Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          --------->ATERF1(2)                                                                       --------->DEAR3(2)                                                                      --------->MYB52(1)                                                                      -------->P     --------->ARR14(2)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                <------MYB83         <---------ARR14(2)                                                                <------MYB46(1)     <------ZmHOX2a(1)                                                              <--------P--------->MYB46(3)                 --------->LBD16                             <-------GAMYB    <---------MYB52(1)               <---------LBD16                              <---------ANAC46 <-------GAMYB        ---       <-------TEIL                                         <------MYB46(1) <---------MYB46(3)   <---      --------->CCA1(2)                <---------ZAT14      <------MYB83<---------ATERF1(2)      <---   --------->MYB59                     --------->ZAT14     --------->MYB59  --------->MYB55(2)   ----   aatgttagatacattgatgcggaagatagagtgaaggtgagttcagagaaattgcagaagttgggttggacttaccggccgttggaggaaacacttgtgg  14233400                          <---------ANAC58              <---------HSFB2a(2)             <---------LBD16            --------->MYB52(1)            -------->P    <---------ANAC58         <---------At4g35610   --------->ZAT14         --------->At4g35610   <---------ZAT14  <-------GAMYB    --------->ANAC58 ------>GLK1(2)    --------->ANAC58 ------ARR14(2)  ---------->DOF2                                                   <---------YAB1 ------GLK1(2)--------->HSFB2a(2)                    ----------->GT1     <-------TEIL       <-------- ----->ARR14(2)--------->LBD16 --------->ZAT18---------->DOF2  <---------ZAT6<---------TOE2(2)   attctgttgagagctaccggaaagctaagcttgtggactgaaaacttggaaagaagagcaaaatagtgttttagcttcatatgttatagttatagtgttc  14233500                                                                                                  <--                <---------ALFIN1                                                                  ---              --------->ANAC58                                                                   <---              <---------ALFIN1                                                                 <-----     <---------ZAT18                                                                          <------   --------->ZAT14                        --------->YAB1                                      -------   <---------ZAT18                     --------->YAB1            --------->GLK1(1)           <<<<<<<<   <---------ZAT14                    <---------ATHB51           <---------GLK1(1)     <----------DOF2   <---------At4g35610       --------->DOF5.7(2)   <---------ZAT18                  <-----------GT1 -ZAT6        --------->ANAC58        <---------ATHB12   <---------At5g28300        <---------AHL20(2)   cattctgcacacacacacacactctctcatcgtttactcaataataagagttgtgcattcaccatggatttctgagtttttgttattttctttttagata  14233600                                                <---------ARR11(3)                                      <---------AHL20(1)    <----------DOF2                   <---------AHL20(2) -------ICU4                          --------->AHL20(2) ------>YAB1                          --------->AHL20(1) ------YAB1                         <---------AHL20(1)                                              - ----GLK1(1)   ------>MYB46(1)     --------->YAB1                                            <------- ---ARR11(3)   ------>MYB83 <----------DOF2     --------->ARR11(3)                    --------->ARR11(3) -->ARR11(3)  --------->WOX13(1)--------->TOE2(3)                                     <---------ARR11(3) <RAP2.2  <-----------GT1<-----------GT1  <-----------GT1       <-----------RAV1(1)  --------->GLK1(1)   tcattacttttattaccaatctacaattttctttccataatattttacaatatctctctattgtatatgttgttccaatttctaccgaaatcttactttc  14233700                                                                <---------YAB1                                                               <------------CBF                                  --------->ANAC58            --------->YAB1                                  --------->ANAC55(2)         <---------ICU4                                  <---------ANAC55(2)         --------->ATHB12                       --------->TOE2(3)                      -------->ATHB1          --------->ANAC46        --------->ANAC58           <---------ATHB12          --------->ANAC58       --------->SPL7              <---------YAB1 ----------->GT1      <-----------------AGL1                 --------->ICU4 <------ZmHOX2a(1)  <---------CCA1(2)                      --------->WOX13(1) ---------->GT1  <----------DOF2 <-------TEIL          ----------->GT1                           <--- ---DOF2  --------->ANAC58   <---------------AtSPL3<---------AHL20(2)                            ----   aaaggataaaacacacaaacttttatctcaattggtacgtcttgtttctgtataaatttgttaatcattgtagaaaataacataacaaatgtggatttaa  14233800                                                                     <---------At4g35610                                                                 ----------->HVH21                                                               --------->At4g35610                                                               <---------At4g35610              <---------TOE2(3)           *TSS                 --------->ZAT2           <---------YAB1<---------At4g35610             --------->CCA1(2)           <---------AHL20(2)    --------->AHL20(2)     <---------ARR14(2)       ---------->DOF2          --------->TOE2(3)     --------->AHL20(2)      --------->ARR11(3)      <---------WRKY38(1)        --------->ICU4   --------->At4g35610   ---------->DOF2 <---------ZAT2   <---------WRKY45 ------At4g35610  <---------DAG2<---------AHL20(2)      --------->ARR11(1)      <---------WRKY12 ----->At4g35610  <----------DOF2<---------AHL20(2)   ----------->ARR10        --------->WRKY18(1) --   gctgaacataaatattaatgctttttccgatgaataaaattagtcgaacaaaagttgagatatggagctgaagcagagatggtcaaagtcaaacaaatag  14233900                                                        <---------ZAT18                                                        --------->ZAT18                                                        --------->ZAT14                                                        <---------ZAT14                   --------->HSFC1(2)                  <---------ANAC46                   <---------HSFC1(2)                <---------MYB46(3)                   --------->HSFB2a(1)              --------->ALFIN1                    <------NtERF2                   <---------HSFB2a(1)             <-------GAMYB                       --------->LBD16                  --------->ARR11(3)             <---------RAP2.6(2)                  <---------ANAC46                  <-----------ARR10              <---------DEAR3(1)                  <------NtERF2                  --------->GLK1(2)              <---------ANAC58                    --------->ATERF1(1)                  <---------ARR11(3)             <---------ANAC46                    <---------LBD16                  <---------ARR14(2)             <---------DREB2C(2)                ------>NtERF2                  --------->ARR14(2)           ------------>AtMYB77                --------->ALFIN1                 <---------GLK1(2)          <---------ICU4  ---------->DOF2  --------->ARR14(2)           --------->ANAC58       <---------ANAC58<---------MYB46(3)         <---------ARR14(2)           --------->ANAC58       <---------ANAC58--------->MYB55(2)        ----------->HVH21 ------>P  --------->ANAC46<---------------AGL15 <---------ANAC58  --------->DAG2  ----------->HVH21   ctaccatttgcacaaggaagaatcttcttctcatttgggtgatcaaaaatggcggttgtgcagaaaggaaaggtttgtgtaaccggtgccggaggttttt  14234000                                                     <-----------HVH21                                                --------->ZAT14                                                <---------ZAT14                                              --------->ANAC58                                              --------->bZIP60(2)                                              --------->O2                 --------->YAB1               --------->ANAC46                         <-----------GT1                 <---------ICU4               --------->ANAC58                     <----------DOF2                <---------ATHB12             <---------LBD16                      <---------DAG2              --------->WOX13(1)            <---------ALFIN1                   <---------ALFIN1   <---------ANAC58              ----------------------->TaNAC69(2)    --------->ZAT14<---------CCA1(2)   <---------ANAC58     ------>ZmHOX2a(1)  <---------WRKY12--------->GLK1(1)  ------>ZmHOX2a(1)   tgggttcttgggtcgtcaatcatctcctctctagggattacttcgtccacggcactgtcagagaccctggtactactctcctcaccttttatctctccct  14234100                                                                                           <---------TOE1(3)                                                                                           <---------TOE1(2)                                                                 --------->ICU4      <----------DOF2                                                            ----------->GT1   <---------ANAC46                           --------->GLK1(1)          ---------->CDC5         <---------ANAC58             <----------DOF2                       --------->At4g35610        <---------ANAC58            --------->TOE2(3)                      <---------At4g35610 <---------GLK1(2)   <---------TOE2(3)   ctgtaaattgtcaacctttattctctcgcatttctagttcatcgaatttttgtagctcagcctggtcaaaattgattctttcgtctactttctaaggttt  14234200                                   <---------ETT(2)                                   --------->ETT(2)                                                 -                           --------->HSFC1(2)                                             <---------ANAC46                   --------->At4g35610                                        <---------At4g35610  <-                   <---------At4g35610                  <----------DOF2       --------->At4g35610  <-           <----------DOF2 <---------HSFC1(2)          <---------DAG2        <---------YAB1 <--------   tctattcccaattctttttgtagctccgatgtttctgtctacagacagaagattaagccttttgagtttgtctattgttctgatgaagagtttcgcatgg  14234300  Previous    Next  AGI:  At2g33590.1    Description:  cinnamoyl-CoA reductase family. similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G33600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66289.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 14231344    to: 14233678    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g33600.1    Description:  cinnamoyl-CoA reductase family. similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G33590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66289.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 14233842    to: 14235787    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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