Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------ARR11(3)                                                         --------->ARR11(3)                                                        <---------GLK1(1)                                             ----------------->AGL2                                             ----------------->AGL3                                             ------->GAMYB                                           --------->ANAC58                 --------->ANAC46          --------->ANAC58             ------>NtERF2               --------->MYB46(3)                            --------->LBD16            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->GLK1(1)------>ZmHOX2a(2)          <       <------ZmHOX2a(1)      <---------CCA1(2)     --------->YAB1      <------ZmHOX2a(2)           - ----TaNAC69(2)<---------ALFIN1   <----------DOF2 <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->TOE1(2)   gatttaagaggatgccaccacgtagtgtctccatctcttttcgacaacccaaaatcagaaatcttcaatttgagatcgcagacagaaccagggaaaacaa  14480100                                                                                                  ---                                 <---------ANAC58                                                 ---                                 <---------ANAC58                                               =====                 <------ZmHOX2a(2)                                                              <----                xxxxxxxxxxxxxxxx>smallRNA(s)                                                    <xxxx              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                <----------      <---------LBD16         <xxxxxxxxxxxxxxxxsmallRNA(s)                  <---------ZAT14   <------     <---------LBD16    --------->ZAT14                         <xxxxxxxxxxxxxxxxsmallRNA(i)  ------- --------->KAN4(2)------>ZmHOX2a(2)                          --------->HSFB2a(2)       <---------YAB1 ---------HSFB2a(1)     <---------ZAT14                      <---------HSFB2a(2)<----------DOF2<----- -------->HSFB2a(1)     <---------ZAT18                  --------->TOE1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ggatgttctcgggtttgagatcgcagtgaacatagccgtgtctgtgaattgtggctaaaccctcgagaagcatacgagtaaactttctgatcatcggatc  14480200                                                         --------->ANAC58                                                         --------->ANAC58                                                        --------->SPL7                                                     <---------ANAC58                                                     <---------ANAC46           <---------MYB46(3)                        <---------ANAC58           <---------ANAC46                         --------------->AtSPL8          ---------->ID1                            <------NtERF2        <-----------RAV1(1)                       <---------DEAR3(1)            <---------ANAC55(2)    <---------AHL20(2)                           --------->ZAT2                 --------->ANAC55(2)    --------->AHL20(2)                           <---------At4g35610            --------->ANAC46 ------>ANAC58                                   <---------ZAT2                 --------->ANAC55(1) ------>ANAC58                                  --------->LBD16                 --------->ANAC58 ===================RAV                         <---------ATERF1(1)             --------->ANAC58 -------RAV1(2)                              ------>ZmHOX2a(1)          <---------ZAT18 xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ANAC58--------->ZAT14   <---------ZAT14 -------AGL1           <-------TEIL   --------->ANAC58<---------ZAT18   --------->ZAT14 ---ARR14(2)      <xxxxxxxxxxxxxxxxsmallRNA(i)<---------LBD16        <---------ANAC46         <------ -->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)------>NtERF2    <------ZmHOX2a(1)         ---------- -ZmHOX2a(2)<-------GAMYB          --------->WRKY18(1)<---------SPL7---------------------->TaNAC69(1)   aggcaattttttgtcgttgaatcggtccatgaaatcgctcaagcttcctccggctgcgtactccataggaatcgtgtactctacgtaacccttgtcgtta  14480300                                            -------->P                                        --------->ANAC58                                        --------->ANAC58                                     <---------HSFB2a(2)                                     --------->HSFB2a(2)              <---------At4g35610 --------->GLK1(2)            <---------ARR14(2)              --------->At4g35610<---------ARR14(2)            --------->GLK1(2) ---MYB52(1) --------->ANAC46    <---------GLK1(2)             --------->ARR14(2)              <----- >ID1     --------->ANAC46       --------->ARR14(2)           <---------GLK1(2)                <-----   agtctctgttctactccgctaccgtagcattggacgattctcgagcaacccttgaatttagacagaatctgaaactcttcgtagagagacttagcatcgt  14480400                 <------NtERF2               <---------ANAC46              <------NtERF2              --------->RAP2.3(1)              --------->ATERF1(1)             <---------RAP2.6(1)             <---------ORA47(2)             ------>NtERF2             <---------ATERF1(1)                                                ------>MYB46(1)             <---------ERF1                                                     ------>MYB83             <---------RAP2.3(1)                                             --------->HSFB2a(1)            --------->DEAR3(1)                                               <---------HSFC1(2)            <---------RAP2.3(2)                                              --------->HSFC1(2)            <---------RRTF1(3)                                               <---------HSFB2a(1)            <---------DEAR3(1)                                              <-----------ARR10         --------->ANAC46                                                   ------->TEIL        <---------LBD16                                            <------ZmHOX2a(2)        <---------At5g28300                             --------->DAG2   <---------MYB52(2) <--------      <---------REM1(2)                      --------->YAB1       <---------ARR14(2)    --------->ARR14(2)   xxxxxxxxxxxxxxxx>smallRNA(i)           <----------DOF2         --------->ARR14(2)    <---------ARR14(2) ------TGA1<---------ABI4(1)  --------->ANAC46 <---------YAB1   --------->DEAR3(1)  --------->LBD16 ------HVH21<---------RAP2.3(3)<-----------HVH21      ---------->DOF2  --------->MYB52(1)--------->GLK1(1)   cagaggttttcacggcggcgtagagagtctcaacgtcgcatcgtcttttataactgaaaaggctcaccgatccaaacgaaccttcccccagatacctttc  14480500                              <---------YAB1                        <---------ARR11(3)                           <----------DOF2                          --------->ARR11(3)                          <XXXXXXXXXXXXXXXXXXXXMIR2937             --------->RVE1(1)              ---                       <---------GLK1(2)                 <---------WOX13(1)                       <--                    <---------WOX13(1)              --------->TOE2(3)                  <---------ANAC46                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <------------CBF               <---------ANAC58                   <------------CBF         ----------->RAV1(1)    --------->CCA1(1)   <---------ANAC58 -DAG2            --------->ATHB12   <----------DOF2--------->TOE1(3)       --------->GLK1(2)     ---   gaactccattgcaaatagaacgattgattcttttgatagcttttggcaacaaaaccctaattgactgaaatatctgagaatttgtaatagcttggaaacc  14480600                                                                                    --------->WOX13(1)                                                                                 --------->ARR11(3)                                                                                 <---------ARR11(3)                                                                               <---------TOE2(3)                                                            ----------->RAV1(1)<---------TOE1(3)                                                --------->AHL20(2)         <----------DOF2                                                <---------AHL20(2)  <---------AHL20(2) --->MYB46(1)                      <---------ICU4      <-----------GT1<------------CBF      <-------- -------CCA1(2)       --------->YAB1         --------->GLK1(2)     --------->AHL20(2) <---------ATHB12 --->MYB83        --------->AHL20(2)    <---------ANAC55(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   aaatctcaagttgtttctgaataaatataacatcagataattacgagaatttatatttatcccaacattttaaattggtttaaggtctatcatttatccc  14480700                   --------->ARR11(3)                 <---------TOE1(3)                 <---------TOE2(3)                                     <----------DOF2             <----------DOF2                --------->ANAC58          <---------ANAC58      <---------AHL20(2)                    --------->ANAC58  <----------DOF2     --------->AHL20(2)            <---------TOE1(2)       <-----------GT1--------->YAB1    <---------AHL20(2)            ------>ZmHOX2a(1)   <----------DOF2 <---------ANAC58 ---GT1 <------------CBF       <---------YAB1 ---------->DOF2 <---------DAG2   <----------ID1   aactattttaaattggtttaaggtctagcatttatcctagtttcagacgaaagtgactttataactttatttgctttcataagaacaaaacaaaactcat  14480800                                --------->LBD16                               --------->HSFB2a(2)                               <---------HSFB2a(2)                         <---------YAB1                     ------->GAMYB                  --------->MYB52(1)                  <---------DOF5.7(2)                                 <-------TEIL                <--                 ----------->HVH21                <---------DAG2---------->DOF2               <------               --------->At4g35610                <----------DOF2    --------->CCA1(2)      <--------               <---------At4g35610<---------GLK1(2)      ---------->DOF2                   ----------   cttgtatacattttgagagctaacggtatgattccagaatttatgtatacaacttttctcaaagccaaaagatacaaatactactaagaaacaaggtcaa  14480900                        <---------ANAC58                        <---------ANAC46                        <---------ANAC58        <---------ZAT14                       <-----------------------TaNAC69(2)                   ---------->DOF2     <----------DOF2                        <----------DOF2                --------->TOE2(3)      <---------DAG2                    <----------DOF2 ------->TEIL--------->ANAC58        ------>MYB46(1)                   <------------------------ANAC81 -------ATHB12  --------->TOE1(3)    ------>MYB83                   <----------DOF2 ---WRKY12   --------->ANAC58     --------->MYB46(3)               <---------ANAC58   <---------ANAC46 ---HVH21--------->ANAC58   ---------->DOF2     --------->ZAT14    <---------ANAC58   <---------ANAC58 ->GT1   --------->ANAC58 ----------->HVH21 <-----------GT1 --------->ANAC55(2)       <---------ANAC58   atgaatttgataagcaagccttaaaggcgtgaaagaaccaacttttttactgaactatattcaagtgatgcttttcttttcttttctgacttgtttaagc  14481000  Previous    Next  AGI:  At2g34290.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G27790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24628.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 14479712    to: 14480509    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g34300.1    Description:  dehydration-responsive protein-related. similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G29470.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G29470.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68521.1); similar to putative ankyrin-like protein [Lactuca sativa] (GB:AAP72961.1); similar to unknown [Populus trichocarpa] (GB:ABK94843.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159) Range:  from: 14480782    to: 14484509    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version