Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                                -----                                                                                              <------                                                                                              -------                                                                                            <--------                                                                                            ---------                                                                                          --------->AHL20(2)                                                                                        <---------AHL20(2)                                          --------->AHL20(1)                            --------->AHL20(2)                                          <---------AHL20(1)                          --------->AHL20(2)                 --------->ICU4          --------->YAB1        <---------TOE2(3)      <---------AHL20(2)  --------->AtLEC2 --------->YAB1   <-------TEIL<---------TOE2(3)                   <---------AHL20(2) ----ANAC58------->MYC3            --------->CCA1(2)      --------->ATHB12 <----------DOF2<---------AHL20(2) ----ANAC58<-------MYC3         <---------TOE2(3) <------ZmHOX2a(1)  --------->ZAT6 --------->AHL20(2)   tgcaatgcaaacatgtgtcaatattagttgatttaagatacaaaaatattaaggactaaatggttgagataatactactttgatatatatatatatatat  14447300                                                                                 -------->HAHB4                                                                                 --------->YAB1                                                                                 --------->AHL20(2)                                                                              --------->YAB1                                        <------ZmHOX2a(1)                     <---------ICU4                                       --------->ICU4       ----------->GT1  --------->AHL20(2) <-----------GT1        --------->AHL20(2)           --------->ANAC58        <---------AHL20(2)   <-- -----AHL20(2)          <---------AHL20(2)           --------->ANAC58        --------->ICU4 <-------- ---->AHL20(2)         <---------AHL20(1)       >>>>>>>>>>WRKY38             <---------ATHB51  <----- ---AHL20(2)           --------->AHL20(2)       >>>>>>>>>>WRKY43           --------->YAB1 <---------ICU4 -->AHL20(2)           --------->AHL20(1)       >>>>>>>>>>WRKY26      ----------->GT1    --------->ICU4 -AHL20(2)             <---------AHL20(2)    --------->At4g35610     ----------->GT1     <---------YAB1 >AHL20(2)       --------->TOE2(3)  <--------P ----------->HVH21 --------->ICU4 <---------YAB1<------   atataactatattctataaacttaatttatttgagagggtaaggattagatgaccaagaaattggtaaaaattggaaaaataattatagacattattatt  14447400                                                                                         --------->KAN4(2)     <---------CCA1(1)                                                                  <---------ICU4     <---------RVE1(1)                                                               <---------ICU4    <---------ARR14(3)                                                               <--------ATHB1<-    --------->ARR14(2)                                                               --------->YAB1--    <---------ARR11(3)                                                               --------->ATHB12    --------->ARR11(3)                                                              <---------ATHB12    <---------ARR14(2)                             ------>ZmHOX2a(1)                --------->ICU4---    --------->ARR14(3)                            --------->TOE2(3)            --------->YAB1     --- ---------GT1                                  <-----------GT1       <---------AHL20(1) <---------KAN4(1) -YAB1                                 <---------MYB52(1)            --------->AHL20(1)<---------YAB1 ----YAB1                         <---------ARR14(2)           ----------->GT1----------->HVH21   <-- ---AHL20(2)                      --------->ARR14(2) ---------->DOF2--------->ICU4  <---------YAB1<--   ttacaagatattctcaaatggctagagatttgtgaagttctgttttttttttcctcaaagttcaagtgtaatatttttcgatgacaatgattattccaaa  14447500              --------->YAB1                                                      <---------ATHB12   <---------AHL20(2)                                                            ------>MYB46(1) --------AHL20(2)                                                                ------>MYB83 ------->AHL20(2)                                                              <---------MYB46(2) ------>AHL20(2)                   --------->ATHB51       --------->YAB1       --------->MYB46(3)   - ------>AHL20(1)                   --------->ATHB12   ----------->GT1    <---------ICU4     <-------- -------AHL20(1)      --------->At5g28300          <---------ZAT6     --------->YAB1        --------- -------AHL20(2)     ----------->GT1 <---------WOX13(1)  <---------YAB1  --------->YAB1  <---------At4g35610   tttatttttttgttaatcgtaaacagtgaattttgcataattggtttgaattagagttgataatagttgttctcatcatcaccaaacattcttctgctta  14447600                                                               ----------------->AGL1      <---------     --------->MYB52(1)                               <---------------AtSPL3             ---------->DOF2 --------->DAG2                                       <---------------AtSPL8          --------->HSFB2a(2) --------->DOF2                                      <-------GAMYB                    <---------HSFB2a(2) -At4g35610                       --------->YAB1    <---------MYB46(3)            <-----------TBP >At4g35610 <----------DOF2    --------->YAB1      <---------AtMYB61        --------->ANAC46     ----   ccaaaagtaagggactttcattagcaaaaacaaaaatcatacacaaatgggttttggttgtactgtccaaaatggaacacacagttttatagaaagacaa  14447700                                                                 <---------CCA1(1)                                                                 <---------RVE1(1)                                                               <<<<<<<<<RAP2.2                                                         <---------RVE1(1)                                                        <---------ARR11(3)                                                      ----------->ARR10                                                  ----------->RAV1(2)     <---------At4g35610                           *TSS                   <---------At4g35610     --------->ANAC58                          ---------->DOF2         --------->ZAT2<---------ARR11(3)                ---                    ---------->DOF2               --------->At4g35610     --------->ANAC58      <----     --------->ANAC58<---------TOE1(3)            <---------ZAT2--------->ARR11(3)  ---------->DOF2 < -ID1--------->ANAC58<---------TOE2(3)          <-----------RAV1(2)     <---------AtLEC2 --------->DEAR3(1) ----->MYB52(1) <---------ZAT6          <---------ATHB12--------->ARR11(3)--------->ANAC46------>NtERF2   aactgaaacggcaagtgagagttaaagtaaaaggaaattgcaatcgagagccagctgagatttttagatattttgcaggtaactcttaacgccgagcata  14447800                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                  --------->CCA1(2)                                                 <---------ARR14(2)                                                 <---------AGP1<---------At4g35610                                                 --------->AGP1--------->At4g35610                                                 <---------ARR11(3)                      <---------YAB1             --------->ARR14(2)                    <---------At4g35610          <-----------ARR10 ------>TOE2(2)   --------->DAG2             ---------->DOF2 --------->DAG2   <----------DOF2      <- ---TEIL ---------->DOF2                 --------->At4g35610---------->DOF2  --------->TOE2(3)     -- -------TEIL     ---------->DOF2 <-----------GT1 --------->ARR11(3)       <-----------GT1 <----------   catacgtttctcaaagacataaagctgattgtgtttctccatttgctgaaagatctgagccataaagctgaaatagaaaccttttttgtgttttgttgtt  14447900                                                                               <---------ANAC46                                                                            --------->GLK1(2)                                                                           <---------GLK1(2)                                                                           <---------ARR14(2)             <---------At4g35610                <---------ANAC58      xxxxxxxxxxxxxxxx>smallRNA(s)         ----------->HVH21                      <---------ANAC58     <---------ARR14(2)    --------->GLK1(2)                  <---------DAG2     <----------DOF2  --------->ARR14(2)   <---------GLK1(2)                   <----------DOF2<------MYB83   --------->ARR14(2)   --------->ARR14(2)           <-------TEIL   <---------STY1(2)     --------->ARR11(3)   <---------ARR14(2)           --------------->AtSPL8<------MYB46(1)<---------AGP1 ----------->ARR10      --------->TOE1(3)      --------->STY1(2)  --------->ALFIN1 --------LBD16          --------->TOE2(3)   <---------ANAC58    <---------ANAC46     <---------TOE1(3) ------->LBD16  --------->At4g35610 <---------TOE1(2)<---------MYB46(3)------>ZmHOX2a(2)            < -RAV1(1)----------->TGA1  ---------->DOF2  <---------ANAC58   <---------TOE2(3)     <---------TOE2(3)   ccccagattctctgacgctgcttaaaccttaaagttcgtagctttttcttgctagtgggtcttttgaggtggatctggattctgggtaaggttttgtttt  14448000                                                           --------->ATHB51                                                           --------->ATHB12                                                           -------->ATHB1                                                           <---------ICU4                                                          <---------ATHB12                                      <---------ARR11(3)  --------->ICU4                                    --------->ANAC58      <---------ATHB51          ----------->GT1           --------->ANAC46      <---------YAB1         --------->ZAT6             --------->ANAC58    <---------------AGL15    <----------DOF2         <---------TOE1(3)           --------------->AGL15        <----------DOF2 <---------ARR11(3)      <---------YAB1                <-----------------AGL3 <---------MYB52(1) --------->ARR11(3)   --------->ARR11(3)               ------------>ATHB5    <-------GAMYB          < ---------CCA1(2)     <---------ARR11(3)    <-----------GT1<--------ATHB1   <-----------RAV1(1)     <   ttatatctttaccagtaaattgaagttcttatggtttcaagaaattttacagggttttcaattattggaatgttgtttctgttggctctttatctgaata  14448100                            <----------DOF2                     ------>ZmHOX2a(2)                     =====================HOX2a_HOX2a                    <------ZmHOX2a(2)                    ======================HOX2a_HOX2a                   <---------AGP1                   <---------ARR14(2)                   ------->TEIL                   --------->ARR11(3)                   <---------ARR11(3)                   --------->ARR14(2)                  <---------CCA1(2)                --------->ANAC55(2)                <---------ANAC55(2)                            ---------->ID1              --------->DAG2                <---------ANAC46                --------->ANAC58                          ---------->DOF2              --------->MYB52(1)                --------->ANAC58              <---------AHL20(2) --------->YAB1<---------LBD16                ---------->DOF2<-----------RAV1(1)    ------->TEIL <<<<<<<<ARR2--------->ARR14(2)     --------->ARR11(3)    <----------DOF2    --------->AHL20(2) <<<<<<<<ARR1<---------ARR14(2)    <------ZmHOX2a(1)    ------>ZmHOX2a(1)    <---------AHL20(2)   caatcttactaagaggttacggatcttggactttgtaggaacttgagcaaaagccatcctcttttgttgtatatatgaattaaatggaccctaaaagttg  14448200  Previous    Next  AGI:  At2g34200.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G05830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48034.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain Zinc finger, variant RING-type; (InterPro:IPR011016) Range:  from: 14447727    to: 14449084    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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