Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <------NtERF2                ------>NtERF2               --------->ANAC58               --------->ANAC46                                                    ------>ZmHOX2a(2)               --------->ANAC58                                                   <------ZmHOX2a(2)              <-------MYC3                                                       --------->ARR11(3)              ------->MYC3                                                       <---------ARR11(3)              ------->MYC2                                                  <-------TEIL            -              <-------MYC2                                               --------->LBD16            -             --------->ANAC46           ------>ZmHOX2a(1)            --------->ARR14(2)          ----             --------->ANAC58           <XXXXXXXXXXXXXXXXXXXXMIR854A-E<------ZmHOX2a(2)         <----             --------->ANAC58           =====================================HOX2a_HOX2a   --------->ANAC46           <---------ALFIN1   --------->TOE2(3)         <-----------GT1------>ZmHOX2a(2) <---------DOF5.7(2)          <---------REM1(2)   --------->TOE1(3)     <----------DOF2  <---------ARR14(2)--------->DOF5.7(2)   aactaatttctcaacacgcgccttctccctagccttaacctcctcttccctctccttttctctatttctccgatccggttcacgatctcgttcacgacgg  14274600 -------->ANAC58                                                                                ----- -------->ANAC58                                                                     <---------CCA1(2) ----->WRKY18(1)                                                         <---------CCA1(2)  <-------- -------HVH21                   --------->ARR14(2)              ------>ZmHOX2a(2)  ----------------->AGL1   tcacgctcacggtctctctctcgctctctatccctatccctgtctctatccctatcgcggtctcgatctcgccctctatctctctccctatctcggtcac  14274700                                                                                                  ---                                           <------MYB46(1)                                        ---                                ------>ZmHOX2a(1)                                                 ===                               --------->TOE2(3)                              =======================                             <------ZmHOX2a(2)                                ---------->CDC5     ---                            --------->ARR14(2)                                =======================                  ------>ZmHOX2a(2)        <------MYB83                     xxxxxxxxxxxxxxxx>smallRNA(i)                  =====================HOX2a_HOX2a                      <---------LBD16       <------                 <------ZmHOX2a(2)     --------->ATHB12             <-----------HVH21         <------                 ======================HOX2a_HOX2a --------->ATHB12<---------ANAC58 ------>NtERF2 <--                 --------->GLK1(1)    --------->LBD16              <---------ANAC58----------->HVH21 ---->ANAC55(2) --------->ARR14(2)    <---------YAB1         --------->ARR11(3)   ------>NtERF2   <-- ---HVH21       <---------ARR14(2) <-----------------AGL1    <---------ARR11(3)   --------->ATERF1(1)   gttctcggtctcggtcccgatctctatctcgatccttatcccgattggtatctccattggagacatcttccgtctcgggctcggggcgaccaagttgctc  14274800                                  <---------ANAC46                                 <------NtERF2                                <---------RAP2.3(1)                                ------>NtERF2                                <---------ERF1                                <---------ORA47(2)        <-------MYC3            <---------RRTF1(1)        ------->MYC3           <---------RAP2.3(3)       --------->O2            <---------RRTF1(3)       <---------O2            <---------RRTF1(2)       --------->TGA1a         <---------RAP2.6(2)       =========================================bZIP_DOF       <---------TGA1a         <---------RAP2.3(2)  ----------->HVH21            --------->ATERF1(2) ------>TGA1a                  <---------ATERF1(2) ------>ANAC46            ------>ZmHOX2a(2) ===============================================bZIP_DOF ================MYC_MYB  ----------->RAV1(2) ------>O2          --------->CCA1(2)                        <----------DOF2 =======MYC_MYB    <---------ARR14(2)<----------DOF2      <----------DOF2 ---ANAC58  <---------ANAC58   <---------DEAR3(1)       <---------At4g35610                       <-- ---ANAC58  <---------ANAC58   <---------ANAC46         --------->LBD16                          ==== -------O2  <---------ANAC46  <---------ABI4(1)        --------->ANAC46                          ==== -------TGA1a<---------LBD16------>ZmHOX2a(1)   --------->ZAT6          <------ZmHOX2a(1)        <---   acgacggacacgttgctcggagatttgatcctggcggcgttttagggctaactcttcccgctgttttttggtgaggaagacaggcttcttagcaatggag  14274900                         ----------->HVH21                         --------->TOE1(2)                        ------>ZmHOX2a(2)                        --------->DEAR3(2)                       <------ZmHOX2a(2)                      --------->ZAT2                       --------->CCA1(2)                      <---------ZAT2                      <---------ARR11(3)                      <---------At4g35610                      <---------ARR14(2)             <---------DEAR3(1) --------->KAN4(2)                      --------->ARR14(2)        <----------DOF2        <---------KAN4(1)                      <---------AGP1    <---------WOX13(1)    --------->At4g35610                    ----------->ARR10  <---------ANAC58   <-------GAMYB--------->KAN4(1)            <---------LBD16            <---------ANAC58  <---------MYB46(3)          ----------->HVH21           --------->ATHB12   --------->MYB55(2) -------ARR14(2)    <-------TEIL    <---------MYB52(1) <---------MYB52(1)                     ------- =============================HOX2a_HOX2a<---------MYB46(3)  --------->MYB52(2) <------MYB46(1)    -- ==============================HOX2a_HOX2a  <---------ZAT18<--------P <---------KAN4(2)   <---------- ---ZmHOX2a(1)     <--------P------>NtERF2--------->KAN4(2)<---------MYB52(1)   <------MYB83 <------ZmHOX2a(1)   gaatcgagagtattgacggaggtagatccgacgacttcgttgattgttcgcttcatcggtggttagctggagattattcgcttggtcgattagcaggagg  14275000                                                                                               <-----                   --------->HSFB2a(1)                                                        -------              --------->HSFB2a(2)                              --------->ARR14(2)             ------- --------->ANAC58  <---------HSFB2a(1)                         <---------GLK1(2)              ------- --------->ANAC58<<<<<<<ZML2                                   <---------ARR14(2)           --------- -->ALFIN1 <---------ARR11(3)                      <----------DOF2                   --------->HSFB2a(2) -------->DOF2<---------HSFB2a(2)               *TSS          <------------------------ANAC81-------- -RAV1(2)  --------->ARR11(3)                  --------->GLK1(1)     <----------DOF2 <---------HSFB2a(2)   ggaaagcaaacaagacctagaacctttcttctcttcttctctcgctctgatttctttttcacttggattctctttttctacatttttccaaaacccccca  14275100 ----ALFIN1 ---------->AGL2                                                                                 ---- -->LBD16                                                                                      <----- ----->CBF                                                                                     <----- >ANAC46                               <----------DOF2                                         ------ ->ANAC46                    <---------MYB52(1)                                      <---------ZAT6   attctagcaaactctcaagggttttaggcccattagtttttcttttgcattccgaattcaaatctaattttgtttttaggcccattagtgttttttcagc  14275200                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                                                                     <---------ANAC46                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                                  --------->ALFIN1                              <---------ANAC46                                    <---------AtMYB61                              <---------ANAC58                                   <---------ZAT14                              <---------ANAC58                                   --------->ZAT14  --------->GLK1(2)<---------ARR11(3)                                           <---------ANAC46 ----->LBD16       --------->ARR11(3)                                  <----------DOF2 ----LBD16   --------->MYB111(1)   --------->ICU4                     <---------ANAC46 ----At4g35610     <---------GLK1(2)                                  <---------ANAC58 --->At4g35610   ----------->ARR10 <---------YAB1                     <---------ANAC58 ----------->HVH21   ggagattatgtagagtagttagattttctcttgggtgaagattacaaacccatttcaagggttagagaactcgcttgtagtagtgtggtgtgacacagtt  14275300                        <---------ZAT14                                          <---------YAB1         <---------TOE2(3)                                              --------->MYB52(1)    <--------HAHB4      --------->ZAT14                              --------->ANAC46    <---------ICU4      --------->ZAT18                              --------->ANAC58    --------->ATHB12 ------>MYB83                                    --------->ANAC58   <---------YAB1    ------>MYB46(1)                     <---------HSFB2a(2)    --------->ARR11(3)   --------->ICU4>>>>>>>>>>MYB80           ----------->RAV1(1) --------->AtLEC2 <---------ARR11(3) --------->YAB1 <-----------GT1       <----------DOF2    --------->HSFB2a(2) <---------GLK1(2)   cattcatcattagggattaaaccaactacactaattctgtctttccaacatgaagttttctggtaatgcaaacgaaaccgattatcttcgacatcaatgt  14275400                                  <------ZmHOX2a(1)                                <---------TOE2(3)                          <--------P  --------->ANAC58      <---------At4g35610                        <---------MYB46(3)                  --------->At4g35610           <---------WOX13(1)                        --------->ATHB12               <---------HSFB2a(2)             <---------YAB1    --------->DAG2     <---------YAB1 <----------ID1   --------->HSFB2a(2)     <---------GLK1(2)   ---------->DOF2  <---------AHL20(2)--------->ANAC58<---------LBD16      ----------->RAV1(2)   tcagataaagttgaaaactgatataatggttgctaaggagacgacaaaatgttttttgtggaagcagagaaactaaaacctgattcgttctaattgatgc  14275500  Previous    Next  AGI:  At2g33730.1    Description:  DEAD box RNA helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 21 (RH21) [Arabidopsis Thaliana] (GB:P93008); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.2); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas reinhardtii] (GB:XP_001692956.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ69696.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74342.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains I Range:  from: 14272526    to: 14275048    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g33735.1    Description:  DNAJ heat shock N-terminal domain-containing protein. similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G16650.1); similar to DNAJ heat shock N-terminal domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19401.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609) Range:  from: 14275345    to: 14276517    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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