Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------MYB46(3)                                 <--------P                 <---------MYB52(1)        --------->AtLEC2               <---------ZAT6   <---------ANAC58                                                    -               <---------ANAC58 <-------GAMYB                                                      --   ----------->GT1              <---------ANAC58              <------MYB83                         <- --->ATHB12    <---------ANAC58 <---------ANAC46              <------MYB46(1)             ----------- -TEIL    <----------DOF2  <-----------RAV1(1)    <---------YAB1                         <---------WOX13(1)   tggggatgtaaactttagcgttaggcttaatgtgggttgtttttcatgcactatgttagtaatttggtttttgaaagtttctccttgtgtaattgacagc  14256300                           --------->ANAC46                           --------->ANAC55(2)                          <---------LBD16                          <---------At5g28300                         <-----------GT1                     <---------CCA1(1)                     <---------RVE1(1)                    --------->ARR11(3) --------->DOF2     <---------ARR11(3) ------->ICU4       --------->AHL20(1)             <-----------GT1      <-------TEIL --------ATHB12     <---------AHL20(1)         <----------DOF2      <---------------AtSPL3 >HVH21         ---------->DOF2               <---------DAG2        <---------------AtSPL8   <-------   aataaagaagaaacttgagaaagatatttacggagttggaagtattggccttttcactgatttagacagagaggtacagaaatacctatatgtctgcatg  14256400                                                                                             --------                                                                                       <------MYB83                                                                                       <------MYB46(1)                                                                                     <--------P                                                                                    <-------GAMYB                                                                                    <---------ANAC46                 <----------DOF2                                                <---------LBD16              --------->ARR11(3)                                                --------->TOE1(2)              <---------ARR11(3)                    --------->YAB1              --------->TOE2(2)  <---------TOE2(3)      <---------YAB1            --------->ICU4              ----------->RAV1(2) --AtLEC2<---------AHL20(2)                     --------->ICU4                <----------------------   ttttatggtatttgattatcttttagtatcatttagagtgattttaagtcaaaatgatcagagtttagcgattagacagaaacctgggttggaagaacac  14256500    >>>>>>>ZML2                                                       <---------DAG2    --------->HSFC1(1)--------->MYB46(3)                      <----------DOF2    --------->HSFB2a(2)                          <---------MYB52(1)   <----------DOF2    <---------HSFB2a(2)              <---------DAG2     --------->ARR11(3) ->ZAT14            --------->MYB52(1)     <----------DOF2------>ZmHOX2a(2)                      ---- -TaNAC69(2)  <---------HSFB2a(2)    <----------DOF2    <---------ARR11(3)                      <----   tctgttctagataaatcgagaacaacgactcagtgagtacttttcctttccattagatgatctactttgacacttttgctcttagatagtattcaactat  14256600                                            <---------ANAC58                                            <---------ANAC46                        <---------AHL20(2)  <---------ANAC58    ------------>CBF                   ------->TEIL         --------->At4g35610    --------->ANAC58            --------->AHL20(2)       <---------YAB1    <---------AtLEC2            <---------AHL20(2) ------>ZmHOX2a(1)      --------->ZAT14                       ------->TEIL         --------->YAB1<-----------GT1--------->YAB1  <---------ZAT14                   ------------- ----->AHL20(2) <---------YAB1<---------ANAC58     <---------ANAC46          ------------>CBF -----YAB1  --------->YAB1    <---------ANAC58 <---------ZAT14 --------->ANAC58     ------->TEIL   tatttagtgtctaataatatgaatatttcattccttactatcatcagcgtgttctgtgcagggacaaacaatgttctataccaatgcatccaagtacctt  14256700                                                                                ------->PIF5                          --------->bZIP60(2)                                   <-------PIF5                          --------->ANAC58                                     <---------ANAC58               --------->LBD16   --------->AHL20(2)                            <---------ANAC58              --------->ANAC58   <---------AHL20(2)        ---------->DOF2<---------ANAC58              --------->ANAC58  --------->AHL20(2)    <---------At5g28300 <---------ANAC58             <---------LBD16   <---------YAB1    <---------ICU4      --------->O2                 <--             ------->GAMYB--------->ANAC46      <---------ATHB12     <---------O2--------->ALFIN1<---  --------->YAB1          --------->ANAC58      <---------YAB1  --------->ARR14(2)               ---- -->AtSPL8 -------->P   <---------ALFIN1      --------->YAB1    <---------ARR14(2)<-------TEIL  <----   tcaaacagaactcaacccgcatacttccacgttattaaaaaaactgactcatcattcacagcaaaggaacctcgtggctggacgtgcagttcatggacag  14256800                                                                                                  ---                                                                                                <----                                                                                              -------                                                                                             --------                                                                                      --------->ANAC58  --------->YAB1                           ------>ZmHOX2a(1)                          --------->ANAC58 --------->At4g35610                      <---------ANAC58                            --------->ANAC46 ----ZmHOX2a(2)           --------->MYB46(3)               <---------------AGL15    <---------ALFIN1 ------ARR11(3)    ----------->RAV1(2)    <---------ANAC58----------------->AGL1   <---------ZAT18--- ----->ARR11(3)   ------->TEIL  --------->ANAC58        --------->AtLEC2      ---------->DOF2<------- -----At4g35610   -------->P    --------->ANAC58   <----------DOF2----------->GT1  --------->ZAT18---   atcatcagaacgggagcatcaacctgcatccaacatgccaatgtccttgtcaacttttatgcaaaatgtggaaaattggccaaagcccactccatcttta  14256900                                                                        --------->ZAT2                                                                        <---------At4g35610                                                                        <---------ZAT2                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)        --------->At4g35610                                                               --------->At5g28300         --------->ZAT2     --------->GLK1(2)                                         <------NtERF2               <---------ZAT2 ------>ANAC46                                                <---------DEAR3(2)          ------->TEIL -----DOF5.7(2)           ------>ZmHOX2a(1)                  <---------DEAR3(1)     <---------MYB52(1) -->DOF5.7(2)             <---------HSFB2a(2)             <---------DEAR3(1)   <---------ALFIN1   <-- ->TOE2(3)               <---------LBD16                 --------->SPL7 --------->At4g35610<---------At4g35610 ------>ANAC58          <---------ANAC46                <---------ARR14(2)    <---------ZAT14     <-- ---DOF2  <---------AtLEC2--------->HSFB2a(2)           --------->ARR14(2)    --------->ZAT14     <-- ------>ANAC58 --------->ARR11(3)                       --------->MYB52(1)   ------>ZmHOX2a(1)    <--   acgccataatctgcaaggatgttgtgtcctggaacagtctcatcactggctattctcagaacggcggtatctccagctcctacactgttatgcagctgtt  14257000                  --------->CCA1(2)                 --------->ARR11(3)          --------->ZAT18   <---------At4g35610   --------->At4g35610                      <---------ANAC46 -------ANAC58   <---------ARR11(3)         <---------ANAC58 -------ANAC58 --------->ANAC58             <---------ANAC58                                 <------NtERF2 -------ANAC46 --------->ANAC58            <---------ZAT2                     --------->ARR11(3)<---- -------ANAC55(2)--------->ARR14(2)        --------->ZAT2    <------NtERF2---------->DOF2    --------   tcgtgagatgagagcgcaagatatactgccaaatgcttatacccttgctgggatttttaaggccgagtcgagtcttcaaagttctacagttgggaggcag  14257100                                                                                   <------MYB83                                                               <---------------AtSPL3           ----------->GT1                                <---------ANAC46        <---------AtMYB61          <---------ZAT6                                <---------MYB46(3)      <---------ANAC58    --------->ANAC58                                    <------MYB46(1)         <---------ANAC58    --------->ANAC58                                    <------MYB83 <---------ZAT6<------MYB46(1)    --------->ANAC46                                    --------->MYB52(2)    ------>NtERF2  --------->ANAC58                                      --------->MYB55(2)   <---------ZAT18        -  --------->ANAC58                                     <---------AtMYB61     --------->ZAT18       -- -----ATERF1(1)               <---------LBD16          <---------DEAR3(1)--------->DAG2        ------ ->ATERF1(1)                 <---------ANAC46         <---------MYB52(1)---------->DOF2   <------ZmHOX2a(1)   gctcacgcgctagtggtcaaaatgtcaagttttggggatatatatgttgatacttcgttggtgggcatgtactgtaaagcgggcttggtcgaggatggac  14257200  Previous    Next  AGI:  At2g33680.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69119.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61992.1); similar to hypothetical protein OsI_001946 [Oryza sativa (indica cultivar-group)] (GB:EAY74099.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 14256684    to: 14258867    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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