Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           --------->ANAC58                                                                    <----------DOF2                                                                 <---------ARR11(3)                                                                 <-----------ARR10                <--                                                                 --------->ARR11(3)            ------              <---------ANAC58                                   --------->AHL20(1)            ------              <---------ANAC58                                   <---------AHL20(1)            ------         <----------DOF2    --------->TOE1(3)                   --------->CCA1(1)           ---------     <----------DOF2       ----------->RAV1(2)       --------->WOX13(1)    --------->ANAC58 --------- <---------CCA1(2)    --------->AtMYB61      <----------DOF2    --------->RVE1(1)      --------->MYB46(3) ------->TOE2(3)   --------->ANAC46       <---------YAB1  <---------ANAC55(2)--------->YAB1 <--------   atcttatctttctttggcttcccaccaatacctgaactcttcttatgctttgagtccatcacataaatatctttcccaagcatactctcaccactatacg  14309100                                              <-----------HVH21                                             <---------TGA1a                                             --------->O2                                             <---------O2                               --------->HSFB2a(2)      =================================================bZIP_DOF                         <---------HSFB2a(2)      ---------->DOF2                        --------->TGA1a                           <---------LBD16  <-------TEIL                           <-----------HVH21                            <---------LBD16 -------TOE1(2)                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         ------>ZmHOX2a(1) --->ANAC58                    ------>ZmHOX2a(2) <---------DEAR3(2)              --------->ARR14(2) --->ANAC58                    ==============HOX2a_HOX2a                         <---------ARR14(2) --->ANAC46      ---------->DOF2      ------>ZmHOX2a(1)                          --------->GLK1(2) >ZAT14          ======================================bZIP_DOF             --------->CCA1(2) >ARR14(2)--------->ARR11(3)  <------ZmHOX2a(2)---------->ID1           <------ZmHOX2a(1) -ARR14(2)<---------ARR11(3)  ===============HOX2a_HOX2a          <---------LBD16------->TEIL   caggtccatagagctcttcaaaagcggtagcgatctcttcctctgtctcgtcgcttccttcgtcgaaatacggaggagagacgaatccttcgggagcaat  14309200                       <---------MYB52(1)                      --------->At5g28300                      <-------GAMYB           --------->ANAC58           --------->ANAC58           --------->ANAC46   <-----------RAV1(1)                               ----------->HVH21  <------MYB46(1)    ----------->GT1  <---------ANAC58                        <----------DOF2  <------MYB83      <---------RAP2.6(2)                              <---------MYB46(3) <---------MYB46(3) <---------ANAC46  <---------ANAC58               <---------ETT(2)         ------- --------->MYB55(2)<---------LBD16    <---------ANAC46         --------->ARR14(2)         <xxxxxxxxxx   tggtgggtcgaagacgacatttgcggttatttctggtgtttcgtcttcgaagaagatggtttcggtatcggtcgatgaggctttgacgagagtgagagat  14309300              <------ZmHOX2a(1)        <-------GAMYB       --------->MYB55(2)       <---------DEAR3(2)       <---------MYB46(3)                                                        <---------ANAC58      <---------ANAC46                                                           <---------ANAC58      <---------DEAR3(1)                                                         <---------ANAC46     <------NtERF2<------ZmHOX2a(1)                                            <---------ZAT14    <---------DEAR4(2)                                                        --------->ALFIN1    <---------RAP2.3(1)                                                     --------->ALFIN1    ------------>AtMYB77                                                <---------ANAC46   <---------RAP2.3(2)                                                <---------ARR14(2)   <---------DEAR3(1)                                   --------->At4g35610 <---------ANAC46  --------->At4g35610<------ZmHOX2a(1)                <------ZmHOX2a(1)<-------TEIL -->CCA1(2) <---------TOE2(3)--------->CCA1(2)  <------ZmHOX2a(1)     --------->ALFIN1    <---------ZAT14 xxxxxxxxxsmallRNA(se3) ---------->DOF2  <---------ANAC46             --------->ARR14(2)  --------->ZAT14   gagaagcggcggttgaggaaggaggagaaagagacgatggattttgtggaggaagaggagatgagagaagaggttcgggtgtggagtgagagtgaagaga  14309400                     <------NtERF2                    ------>NtERF2                                                              ------                   --------->ETT(2)                                                          --------                   <---------ETT(2)                                                          <-------          ----------->HVH21                                                         --------->ANAC46        <---------At4g35610                                                   <---------ANAC58 ------        <---------ZAT2                 <----------DOF2                        <---------ANAC58<------ZmHOX2a(2)        --------->At4g35610            <---------DAG2                      --------->DAG2    <------- <---------YAB1 <-----------RAV1(1)<------ZmHOX2a(1)<------ZmHOX2a(1)    ---------->DOF2----------->RAV1(1)   gtgatgagagagctgatgctgtcgccattgaaatggaggagcttttttggatgaggaaggaagtgagaatgaagcaaaaggcttatccagcaccagatcg  14309500                                                                              --------->YAB1                                                                             <---------YAB1                                                                      <---------AHL20(2)         ----------->GT1               --------->YAB1                <---------ARR11(3)       ---------->DOF2                 <---------ICU4                --------->AHL20(1)      *TSS        <-----------RAV1(1) --------->ICU4                 --------->AHL20(2)    ----------->GT1                --------->AHL20(2)                <---------AHL20(1) >ZmHOX2a(2)  <------------CBF   ----------->GT1                     <---------AHL20(2)           <-- ->ARR14(2) <---------YAB1  <-----------TBP                     ------------>CBF <-----------GT1  --- --ARR14(2)<---------ARR11(3)   <---------TOE2(3)              ----------->RAV1(1)               ---- ----->GT1--------->YAB1   <----------DOF2               <------------CBF <---------AHL20(2)     <--- --ARR11(3)--------->ARR11(3)  ---------->DOF2    <----------DOF2    --------->ARR11(3)   ------->TEIL   taaaaactgtaaagataattgtgttggggcttttaaagtaattatcaagtttctttacaaattggccacaatatattttataataacatttgaaccctca  14309600             --------------------->WRI1  ------>ZmHOX2a(1)  <----------DOF2                                                            ----------->GT1 -------ARR14(2)                                                 --------->ANAC58 ------>ARR14(2)                          <-----------RAV1(1)    --------->ANAC58 ----->GLK1(1)                          <----------DOF2        ---------->DOF2 ------CCA1(2)                    ------>ZmHOX2a(1) <---------ATHB12       ---------->DOF2      -----   tatccttttgtttgaatttgggctcttcgctcactcctccctctttgtggcccaatgaagtttcttcaagcccatacaaaagtaactagtagtaatccac  14309700                            <---------TOE2(3)                     <-------TEIL                   --------->ARR14(2)                   <---------ARR11(3)                   <---------ARR14(2)       --------->AHL20(2)                 --------->LBD16          <---------------AGL15                <---------ANAC58          --------------->AGL15                <---------ANAC58         --------->TOE1(3)          ------->MYC3           <---------                <---------ANAC46         --------->TOE2(3)   ----------->HVH21         <---------YAB1               <---------LBD16         <---------ARR11(3)<------ZmHOX2a(2)          <---------AHL20(1)            <---------ANAC58<---------TOE1(2)           --------->ARR11(3)          <---------AHL20(2) ---->ANAC46<---------ANAC58<---------TOE2(2)       ---------->DOF2 <-------MYC3    --------->AHL20(2)   atcaaaccctataggcttgcggatacatcttaggtttactaaatcttaaaatagaaaagatcagtgaccatatgctaattcaacattttatttttacata  14309800                                                                                    <---------WOX13(1)                                                                                <---------MYB52(1)                                                                                --------->DOF5.7(2)                                                                               --------->TOE2(3)                                                                              ----------->GT1                                                                         --------->ANAC46                                           <-----------GT1               --------->ANAC58                                           <---------YAB1                --------->ANAC58    <-------                                    <------ZmHOX2a(2)                   ------->GAMYB   <----------DOF2                                   --------->ARR11(3)                  --------->MYB46(3)  --------->YAB1                           <---------YAB1--------->YAB1               ------>MYB46(1)  <---------ANAC58                           <---------AHL20(2)                         ------>MYB83--------->MYB52(2)                  ------->TEIL   <---------YAB1                      --------->MYB52(1)<---------ANAC58         --------->AHL20(2)--------->AHL20(2)                       --------->AtMYB61  <---------ANAC46 --GT1--------->ICU4<----------DOF2<---------ARR11(3)         ----------->HVH21--------->TOE1(3)   ctttggtcatttttaatatggactttgttttaattaagatcgattatactaactacaatcgcatatgacaccaacgagcaacgttaattgcttttatgat  14309900                                                                                              <------                                                                                          <---------ANAC58                                                                                          <---------ANAC46                                                                                          <---------ANAC58                                                   <---------ZAT14                  <---------TOE2(3)                                                   <---------ZAT18                  <---------TOE1(3)                                                   --------->ZAT18                 --------->MYB52(1)                           ---------->DOF2<---------AHL20(2) --------->DAG2        <---------DOF5.7(2)                          <---------AHL20(2)       --------->ZAT14                 <-----------GT1  <XXXXXXXXXXXXXXXXXXXXMIR407--------->DAG2      <---------------AtSPL8          <---------MYB52(2)<- ---------->DOF2         --------->AHL20(2)      --------------->AtSPL8        --------->WOX13(1) <-- --YAB1                  <---------AHL20(2) ---------->DOF2 ---------->DOF2   <---------AHL20(2)-----   tttaaaagtatgtgatttgcaaactaattaaaaggtgaccatatataaaagagtgtactacaaaaagggcctactactattcaattaacgttgctcgtta  14310000  Previous    Next  AGI:  At2g33800.1    Description:  ribosomal protein S5 family protein. Identical to 30S ribosomal protein S5, chloroplast precursor (rps5) [Arabidopsis Thaliana] (GB:P93014); similar to unknown [Populus trichocarpa] (GB:ABK95748.1); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro domain Ribosomal protein S5, bacterial-type; (InterPro:IPR005712); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851); contains InterPro domain Double-stranded RNA-binding-like; (InterPro:IPR014720); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5, N Range:  from: 14307848    to: 14309506    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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