Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       -------->ATHB1              ----                                                                     --------->ATHB51           -----                                                                     --------->ATHB12--------->ATHB12                                                                    --------->AHL20(2)      ---------                                                                    --------->ICU4   <---------ICU4 --->ANAC58                            <---------TOE2(3)            <---------AHL20(2)     >>>>>>>>>>MYB80 --->ANAC46                   ------>ZmHOX2a(1)                  --------->AHL20(2) <---------YAB1 --->ANAC58                  --------->TOE2(3)<-----------GT1----------->GT1   --------->ANAC58------ -->SPL7           --------->ZAT18    <-----------GT1  ------>MYB46(1)         --------->ANAC58------ ->MYB52(1)        <---------ZAT18 --------->YAB1      ------>MYB83 <---------ATHB51--------->ICU4   acacatttatgtgcaaattagtggacatattcctcagtaataacgtttttacaaacctacagttggataaattattgagtcactccatgattaaaccaac  14311700                                   ------>ZmHOX2a(2)                              <---------KAN4(2)                           <---------YAB1                      --------->ZAT6                     <---------ZAT14                     --------->ZAT14                                         -------->P                     --------->ZAT18        --------->AHL20(1)             --------->MYB46(3) ------->RAV1(1)     <---------ZAT18<----------DOF2                    --------->DOF5.7(2)          < ---->MYB46(3)   <---------------AtSPL8--------->AHL20(2)             --------->TOE2(3)          ---- >MYB46(3)   --------->AHL20(1)  --------->ARR11(3)                   <----------DOF2           <---- >MYB46(1)   --------->AHL20(2)  <---------ARR11(3)  <----------DOF2  --------->TOE1(3)  --------->DAG2 >MYB83      <---------AHL20(2) --------->YAB1    <---------YAB1  <---------GLK1(2)     ---------->DOF2   aacataagagaaaaataaaatagtacactacgaatgatcttttaaatatgttattcttttttgatacagaaactttaactaccaaaaaaaaaaagcgaat  14311800         --------->ANAC58         --------->ANAC46       <---------MYB52(1)         --------->ANAC58 <------MYB83                                                              -     ---------->DOF2      <------MYB46(1)                                                           < --------->YAB1          <---------AtMYB61   ------->TEIL   <-----------GT1 <---------ICU4       <--- -------TEIL             --------->MYB59     <-----------ARR10          --------->AHL20(2)     <----- ----->ATHB12         --------->ATHB12      <---------GLK1(2)        --------->YAB1           <------ -----ATHB12         <---------YAB1         <---------CCA1(2)  --------------->AGL15  ----------->GT1   gattcataaaaacgcaatgtggtatgtttggtctgttttttagttcgaatctcaacttcttgttaccacaaaaataaaacattacacaatgtaaatttac  14311900                   --------->ZAT6          <---------DAG2          <----------DOF2         <---------ANAC58 -------->ZAT14    <---------ICU4 ---------ZAT14    --------->YAB1 ------ZAT6       <---------ATHB12                 <-----------GT1 ----At5g28300  --------->WOX13(1) <---------GLK1(2)  --------->ZAT6 -----GT1<---------ANAC58--------->TOE2(3)      ------->TEIL      ----------->RAV1(1)       <--------   tgttcagtcttgcttttccaatcactacattagcacatattcttcacatgtattttccactaatctcgcgacaaaatgttcacagtgtttctcagtttct  14312000                                                                                                  <--                                                                                                 ----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                              <------                                         --------->LBD16                                     <-------            <---------ANAC58            --------->ANAC58                     ------->GAMYB   <-------            <---------ANAC58            --------->ANAC46                     --------->TOE2(3)<------          <-----------GT1               --------->ANAC58                     ----------->RAV1(1) <---       <---------ARR11(3)            ------->TEIL                            *TSS         --------->LBD16       --------->AHL20(1)      <---------ARR14(2)                          -------->P    <---------LBD16       <---------AHL20(1)  <-------TEIL<---------LBD16                    --------->WOX13(1)<--------  ------------>CBF        --------->AtLEC2   ----------->GT1       --------->YAB1       <---------LBD16 -GLK1(2) <---------AHL20(2)   --------->ARR14(2)        --------->At4g35610--------->MYB46(3)-------   ctctctcaatattttcttgtcaaacaacatgcatatttgaacccgcatggtgaaatagcatcggcattaacatgatcaaccacaaaataaaccggggtgg  14312100 ---------HVH21                                 <---------MYB52(1) ----->bZIP60(1)                               <-----------HVH21 ----MYB46(3)                                  <-----------TGA1 -MYB46(1)                                    --------->ANAC46 -MYB83                                       --------->bZIP60(2) ---DEAR3(1)                                 ------>ZmHOX2a(1)                                      - -P                                 --------->ZAT2             <-------TEIL                         < --ABI4(1)                          <---------ZAT2 ----------->GT1        <---------AtLEC2          < ---AtMYB61                         <---------At4g35610   <---------TOE1(3)                         - ------bZIP60(1)        <----------ID1   --------->ARR14(2) <------ZmHOX2a(1)  ------->TEIL   ------- -ANAC46              --------->ZAT6--------->At4g35610   <---------TOE2(3)------->TEIL     --------- -->ALFIN1       --------->TOE2(3) <---------AGP1<-----------RAV1(2)   ------->TEIL  <---------ARR14(2)   tgtcatagcatcgacattaacttaaaactacaaaatagagctgggtcctcgtcaggttttaaggatacatatgtatgcatgtatgcatatacaaaataat  14312200                                                                                                    -                                                      --------->TOE2(3)                             -                                                      --------->TOE1(3)                             -                                                   <-----------GT1                                  <                                                <---------YAB1                                    ---                                              <---------ICU4                                      ---                                           <---------AHL20(1)                                     <--                                           <---------AHL20(2)                                     <--              --------------->AtSPL3       <--------ATHB1                                       -----         <---------ANAC58                  --------->YAB1                                    --------     ---------->DOF2                       <---------ICU4                                   --------- -------->ZAT14                            --------->AHL20(2)                               --------- ---------ZAT14                --------->ANAC46--------->AHL20(2)                       --------->ANAC58 ---------ZAT18              --------->ANAC46--------->ICU4                             --------->ANAC58 -------->ZAT18       <----------DOF2     <---------ATHB12                       --------->MYB46(3)<- -->YAB1 <---------ANAC58  <-----------GT1<---------ATHB51  ----------->GT1      <---------MYB111(2)< >AHL20(2)    --------------->AtSPL8      --------->ICU4   <------ZmHOX2a(1)--------->PCF5 ------->TEIL   agagcactaaagcttgttcgtactcttttttacacaacatgctaataatttttataccttaggagtgaaattttagtggtccaacaacttaagcacctaa  14312300       <---------ALFIN1  ------>ZmHOX2a(1) ----->ZmHOX2a(2) -------->HSFB2a(1) -------->HSFC1(2) ---------HSFB2a(1) ------>ARR14(2) ------>ARR11(3) -------ARR14(2) -------ARR11(3) ------>ARR10                              <---------MYB46(3) ->TOE1(2)                                 ----------->GT1 >ANAC58  <----------DOF2      <---------ARR11(3) >ANAC58  <---------DAG2       --------->ARR11(3)   <-----------GT1 -----ZmHOX2a(2)              <---------CCA1(2)  <----------DOF2 ---------HSFC1(2)        <----------DOF2 <---------ATHB12 ------>ZmHOX2a(1)      <----------DOF2   gatccttccccacttttgtttggggctcctttatatctcttccaatggttacttttacttcctcttcttctcttcttgttccatctttcatgtgagagag  14312400                                                         --------->HSFB2a(2)                                                         <---------HSFB2a(2)           >>>>>>>>>TBF1                             --------->ANAC58      --------->At4g35610              >>>>>>>>>TBF1                             --------->ANAC58      <---------At4g35610           >>>>>>>>>TBF1             --------->At4g35610                 <------ZmHOX2a(1)           <------ZmHOX2a(1)             <---------At4g35610---------->DOF2--------->ALFIN1        <------ZmHOX2a(1)   agagttgaattttgcagatgagtatgagaagaagcaaagcggaagggaagaggagcttacgagaactgagtgaggaagaggaagaagaagaagaaactga  14312500                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                  <--                                                      --------->CCA1(2)                         -----                                                     <----------ID1                           <------                 >>>>>>>>>TBF1                    --------->DAG2                 --------->ETT(2) ---         <----------DOF2                         ---------->DOF2             >>>>>>>GRF7      -------     --------->ARR11(3)                       ----------->GT1                --------->MYB59 <-------     --------->ARR14(2)                      --------->DAG2               <-----------HVH21--------->SPL7     <---------ARR14(2)                --------->At4g35610           <---------ANAC46      <---------At5g28300     <---------ARR11(3)    <----------DOF2 ---------->DOF2         <---------ZAT18      <---------REM1(1)   agatgaagatacttttgaagaagaagaggctttggagaagaagcagaaaggtaaagctacaagtagtagtggagtttgtcaggtcgagagttgtaccgcg  14312600  Previous    Next  AGI:  At2g33810.1    Description:  SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); transcription factor. Identical to Squamosa promoter-binding-like protein 3 (SPL3) [Arabidopsis Thaliana] (GB:P93015;GB:Q8LGE8;GB:Q9LF84); similar to SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4), DNA binding [Arabidopsis thaliana] (TAIR:AT1G53160.2); similar to SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G53160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66418.1); contains InterPro domain Squamosa promoter-binding protein (InterPro:IPR017238); contains InterPro domain Transcription factor, SBP-box; (In Range:  from: 14312077    to: 14313148    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g33815.1    Description:  other RNA Range:  from: 14312084    to: 14313129    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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