --------->ATERF1(1)                                             <------NtERF2                                            <<<<<<<<<AtERF-3                                            <<<<<<<<<AtERF-4                                            <---------ERF1                                            <---------RAP2.3(1)                                            <---------ORA47(2)                                            ------>NtERF2                                           <---------RAP2.6(2)                                           --------->ATERF1(2)                                           --------->bZIP60(1)                                           <---------ATERF1(2)                                           <---------RRTF1(3)                              ----------                                           <---------RAP2.3(2)                         --------->At4g35610                                           <---------RAP2.3(3)                         <---------At4g35610                                           <---------DEAR3(1)                          --------->LBD16                                  --------->ANAC46    <---------At4g35610         --------->ZAT2                                  --------->ANAC58    <------NtERF2               <---------GLK1(1) -                                  --------->ANAC58   --------->ANAC58             <---------ZAT2    <                                 <---------At5g28300 --------->ANAC58           ------->GAMYB -------                                 <---------LBD16    --------->ATERF1(2)     --------->TOE1(2) <------ ------->ANAC46      <---------ANAC46     --------->RAP2.6(3)      ----------->GT1--------->At4g35610   cccacaagagtcactacatggttgtgttgagcattcacggcaatggcggcacagccagcaaatatcagatagtaagttccaacgagctccgctaagagct  14522600                                                                                                 ----                                                                                                 <---          <---------ZAT18                                                                       <----     ---------->DOF2                                                                            <----  <------ZmHOX2a(2)                                                  <----------DOF2            <---- ->ARR10  --------->ZAT18                                          <---------HSFC1(2)           ----- -------->At4g35610                                                --------->HSFC1(2)       <-------- ---------At4g35610             --------->ZAT6          ----------->GT1             --------->DAG2 -->At4g35610        --------->ICU4                    ----------->GT1             ---------->DOF2 ---At4g35610      <---------TOE1(2)         ---------->DOF2 ---------->DOF2----------->GT1 <--------   gcagatcaaaagtgctcatcgtaagtatcagttaacacaaaaacttgaaaagcctatgggttaaaaagaagctttgaagagtgaataaagcagtgcttcc  14522700                                                         --------->SPL7                                                        ------>NtERF2                                                       ----------->HVH21                                                      <------NtERF2                                                      --------->ATERF1(1) -->ZmHOX2a(1)                                       <---------ATERF1(1) ------------AGL15                                   --------->LBD16 -------------AGL2            --------->ANAC58      <---------ANAC46 -------------AGL3          <---------AtLEC2        --------->ALFIN1     <-------GAMYB -------------AGL1     <----------DOF2              <---------DEAR3(1)  <---------MYB46(3) ---->TOE2(3)         <---------DAG2               <---------LBD16      --------->MYB111(2) -ANAC58            -------->P--------->ANAC58   --------->DAG2         --------->MYB52(2) -ANAC58           <-----------GT1             ---------->DOF2          --------->MYB55(2)   tcaatttggactgagataaacttaccttttgcaagaaatggacagagagcaaaggcggggacgatgactcgtgtttgttggaaggaagagaagtgtctgc  14522800                                            <----------DOF2                                           <---------ANAC58                                           <---------ANAC58                                           <---------ANAC46                                        <--------P                                       <-------GAMYB                                      <---------MYB46(3)                                    --------->LBD16                                --------->HSFB2a(2)                                   <---------ANAC58                                <---------HSFB2a(2)                                   <---------ANAC46                                --------->LBD16                                   <---------ANAC58                       <----------DOF2                                <XXXXXXXXXXXXXXXXXXXXMIR420 <-----------HVH21     <---------TOE1(1)             <---------TOE2(3) <---------GLK1(1)  --------->ZAT18       ---------->ID1        -------         <----------DOF2   ----------->RAV1(1)  <---------At4g35610    <-----------GT1      ---------   aagagaagacgctttgatgttgagcacaacaacatttccgtggttgcttttgctcactgatatgtcatccatttttctttttgtccgagaaatagaaaga  14522900                                                     <---------AHL20(2)                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                   <---------CCA1(1)                                                   <---------RVE1(1)                                                  --------->ARR11(3)                                      --------->ANAC55(2)                          <---------YAB1          <---------ARR11(3)                      <---------WOX13(1)          <---------GLK1(2)        <---------ANAC58  --------->DAG2    --------->ATHB12  <---------ANAC55(1)                  <---------ANAC58 ---------->DOF2   <---------YAB1     <---------ANAC55(2)                  <---------ANAC46     <---- ---->GT1        <----------DOF2      <---------ANAC46           <-----------GT1              *TSS ->DOF2 <---------ANAC46 <---------TOE2(3)       <---------RVE1(1)---------->ID1              -------   aaaaaaagttctgtataagctttgattgatgtttgaagttatgtgtttgagagattttttttttttttttccttcttgtgtgtttgagagattgtaatga  14523000                   <---------DAG2                   <----------DOF2          --------->YAB1       <----------DOF2      <---------------AGL15      --------------->AGL15                                                <---------ANAC58     ----------------->AGL3          --------->At4g35610       ----------->GT1    <---------At4g35610     ----------------->AGL2          <---------At4g35610      --------->DAG2     --------->ANAC46     <-----------------AGL3       ---------->DOF2            ---------->DOF2<----------DOF2 -----TOE2(3)   <-----------GT1 ------>MYB46(1)        --------->ZAT18     <---------ANAC58 -->ICU4<-----------TBP         ------>MYB83      ---------->DOF2        <-----------GT1            <   ggtttcttccttttatagttactttaccaaaaccaaataagcagactgagaacaaagtgaacaaaaagtcaaattttgcttttcagcaacttgctaaacc  14523100                                                                                                  ---                                                      <-----------RAV1(2)                  --------->LBD16              <---------ANAC46                       --------->At4g35610                  --------->ANAC58        <---------AHL20(2)                --------->At4g35610                             --------->ANAC58  --------->YAB1                          <---------At4g35610                        --------->ETT(2) <---------YAB1                 --------->At4g35610  <---------At4g35610             <---------ETT(2) ---------ARR11(3)              <---------At4g35610 ----------->RAV1(1)  ---------->DOF2  --------->ANAC46   aaaatcatagtttatttagtgtatatttgttttaagctgaatactgctgaattgcagcagatggttttggagagcaaaagacacaggtcgacccgaaata  14523200                                                                --------->ZAT14                                                                <---------ZAT14                                                           ==========================================                                                           <---------ANAC46                                                           <---------TGA1a                                                      --------->At4g35610             ----------->GT1                          <---------At4g35610 <---------AHL20(2)  <---------YAB1                            --------->TOE1(3)   --------->ZAT18                   <--  --------->ICU4                            --------->TOE2(3)   <---------ZAT18             <-------- <---------TOE2(3)                          <---------MYB59<---------ANAC58            <-----------GT1 ------>ARR11(3)     ------------>CBF    <-----------GT1   <---------ANAC58      ------>ZmHOX2a(1)<--   gataatgtttagaaagagtcaaatccaattcttgtttctggtttaacctaaaccgaggctgacttgtgcaccatttttaattcctgtttgtactctttga  14523300                                                                                                    -                                                                                                   <-                                                     ------>NtERF2                                ---                                                    --------->ANAC46                             <---                                                  <---------At5g28300                            <---                                                 <-----------GT1                              ------- ==bZIP_DOF                                    <----------DOF2                                ------- -------DAG2                               --------->HSFB2a(2)             <XXXXXXXXXXXXXXXXXXXXXMIR830* --DOF2                               <---------ANAC58         ------>ZmHOX2a(1)              ------- --------DOF2                         <---------ANAC58        --------->TOE2(3)               -------   ctttatgagtttgcaaatgctcatcaaaccagagaaactagcgttctcgatttaccgccaatttcctaaattcaaacctagacaatttgaagaagcacga  14523400      =============================HOX2a_HOX2a      ------>ZmHOX2a(2)     ==============================HOX2a_HOX2a     <------ZmHOX2a(2)    --------->ARR11(3)    <---------ARR14(2) <------NtERF2 ------>NtERF2 -------->LBD16                                                                          --------->ANAC46 --------DEAR3(1)                                                             <---------ARR11(3) --->NtERF2                                                                   --------->ARR11(3) ------bZIP60(2)                                --------->LBD16        --------->ANAC58--------->ZAT6 ------O2                   ------>ZmHOX2a(1)  <---------ANAC46        --------->ANAC58<---------ALFIN1 ---->HVH21           <----------DOF2         <---------LBD16       <-------TEIL     <-----------GT1 -->ANAC58        <----------DOF2          <---------GLK1(1) ==========================RAV   -------- -->ANAC46       <---------HSFB2a(1)      ------->TEIL       ----------->RAV1(1)  ----------->GT1 -->ANAC58       --------->HSFB2a(1)     <---------CCA1(2)  <----------ID1 <-----------RAV1(2)   cgcggcgatctcgagagggactttcttttcctgttgaaaaaatgtatctccgtgaaccaattgcgacagattcaagcccagatgttgttacactccgtcg  14523500  Previous    Next  AGI:  At2g34390.1    Description:  NIP2;1/NLM4 (NOD26-LIKE INTRINSIC PROTEIN 2;1); lactate transmembrane transporter/ water channel. Identical to Aquaporin NIP2-1 (NIP2-1) [Arabidopsis Thaliana] (GB:Q8W037;GB:O64706;GB:Q1ECK8); similar to NLM1 (NOD26-like intrinsic protein 1,1), water channel [Arabidopsis thaliana] (TAIR:AT4G19030.1); similar to nodulin26-like intrinsic protein [Pisum sativum] (GB:CAB45652.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) Range:  from: 14521566    to: 14522994    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g34400.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64052.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 14523317    to: 14525265    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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