Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->YAB1                           --------->YAB1                           --------->TOE2(3)                          ----------->GT1                          <---------YAB1                       <---------AtMYB61                       <---------MYB52(1)                    <----------DOF2                       --------->ARR14(2)                --------->ANAC58                       <---------ARR14(2)                --------->ANAC58 ----->GT1           --------->LBD16                     --------->ANAC46   <---------ANAC46        - ---TOE2(3)        <---------LBD16 <-----------GT1     <---------ALFIN1   <---------ANAC46    <------   taacaaaaacatatatatgtttccggttatgttaattatactacttgagaatttctcacacggctttggttttgtattgtgtaggcttacagagtcacca  14324400                                                         --------->YAB1                                                        --------->ICU4               ------>ZmHOX2a(1)                                                        <---------YAB1               --------->LBD16                 --------->GLK1(2)             <---------YAB1                       <---------LBD16 <---------AHL20(2)         ---------->DOF2<----------DOF2  <-----------GT1        ----------->RAV1(2) -------->AHL20(2)   <-----------HVH21     <---------DAG2<---------ICU4    --------->At5g28300 ---At4g35610   <---------GLK1(2)<----------DOF2  ------->TEIL            ----------->GT1       <----   gataaaattagagagccagaatgtgtcattgaaagctttctctcactttatgaaacttattattaccaaaaacacactgtaaaactcctggattttgttt  14324500                                                                  <---------ARR14(2)                                                 --------->AHL20(2)   --------->LBD16                                              --------->WOX13(1)  --------->ARR14(2)                                           <-------GAMYB          <-----------GT1           --------->At4g35610            ----------->GT1        <---------CCA1(2)                 --           <---------At4g35610            <---------MYB46(3)  <---------AHL20(2)                -----     ---------->TaMYB80                  <---------TOE2(3)   --------->AHL20(2)                 <----  <---------ANAC46                     <---------ANAC46  <------ZmHOX2a(1)        <---------ANAC55(2) -----AHL20(2)                      <-----------RAV1(1)<---------TOE2(3)          ----------->GT1 <--   atttgggtatatcagatgctactacagatagtttaccaatgttgtggttaatcaaataaggaattttatatccgtataaaaaatatgtaaaattgttttt  14324600                                                                  --------->TOE2(3)                                                                ------>NtERF2                                                             --------->At4g35610                                                             <---------At4g35610                                                           --------->ALFIN1                                                         ============================================bZIP_DOF                                                         <---------ANAC58                                                         <---------bZIP60(2)                                                         <---------ANAC58                                                         --------->TGA1a                                                         <---------TGA1a          --------->ARR14(2)                             <---------O2                               -      --------->ETT(2)                                   --------->O2                               <     ---------->ID1                                      <---------ANAC46              <---------MYB52(1) ------->ARR11(3)                                    <---------WOX13(1)              <---------ANAC58 ---->AHL20(2)                           <----------DOF2<-----------------------TaNAC69(2)<----------DOF2 -----AHL20(2)                <---------AHL20(2)    <------------CBF                 <---------ANAC58 -------CCA1(2)            ------->TEIL  ==========================bZIP_DOF         --------------->AtSPL8   aaatcttgtcgatatatgctactaaaatgtattttttggtttactttggtcttagattgacgtggctgcctcaaactgccttcattttcgttcttttttt  14324700                             --------->YAB1                             <---------ICU4                          --------->YAB1                  --------->AHL20(2)                --------->At4g35610                      <------ZmHOX2a(2)                 --------->YAB1                     *TSS                               <---------HSFB2a(2)              --------->YAB1--------->ICU4       --------->At4g35610                   --------->HSFB2a(2) -------->HSFB2a(2)    ----------->GT1         --------->YAB1     --------->YAB1       --------->HSFC1(1) ---------HSFB2a(2)    --------->YAB1   ---------->DOF2    ---------->DOF2      <----------DOF2    >>   ttttagaaaaaaacaagaataaaaatagtaataatcccactaaaaagaatcatcagaagaaaaaagactcataaatctagggctttcttctagagatcga  14324800                                                                    --------->ANAC46                                                                    --------->ANAC58                                                                    --------->ANAC58                                                               --------->MYB46(3)                     --------->GLK1(2)                     <------NtERF2                    <---------ARR11(3)                    <-----------HVH21                    <---------GLK1(2)--------->ARR11(3)  <---------bZIP60(1)                    --------->ARR11(3)                   <----------ID1                            --        <---------ZAT18              <---------GLK1(2)   --------->bZIP60(1)                   ------        <---------ZAT14           --------->HSFB2a(2)    <---------ANAC58                      ------        --------->ZAT18     --------->MYB52(2)           <---------ANAC58 ------->GAMYB        ------ >>>>>>>TBF1       <---------RVE1(1) <---------ARR11(3)  <---------ANAC46--------->MYB46(3)   <------   agaagaagagttcacatagagagattttgttcgtttcgagattttcttcagtcccaatggcgtcaaacaccagcaacgacaatttccagcatagaccacg  14324900                                                ------>NtERF2                                                <---------ATERF1(1)                                              --------->ATERF1(1)                                             ------>NtERF2                                             --------->ABI4(1)                                            --------->DREB2C(2)                                            --------->RAP2.3(3)                                            --------->RAP2.3(2)                                            --------->RAP2.6(2)                                            --------->RRTF1(2)                          ----------->RAV1(1)<---------ATERF1(1)                          ------>NtERF2     --------->ATERF1(2)                         --------->ETT(2)   <---------ATERF1(2)                         --------->DEAR3(1) --------->RRTF1(3)                         ----------->HVH21  <---------ALFIN1                        <------NtERF2       --------->DEAR3(1)                        ------>NtERF2      --------->RAP2.3(1)                        --------->RAP2.3(1)--------->ERF1                       ------>NtERF2       --------->ORA47(2)                                      --                       <---------ATERF1(1) --------->RRTF1(1)                                      <-                       --------->LBD16     --------->RAP2.6(1)                                     --                     <---------At4g35610   --------->ATERF1(1)                                    ---                     --------->At4g35610   --------->DEAR4(2)                                  ------                     <---------LBD16      --------->At4g35610                                  ------                     --------->LBD16      ------>NtERF2                                        ------                   <---------LBD16        <---------ATERF1(1)                           --------->ANAC46                  ------>ZmHOX2a(1)   <---------ARR14(2)                              ===============                 <---------ALFIN1     --------->ARR14(2)                              --------->AtMYB61          --------->MYB46(3)         --------->GLK1(1)        --------->ANAC46        ----------->RAV1(1)     --------------->AtSPL3   --------->ANAC58<------NtERF2 <---------DOF5.7(2)       <---------ALFIN1    --------->MYB52(1)<---------DEAR3(1)  --------->LBD16  <---------WRKY12          --------->MYB46(3)   --------->ARR11(1)------>NtERF2--------->ANAC58         <---------WRKY45         ------>NtERF2---- -------->DOF2<---------ALFIN1--------->ANAC58--------->RAP2.3(1)                  --------->RAP2.6(2) --->ANAC46   --------->AtMYB61   --------->ANAC58         <---------WRKY38(1)    --------->MYB46(3)< --->ANAC58--------->AtMYB61<-----------RAV1(2)--------->DEAR3(1)                --------->At4g35610< --->ANAC58<---------ALFIN1<------NtERF2 --------->ANAC46 --------->DOF5.7(2)   --------->ANAC46 <--- ---LBD16XXXXXXXXXXXXXXXXXXXX>MIR408 <---------GLK1(1)   <-----------HVH21   --------->GLK1(2)-------   gcaaagaaacggaccacctcctccgcggcgacagggaagaaatccgccgcctccgtcttcgtcaacgcgaacttctcagaatcagccaccacagcatacg  14325000   <------ZmHOX2a(1)                                                                                - ------->LBD16                                                                                    --- -----NtERF2                                                                                      --- ---->NtERF2                                                            <-------GAMYB           ----- ------>DEAR3(1)                              <---------LBD16 <---------ALFIN1                  <---- --->ANAC58                                   --------->TOE1(2)    --------->WRKY38(1)         <----- --->ANAC46                                  ----------->RAV1(2) <----------DOF2               <----- --->ANAC58                        <------ZmHOX2a(2)        --------->RAP2.6(2)                ------ ===========RAV                   <---------ARR14(2)        ----------->RAV1(1)               ------- ----->RAP2.3(1)               --------->ALFIN1             <---------ALFIN1               --------->GLK1(1) ------NtERF2     <---------MYB52(1)  <---------At4g35610 ------>NtERF2<---------ZAT6  --------->YAB1 -----------RAV1(2) <---------MYB46(3)--------->At4g35610--------->RAP2.6(2)          <------ZmHOX2a(2) ------LBD16  --------->MYB52(1)  --------->ARR14(2)   --------->At4g35610        <------NtERF2<----- -->SPL7 >>>>>>>>>TBF1     ---------->DOF2   ===========================RAV---------->DOF2 <---------GLK1(1)   ccgcaggagaagaagaaaccggtgtttgtcaaagtggatcagcttaaacctggaacgagcggccacactttgactgttaaagtcgtcgatcagaattccg  14325100                                                --------->GLK1(1)         <---------LBD16                        <---------GLK1(1)        <---------LBD16                         <------ZmHOX2a(2)      --------->ARR14(2)                       --------->ARR14(2)      <---------ARR14(2)                       <---------ARR14(2) -------->TOE2(3)                              --------->ARR11(3)                                 --- ---->TEIL                                     <---------ARR11(3)                                 --- ------>SPL7                                  <------ZmHOX2a(1)                                   --- ---->LBD16                              --------->ZAT2                                   <---------ZAT14 -----SPL7--------->LBD16             <---------ZAT2                                      --------->ZAT14 ----ANAC58   --------->At4g35610  --------->DEAR3(1)        <-----------RAV1(1)       ============== ----ANAC55(2)--------->ZAT2   <---------At4g35610         <---------ANAC58   <---------ANAC58 <----- --->ANAC55(2)<---------At4g35610  ----------->HVH21       <---------ANAC58   <---------ANAC58 ------ -------->AtSPL8       <<<<<<<<<TBF1------>NtERF2------>ZmHOX2a(2)  <---------At4g35610------>ZmHOX2a(1) ----ANAC58   <---------ZAT2   --------->At4g35610         <---------ANAC46   <---------ANAC46 ------   tacctcagaaaccgggagctgcttcttcttctcatctccgacctgctaggatctctgagtgtcttgttggagatgagactgcttgcatcctcttcactgc  14325200                                                                                         --------->ARR14(2)                                                                                         <---------ARR11(3)                                                                                         <-----------ARR10                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                      <---------ANAC46                                                                                    --------->ZAT14                                                                              <------ZmHOX2a(2)                                                                             <---------ARR14(2)      <------ZmHOX2a(2)                                                      --------->ARR11(3)    ------->GAMYB                                                            --------->ARR14(2)   --------->MYB46(3)                                                    --------->MYB52(1)--------->TOE2(3) ------>ANAC58                          --------->GLK1(2)                <---------DOF5.7(2) ------>ANAC46              <---------ANAC46                          --------->TOE1(3)  --------->GLK1(2) ------>ANAC58           --------->GLK1(2)                   --------->HSFB2a(2)   --------->ALFIN1<- ============HOX2a_HOX2a<---------GLK1(2)                    <---------HSFB2a(2) ------>ZmHOX2a(1)<-- ----ZAT2               <---------ARR14(2)                 ------>ZmHOX2a(1)------->GAMYB--------->ARR11(3) --->ZAT14         --------->GLK1(2)   <---------GLK1(2)   ==========================HOX2a_HOX2a  <-- --->ZAT2     ----------->ARR10      <---------TOE2(3)--------->YAB1  --------->TOE2(3)  <---------ARR14(2)   tcgcaacgatcaaggtgagataatccgattctgtgttctaagattctatttttgaatcatcctctcgaatagccttaacgatcctgtggagtatcttagt  14325300  Previous    Next  AGI:  At2g33840.1    Description:  tRNA synthetase class I (W and Y) family protein. similar to ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G28350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65657.1); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305); contains InterPro domain Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485); contains InterPro domain Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; (InterPro:IPR002307); contains InterPro domain Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic; (InterPro:IPR015624); contains InterPro domain Rossmann-like alpha/beta/a Range:  from: 14322020    to: 14324575    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g33845.1    Description:  DNA-binding protein-related. similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT4G28440.1); similar to unknown [Populus trichocarpa] (GB:ABK92882.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 14324752    to: 14326465    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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