Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    --------->LBD16 <---------HSFB2a(2) --------->HSFC1(1)                                                                                -- <---------HSFC1(1)                                                      <---------ARR14(2)        -- --------->HSFB2a(2)                                                     --------->ARR14(2)        -- --------------------WRI1                                                --------->GLK1(2)    <------ >ANAC58      --------->AHL20(2)                                     --------->YAB1      --------->MYB52(1) >ANAC58  ---------->DOF2                    <------NtERF2          <------ZmHOX2a(2)    ----------->RAV1(1)   cttccagaaatacaaagaaaatagaagatgctaaactctccaatggcagagaaatattcaattcaatccgatcaaaatccgattcaattcccaacagttt  14085500                           --------->YAB1                          <---------ATHB12                        --------->WOX13(1)                      ------>ZmHOX2a(2)                                                             -                     <------ZmHOX2a(2)                                                             <-                    --------->ARR14(2)                                                            <--                    <-----------ARR10                                                             <--     <----------DOF2<---------ARR14(2)                                                            --- ------->ANAC58    <------ZmHOX2a(1)                                      ---------->DOF2         --- ------->ANAC46 <---------HSFB2a(2)                                    --------->ANAC46--------->DAG2 ------->ANAC58 --------->HSFB2a(2)               --------->DAG2    --------->ARR14(2)---------->DOF2 ---GLK1(2)    <---------ANAC46                  ---------->DOF2 --------->YAB1  >>>>>>>>>MYB2    ---   ctcgcaactttccgatttcgaggatccaatcagaaacaaattcacagaaaataaagcagcattggaatcatatacacaaagaaaaccaaaaagtcgaata  14085600         --------------------->WRI1         <----------DOF2      ------>MYB46(1)      ------>MYB83    <---------MYB59  -------->P                                  ----------------------->TaNAC69(2)  ------->TEIL --------->ANAC58              --------->ATHB12                                    ---- ----->ZmHOX2a(2)                     <-------TEIL            --------->MYB52(1)                 ---- -----ZmHOX2a(2)                    --------->ARR14(2)     --------->ANAC58                    <----- -------ARR11(3)                    <---------ARR14(2)     --------->ANAC46              <------ZmHOX2a(2) -------AGP1   --------->ANAC46--------->ANAC58   <---------GLK1(2)                    <---------At4g35610 ------>ARR14(2)          <----------ID1     <---------MYB46(3)                        --------->At4g35610 ------>AGP1   --------->ANAC58--------->ANAC58<---------WOX13(1)------->GAMYB  <---------AHL20(2) ------>ARR11(3)          <----------ARF1   <---------YAB1 --------->ANAC58     --------->AHL20(2)   gatctacctagctttggaagcaacgttggagacaagccgatacatggtgattgattctctcacacaaccgagaagattgcaattaattcagatcagaccg  14085700                                                                     --------------->AGL15                                                                     <---------HSFB2a(2)                                                                     <---------------AGL15                                                                  --------->GLK1(2)                                                                 <---------ARR14(2)                                                                 <---------GLK1(2)                                                                 <---------ARR11(3)                                                                 --------->ARR14(2)                                                                <---------HSFC1(2)                                                                <---------HSFB2a(1)                                                         ------>ZmHOX2a(2)                                                        <------ZmHOX2a(2)                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                       --------->ARR11(3)       ----------->GT1                             <---------At4g35610                         ------       --------->At4g35610                      ---------->DOF2 --------->HSFB2a(1)           <------ ---------->DOF2                         =======================HOX2a_HOX2a                  <------- -->MYB46(1)                             ======================HOX2a_HOX2a             <---------TOE2(3) -->MYB83                                <------ZmHOX2a(1)      --------->HSFC1(2)     <---------TOE1(3) ----MYB59          <---------GLK1(2)   ----------->GT1<---------ARR11(3)--------->ANAC46  <---------   aactaaagaagctaaattgacaaattctctcactcgtagatgaggagaaatgaagcagatcgtcgaagattctataagcagtagggtttagggttttacg  14085800                     <------MYB83                  <---------ANAC58               ------>ZmHOX2a(2)                  <---------ANAC58               <---------LBD16             <---------AHL20(2)                  <---------ANAC46              --------->ARR14(1)           --------->AHL20(2)                 --------->ATHB12               <------ZmHOX2a(2)           --------->YAB1             <---------ICU4                    --------->ARR14(2)    <---------MYB52(1)             --------->ATHB12            --------->ARR14(2)         --------->LBD16 --->ANAC55(2)<------------CBF           <---------ARR14(2)        --------->ANAC46 ---TOE2(3) --------->ICU4             --------->LBD16             --------------->AtSPL8    -------- ----GT1*TSS<---------YAB1     <-----------GT1 <---------ARR14(2) <---------LBD16         <---------- -DOF2 <---------ZAT2<------MYB46(1) <---------LBD16          ----------->HVH21          <----------DOF2   ttttctccaagctcatcattgcttggtcgagttttagcctccggttttggatccggttcgagttttgacccggtactattttaatatgggccttttaaag  14085900                   --------->AHL20(2)          <-----------GT1       <--------HAHB4                                                               --------->ARR14(2)       <---------ICU4                            <-----------GT1                    <---------ARR14(2)       --------->ATHB51                      <---------GLK1(2)                      --------->GLK1(2)      <---------YAB1        --------->DAG2   --------->ARR11(3)            <----------DOF2  <<<<<<<ZML2 -->DOF2 <---------YAB1     *TSS         ---------->DOF2              <---------WOX13(1) --------->HSFB2a(2) -TBP --------->ICU4       ---------->DOF2   <---------ARR11(3)    <---------YAB1  <---------GLK1(2)   cccagttcattattacaacattttaaaaaaaaagtcaccaaaaaaaagatttttcatttcatttcatttctgattgtctttctcagaatccctagaacac  14086000                                                                                                 ----                                                                                                 <---                                                        <------NtERF2                            ----                                                        <---------------------WRI1               <---                                                      <---------DEAR3(1)                        -----                   ============================HOX2a_HOX2a                                      <----                   <------ZmHOX2a(2)                 --------->ATERF1(1)--------->ANAC58      xxxxxxx                  --------->ARR11(3)             --------->MYB52(1)     --------->ANAC58     <-------              ---------->DOF2                   ----------->TGA1 --------->ANAC58            <-------       <---------TOE2(3)         --------->WOX13(1)<---------ANAC46<------ZmHOX2a(1)    <---------ZAT6      --------->MYB52(1)       ================HOX2a_HOX2a   --------->YAB1         <---------ANAC46      <-----------GT1          <------ZmHOX2a(2)----------->HVH21<---------TOE2(3)  <---------ANAC58    <---------WOX13(1)    <---------LBD16     --------->At4g35610--------->ANAC58   <---------ANAC58 --------->ICU4   <---------ARR11(3)    <------ZmHOX2a(1)   <---------YAB1    <------ZmHOX2a(1)<-----   acactgattaacgaatcaaagatcgatttggggatcaatcgaggaagaagatgacggaggcgatgataaggaagaagccaggaatggcgagtgtgaagga  14086100                                                                       --------->ANAC58                                                                       --------->ANAC55(2)                                                                       <---------ANAC55(2)                                                                       --------->ANAC46                                                                       --------->ANAC58                                                                      <---------LBD16                                                               ------>ZmHOX2a(2)                                                              <---------GLK1(1)                                                              --------->GLK1(1)                                                              <------ZmHOX2a(2)       <---------ANAC58                         <---------ARR14(2)   <---------ALFIN1       <---------ANAC58                         <---------MYB52(1)  <---------REM1(2)    <---------MYB52(1)                          --------->ARR14(2) ----------->RAV1(1)   <-------GAMYB                           <---------ARR14(2)<---------ARR14(3)  <---------ANAC58                         --------->ARR14(2)--------->ARR14(2)  <---------ANAC58                         <-----------HVH21 <---------ARR11(3) ----->CCA1(2)           ----------->RAV1(2) --------->SPL7  <---------AGP1 ------GLK1(1)         --------->DEAR3(1) <---------DEAR3(2) --------->ARR14(3) ----->GLK1(1)         --------->AtMYB61 --------->DEAR3(1)  <---------ARR11(1) -------TaMYB80        <---------ALFIN1 --------->ATERF1(1)  <---------ARR14(2) ---->ARR14(2)        --------->MYB46(3)<------NtERF2        --------->ARR11(3) -----ARR14(2)  <------MYB83           ------>NtERF2        <---------CCA1(2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ANAC46      <---------ARR14(1)                    --- --TOE1(3)      <------MYB46(1)  --------->ARR14(2)        --------->LBD16     ------>MYB83      <--- --TOE2(3)<-----------RAV1(2)    <---------ARR14(2)       <---------TOE1(2)    ------>MYB46(1)   <--- -ZmHOX2a(1) <------ZmHOX2a(1)   <---------GLK1(2)       <---------LBD16 ----------->HVH21    <------   tatgccgttgcttcaggatggtccaccacctggtggattcgcgccggtccgatatgctcgccggatctccaacacgggacctagcgccatggctattttc  14086200                   <---------ANAC46                   <---------ANAC58              <----------DOF2                                ----------->GT1            --------->ABI4(2)                                --------->ANAC58          <---------MYB52(1)                                 --------->ANAC58       <---------LBD16                                      <---------TOE2(2)     --------->ARR14(2)                                    <-----------RAV1(2)     <---------ARR14(2)                                   --------->LBD16    <---------MYB52(1)                                  <---------LBD16 ----------------->AG                   <-----------HVH21--------->ANAC46                          -- ----------------->AGL1                <------MYB46(1)<---------ARR14(2)                         <--- --->ZmHOX2a(1)    <---------ANAC58    <------MYB83   --------->GLK1(2)                        <----- ------ANAC58<---------ANAC58        <--------P       --------->ARR14(2)                       <----- ------ANAC58<---------ANAC58  ------->TEIL     =======================RAV                     <----- -----GT1--------->LBD16  <---------ANAC46      ----------->RAV1(1)                           -------   cttaccgtttccggtgcttttgcttggggcatgtaccaagttggtcagggcaacaaaatccgcaggtaattagataatgagatgtggaatttgagtttgg  14086300                                                                                     --------->MYB52(2)                                                                                 <---------MYB46(3)                                                                                 ----------->GT1                                                                              <---------ANAC58        <---------------AGL15                                                 <---------ANAC46   <----------DOF2                                                      <---------AHL20(2) ------->MYB59                                                         <---------AHL20(2) ------MYB52(1)                                                        --------->AHL20(2)<---------HSFB2a(2) -MYB46(1)                                                        <---------ANAC46 <---------MYB52(1) -MYB83 --------------->AGL15                                     <---------ANAC58 <--------P ----MYB46(3)                              --------->YAB1         <---------ANAC58<-------GAMYB  <--- -->MYB59    ----------->GT1             ------->TEIL       <---------WOX13(1)<---------ANAC58   ----   ttaggcttttctctattgtgaaattttgagtaatttgggattgaatcttaagacaatttgggattgatgcttataaatttgtgtggttagtctcgaaatt  14086400  Previous    Next  AGI:  At2g33210.1    Description:  chaperonin, putative. Identical to Chaperonin CPN60-like 1, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q8L7B5;GB:O49314); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13860.1); similar to HSP60 (Heat shock protein 60), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G23990.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE86688.1); similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2) (GB:Q05046); similar to Chaperonin CPN60, mitochondrial precursor (GB:P35480); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains Inter Range:  from: 14081984    to: 14085808    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g33220.1    Description:  similar to MEE4 (maternal effect embryo arrest 4) [Arabidopsis thaliana] (TAIR:AT1G04630.1); similar to unknown [Populus trichocarpa] (GB:ABK95941.1); contains InterPro domain GRIM-19 (InterPro:IPR009346) Range:  from: 14085928    to: 14087234    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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