Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------ZAT18                                                       <---------ATHB12         --------->ZAT14                                                    ------>ZmHOX2a(1)         --------->ZAT18                                                ------->PIF5         <---------ZAT14                                                <-------PIF5  <---------REM1(2)                                                    --------->bZIP60(2)  --------->At4g35610                        --------->LBD16           --------->ANAC58  --------->ZAT14                            ------>ZmHOX2a(1)         --------->ANAC46  <---------At4g35610                       --------->TOE2(3)          --------->ANAC58  --------->ZAT18        ------->GAMYB  <---------bZIP60(1)        ------>ZmHOX2a(1)  <---------ZAT14   <------NtERF2       --------->bZIP60(1)    <---------ARR14(2) ----ZAT14      <---------MYB46(3)   ----------->HVH21         --------->ARR14(2)   <---------ATHB12 --->ZAT14   <-----------RAV1(1)   --------->O2       <-----------GT1<---------ALFIN1     -----------   tgtctgcacagttcactgtggctgcaacgggcagaccaagtgacatcctgaatttgttaccagacgttcctccacgtcctaatcaaatcaaacaacaaaa  14151400    ----------->RAV1(1)  --------->MYB46(3)                                                     <---------YAB1 --------->ANAC46                                                       --------->AHL20(1) --------->ANAC58                  <----------DOF2                      <---------ARR11(3)         <- --------->ANAC58                 <---------DAG2                        <---------AHL20(1)         -- >RAV1(1)                      <-----------GT1                     --------->AHL20(2)              --   cacaagcaccattagaacaatgctcaaaaacatttaccttttctgttttcaataacatcaagtctcaaattcaatatttttgatatcaaatgttgttaat  14151500                              <---------ANAC58     --------->HSFB2a(2)      <---------ANAC58     <---------HSFB2a(2)      <---------ANAC46 --------At4g35610    <------ZmHOX2a(2)                     <-------TEIL                <---------ZAT14 ------->At4g35610   <---------ARR11(3)             <------ZmHOX2a(2)          <---------ZAT14    --- ------->ZAT2        --------->ARR11(3)            <---------ARR11(3)          --------->ZAT14  <----   gagctgtctagatgaatacatcagatcatattacttggaattgaagaaatcgagatcaaaggttcaaactttcgagcattctatactgagagtagtagat  14151600             --------->AHL20(2)            <---------YAB1         --------->ICU4         <---------YAB1       --------->ATHB51       <---------ICU4       -------->ATHB1            <---------HSFC1(2)       --------->YAB1            <---------HSFB2a(1)                   ---------->DOF2       <--------HAHB4            --------->HSFC1(2)                  --------->ANAC58      --------->ICU4        --------->AtLEC2                         --------->ANAC58      <---------ATHB12 ------->GAMYB              <-----------GT1--------->ZAT2   <---------ANAC58      <---------ATHB51--------->MYB46(3)          <---------YAB1 --------->At4g35610          ------- ------>ATHB12      --------->MYB52(1)          --------->YAB1 --------->MYB46(3) <---------ANAC46 -----WOX13(1)<---------AHL20(2) --------->At4g35610         ----------->RAV1(1)  <---------ANAC58   tgatttcaattattattaaatctaacagccatggaagcttcaaaaacaaattatactaaattgcaacagctacgaaagaagaaggcttggaatcgaaaaa  14151700                                                              ===================================HOX2a_HOX2a                                   --------->STY1(1)    <---------At4g35610                              --------->ANAC58          <------NtERF2                              --------->ANAC58        <---------ANAC58                          -----                         --------->At4g35610          <---------ANAC46                         <-----                        <---------DEAR3(2)            <---------RAP2.6(2)                      <-----                        ------>NtERF2           --------->ATHB12    ----------->GT1       <------ZmHOX2a(1)                       <---------DEAR3(1)      <---------YAB1 ------>ZmHOX2a(2)          --------->ICU4                       <---------RAP2.3(2)<---------At4g35610 =========================HOX2a_HOX2a --->DOF2--------------------->WRI1<---------STY1(1)  <---------ANAC58          <------ZmHOX2a(1)*TSS   gacatacctcgcttcgacattttcgacggctcaagctctagggcttctgatgtttggcgtctgatcgaagtagaaaaatgaaggagaagaaaggattagg  14151800                                                      --------->YAB1                                                      <---------ICU4                <---------YAB1                                                     <---------ATHB12     <---------GLK1(2)     --------->TOE2(2)         --------->ATHB12      --------->ICU4      ------>MYB83 ------>GT1                    --------->YAB1    <---------AHL20(2)      ------>MYB46(1) ----TOE2(3)       <----------DOF2         ------->TEIL         ------------>CBF <---------YAB1 ----TOE1(3)---------->DOF2   <---------YAB1     --------->AHL20(2)    <---------MYB59    <----------DOF2   gtttaaacctatggaaaaggccttttaggcccatgatagcccatgaaccattttaatcatgaaatgaacaataccaaattcttcttattagtcttttttt  14151900                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                                                             <-----------GT1                                                           --------->AHL20(2)                                                           --------->YAB1                       -----                      --------->AHL20(2)                --------->YAB1                    ---------->DOF2         <---------ARR11(3)          --------->YAB1    <---------AHL20(2)               --------->ANAC58         --------->ARR11(3)   <----------DOF2          --------->AHL20(2)        <-----------GT1-----      <-----------GT1 <---------AHL20(2)             --------->TOE2(3)--------->LBD16   --------->ANAC58   tttttttgtaacatcttctcttatttatataactttgaaacatagtttacaaacacattaattatacaaatccccaaactgaataacaagacgaaagaag  14152000                        --------->DAG2              <---------GLK1(2)<---------ANAC58             <----------DOF2                     <---------ALFIN1    <---------ANAC58            <---------ANAC58               ------>MYB83--------->TOE2(3)   <-----------GT1     ---------->DOF2   <---------MYB59             <---------ANAC46 ---->At4g35610   --------------->AGL15 --------->MYB46(3)       <---------ANAC58 ------>GT1 <---------ANAC58<----------DOF2------>MYB46(1)       <---------ANAC58     <----------DOF2   ctaaattacacaatgcttttcttcaaaaagctttattcgctaaccaaacacacacattcttagtcttgtttgcgagaattggccctctctttggcaattt  14152100                                 <---------GLK1(2)                           ----------->HVH21                          <-----------HVH21                      -------->P<---------ZAT2<------ZmHOX2a(1)                  --------->ANAC46         --------->CCA1(2)                  --------->ANAC58   --------------->AGL15                                    <------                  --------->ANAC58   <----------DOF2                                    --------->AtLEC2                ---------->DOF2 <---------At4g35610           ------>ZmHOX2a(1)    <-----------GT1   gttcaaataaacttccatcaaagcaacctctcacagcttctttagataggaaaccatcttcgtccttagcaagaatatagagtagtatccattcaacttt  14152200                                               <------ZmHOX2a(1)          ----------->GT1                    --------->ANAC46       <---------MYB52(1)            ------->TEIL                   ------>MYB46(1)       <---------ANAC58           <---------ANAC58              ---                   ------>MYB83          <---------ANAC58           <---------ANAC58      --------->AHL20(2)                  ----------->RAV1(1) --------->GLK1(1)           <---------At5g28300     <---------AHL20(2)                 ------->GAMYB   <---------At4g35610  <---------ZAT6<---------ANAC46      <---------AHL20(1)  ---------->DOF2--------->AtMYB61   <---------ARR14(2)          <-----------GT1          --------->AHL20(1) ----DOF2       --------->MYB46(3)   --------->ARR14(2)       <---------ICU4             --------->AHL20(2)   gtttgaaagcctgccataaccaacacaacaaatttagcagatttcgttaggatttagtgttaacttattaccgtgtatgtaaaatcaactaataaatttc  14152300  Previous    Next  AGI:  At2g33370.1    Description:  60S ribosomal protein L23 (RPL23B). Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to EMB2171 (EMBRYO DEFECTIVE 2171), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04400.1); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G04480.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) Range:  from: 14150630    to: 14151797    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g33380.1    Description:  RD20 (RESPONSIVE TO DESSICATION 20); calcium ion binding. similar to ATS1 (ARABIDOPSIS THALIANA SEED GENE 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G26740.1); similar to RD20 [Brassica juncea] (GB:ABX10750.1); contains InterPro domain Caleosin related (InterPro:IPR007736) Range:  from: 14151907    to: 14153547    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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