Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->YAB1            --------->YAB1                                                       <-----------GT1           <---------AHL20(2)                                                <---------AHL20(2)          --------->AHL20(2)                                                 --------->AHL20(2)     <     <----------DOF2                                                        <---------AHL20(2)      -  --------->ARR11(3)                                                        --------->AHL20(1)  -----  <-----------GT1                    ---------->DOF2                        <---------AHL20(1)  <----  <---------ARR11(3)      <-------MYC3                      <---------YAB1  --------->AHL20(2) ------ ---------AHL20(2)        ------->MYC3            <---------ANAC58       <---------AHL20(2)    <----- ---DOF2  <---------AHL20(2)      ----------->GT1 <---------ANAC58 ----------->GT1             ------   atattatctttttttaataacaaatacacatgtaaactgtaaagtatacatttcttatctatatgaatgaagtataaatttatttaacacatacaaattt  14060100                       --------->ARR14(2)                       <---------ARR14(2)                    --------->ALFIN1                   ------->MYC4                   <-------MYC3                   <-------PIF5                   ------->MYC2                   <-------MYC2                   <-------MYC4                   ------->MYC3    --------->YAB1--------->TGA1a   <---------ATHB12------->PIF5 ---------AHL20(2)<---------TGA1a -------->AHL20(2)<---------ANAC46 ---->AHL20(2)    <---------O2 -----AHL20(2)    <---------PIF3(3)                                                            <----- --->AHL20(1)     --------->O2 ----------->GT1                                        --------->AHL20(2) ----AHL20(2)     --------->PIF3(3)                       ----------->GT1             <-----------TBP --->AHL20(2)  ---------------->PIF3(2)      ----------->HVH21                        <---------AHL20(2)   aataaatcataaaaaataccacgtggaactgtaatgtataatgtaatgtgacacaatatacagtcaaaacattccaacttatacagatttatatagattc  14060200                                                      <---------AHL20(2)                                                     <---------AHL20(2)      --------->AtLEC2                               <---------AHL20(1)    <---------GLK1(1)                                --------->AHL20(1)    --------->GLK1(1)                             <---------ICU4                 --------->YAB1    --------->CCA1(2)                     <---------AHL20(2)                --------->AHL20(2)   --------->ARR14(2)                     --------->AHL20(2)        <---------------AtSPL8   <---------ARR14(2)               ------>ZmHOX2a(1)--------->AHL20(2) <-------TEIL   ---------->TaMYB80  ---------->DOF2--------->REM1(1) <---------YAB1  ------->TEIL --TEIL    ---------->DOF2      ------->TEIL   --------->YAB1       --------------->AtSPL8        ---   aagcggatatgcaaaaagaagtagaaaaagaatgaatcctacatttatttcataatttattagtagtatatatgtacataaaatcatcttattccatctt  14060300                 <---------YAB1                 <---------AHL20(2)                <---------AHL20(1)                               <---------------AGL15          --------->YAB1                                        ----------------->AGL1       ------>ZmHOX2a(1)                                        ----------------->AG       <----------DOF2                                       <---------ARR14(2)     ------>ZmHOX2a(2)                                    <---------ANAC46     ==========================HOX2a_HOX2a                <---------ANAC58    ===========================HOX2a_HOX2a           <---------ICU4    <------ZmHOX2a(2)                                --------->ATHB12              <-------TEIL   <---------ARR11(3)             ===============================================MADS_MADS   --------->ARR11(3)             ----------------->AG<------------CBF        <---------AHL20(2)   --------->ARR14(2)             ----------------->AGL1  <---------ANAC58    --------->AHL20(2)   <---------ARR14(2)   ------>ZmHOX2a(1)           --------->ICU4     ----------->GT1  <------ZmHOX2a(1)    --------->TOE2(3)            <---------YAB1  --------->ARR14(2) ------->DOF2--------->YAB1     <-----------GT1   ---------->DOF2--------------->AGL15        <------   aaaaggatcctttcataatattattcctaagtattttccatatgggtgatagtaaagattgcgtttcccatatttgttaaataaatacatatattcttat  14060400                                                             ------>MYB46(1)                                                             ------>MYB83                                                           <---------MYB46(2)         --------->AHL20(2)                       ------------>MYB.PH3(1)                     <------         ----------->TBP                         ---------->DOF2                   <------NtERF2<----    --------->ZAT6                 <-----------GT1--------->DAG2                 <---------ANAC58  <-----------GT1            <---------DAG2  ------->GAMYB <---------MYB59       <---------ANAC46 ---CCA1(2)                  <----------DOF2--------->MYB46(3)   ---------->DOF2 <---------ANAC58   cttgtaactctataaataagaagcctaaacgctttattttccttcaaccaaaaaagggttaccaaaccaaagaagagagaatggcgtctagggttcttct  14060500                                                              =======================MYC_MYB                                                              ------->GAMYB                                                             --------->MYB46(3)                                                            ------>MYB46(1)                                                            =========================MYC_MYB                                                            ------>MYB83                                                            -------->P                                                            --------->ANAC58                                                        ------>NtERF2                                                  <---------ARR11(3)                                                  <---------ARR14(2)         --------->TGA2(2)                                                  --------->KAN4(2)         <-----------TGA1                                                  --------->ARR11(3)       <---------bZIP60(1)                                                  --------->ARR14(2)       --------->bZIP60(1)                                                 <----------TaMYB80        ==========================                                                 --------->GLK1(1)         <---------O2                                                 <---------GLK1(1)         <---------TGA2(1)                                                 <---------KAN4(1)         --------->ANAC46                                                 --------->KAN4(1) --------->ARR11(3)                                         --------->ANAC46   --------->ANAC58<-----------HVH21      <---------ANAC58              <----------DOF2    --------->ANAC46    --------->O2      <---------ANAC58            ------>NtERF2  <---------HSFB2a(1)       --------->TGA1a      --------->ALFIN1            <---------ATERF1(1)  ------>NtERF2       --------->TGA2(1)     --------------->AtSPL8       --------->At4g35610  --------->LBD16     <---------TGA1a    <---------ANAC58              <---------At4g35610 --------->LBD16   ----------->HVH21    <---------ANAC58             --------->DEAR3(1)  <---------LBD16  ===============bZIP_DOF    ----    <---------ANAC46          <---------DEAR3(1) --------->HSFB2a(1)  <----------DOF2       <--------  <---------ANAC46            --------->ANAC46  ---------->TaMYB80 --------->GLK1(2)        <-------- ---At4g35610                ------>ZmHOX2a(1)  <---------KAN4(2)  <---------ARR11(3)  <-----------RAV1(1) -----YAB1             <<<<<<<<<TBF1=================================================bZIP_DOF  <-----   gattttgtgtgtgccttctctcttcttcttcctcgccgcttccacgaaggaatatcccggccaaccaaaaatctttgacgtcagaaactatggtgctcgc  14060600                                                                             ------->GAMYB                                                                          --------->MYB52(1)                                                                         <---------WRKY12         ---                                                 <---------ANAC58--------->ANAC58                <---                                                 <---------ANAC58--------->ANAC58                ----                                                --------->ZAT2   <---------ANAC55(2)             ----                                                --------->HSFC1(2)      <------ZmHOX2a(2)        <---       ---------->DOF2                 <------NtERF2             <---------HSFB2a(2)             <---  --------->GLK1(1)                    --------->ALFIN1          --------->HSFB2a(2)            <---- <---------ARR14(2)      <---------ANAC46       <---------HSFC1(2)     <---------ARR11(3)       ----- --------->ARR14(2)      <---------ANAC58       --------->HSFB2a(1)    --------->ARR11(3)    -------- =================bZIP_DOF      ---------->DOF2 <---------ZAT2   --------->ANAC55(2)        --------- ----->LBD16             <---------ANAC58      ------->TEIL      <---------ANAC46           <-------- -ANAC58            <----------DOF2  <---------ANAC46           <---------LBD16             --------- -ANAC58       --------->MYB52(1)    <---------ANAC58          --------->MYB52(1)          <---------LBD16 ----LBD16     <---------DOF5.7(2)   <---------ANAC58         <---------ARR14(2)     <-----------GT1   gcagatagccaaagagataacgcttttgcgtttacaaaggcgtggaacgaagcttgccaatggagttacggaagatcaacggtctatattccttccggaa  14060700             --------->ANAC58          <---------MYB52(1)         <-----------HVH21 ------>KAN4(2) -------TaMYB80 ----->HSFB2a(1)                                                                           --------->ANAC46 ----->KAN4(1)                                                                             --------->ANAC58 ------HSFB2a(1)                                                                           --------->ANAC58 ------KAN4(1)                                                       --------->ATHB12     --------->SPL7 -----KAN4(2)--------->ANAC58                                      <---------DAG2       ------>ZmHOX2a(1) ----->TaMYB80  <-----------GT1------>ZmHOX2a(1)                   <----------DOF2    <---------ICU4 ->LBD16--------->ANAC46      <---------ANAC58              --------->At4g35610 --------->TOE1(1)   - >HSFB2a(2)  ----------->GT1  <---------ANAC58   <---------DAG2<------ZmHOX2a(1)--------->ANAC46  --- -HSFB2a(2)  --------->ANAC55(2)    ---------->DOF2      <---------YAB1        ------>ZmHOX2a(1) ---- >ANAC55(2)  <---------ANAC55(2)--------->AtLEC2 <----------DOF2<---------ARR14(2)   --------->ICU4--   tattctatctccgtcaagtaacattctctggtccttgcaaaagctctataactttttttatcagaggaactttattggctcctcgtaatccttacgccat  14060800                                                                            <------ZmHOX2a(2)                                                             <---------ANAC58                                                             <---------ANAC58------>ZmHOX2a(2)                                                             --------->ANAC55(2)                                                     --------->At5g28300   <-----------ARR10        -                                                     <-------GAMYB         <---------ARR14(2)    ----                                                     <------NtERF2         --------->ARR11(3)    ----                                                   <---------DREB2C(2)     <---------ARR11(3)    <---                                                   <---------DEAR3(1) <---------WRKY12           <---                                                   <---------ANAC46  --------->WRKY18(1)         ----     --------->YAB1                             <-----------RAV1(1) <-----------HVH21            <--- ------->GAMYB                                 <---------ANAC58 --------->MYB52(1)              <---- -------->MYB46(3)           <---------------------WRI1<---------MYB46(3)  --------->ARR14(2)   <---- ------>WOX13(1)      <---------------AtSPL8   <---------ANAC58----------->HVH21                ----- ----->MYB46(3)  <----------DOF2   --------->GLK1(2)<---------MYB46(3)<---------WRKY38(1)    -------- ------>P  ----------->GT1<-------TEIL     <-----------HVH21 <---------ANAC55(2) <---------YAB1 <----   caaccaagaagaatggatacttttcaagtacgtcgataatctcactgttactggcggtggattacttgacggtcaaggatcttattcttggcctctcaat  14060900 ---------->GT1 ---->ATHB1                   <---------STY1(2) ----->ATHB12           --------->ZAT14 ---------ATHB5         <---------ZAT18 -----ATHB1             --------->ZAT18                                               --------->WOX13(1) ----->YAB1             --------->SPL7                                     ------->GAMYB ------ICU4             <---------ZAT14           <----------DOF2       --------->MYB52(1) -----ATHB12          <---------SPL7             <---------ANAC58      <---------WRKY12 -----ATHB51         <---------ANAC46      <---------ANAC58           <------ZmHOX2a(2) ---->ICU4           <---------ANAC58------->TEIL<---------ANAC58    <---------ARR11(3) ---->ATHB5          <---------ANAC58<---------YAB1  ----------->GT1 --------->ARR11(3) -----YAB1 --------->ZAT6--------->ZAT6    <---------ANAC58 <---------ATHB12         <-------TEIL   -   gattgtaacaaaaacactaattgtcgtacactagctatgaacattgggtttgcttttgttaaatcatcgaagatcaacggtctaaggtccatcaatagca  14061000  Previous    Next  AGI:  At2g33160.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G78400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41851.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fol Range:  from: 14060481    to: 14063323    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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