Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ----------->GT1                                                          <---------------AGL15         ----------->GT1                                  --------------->AGL15        <---------TOE2(3)      <-------TEIL        --------->GLK1(2)                <-----------HVH21  <---------YAB1 <---------AHL20(2)               <---------GLK1(2)                 --------->LBD16 <-----------TBP<---------AHL20(1)                --------->ARR14(2)       <---------ICU4 ----------DOF2 <---------AHL20(2)                <---------ARR14(2)    --------->YAB1     <-------TEIL ------ALFIN1   --------->AHL20(2)          <-----------GT1    ---------->DOF2<-----------GT1       -   cacttttatagaggttaattttttttgtagaggttcatcgaatatttgaccagattcttactcgaaaaagaaaatcaaaattactccgtcaaattcatgg  14054100                                                                                           <---------WRKY12                                                         <---------ARR14(2)               --------->WRKY18(1)                                                         --------->ARR14(2)               -----------                                                    <---------ANAC46                     <--------ZAP1                                               --------->ATHB12                         <------MYB83                                              <---------ATHB12                    ---------->DOF2   -                                          <---------AHL20(2)                 <---------ZAT6<---------WRKY38(1)                <---------ZAT18    ------>MYB83-------->HAHB4            <---------ZAT14<------MYB46(1)         <---------ARR14(2)        ------>MYB46(1) --------->ATHB12      --------->ZAT14<---------DEAR3(2)      --------->ICU4   ---------->DOF2    --------->AHL20(2)        --------------->AGL15<-----------HVH21 -------->YAB1  ------>NtERF2  ------->TEIL<---------AHL20(2)       =================================   aataagaaatgaatacggtgcccaaaaaagatgaacctacacaaataaatgattcagtggatttgttttgctctgtatagtgatcaaagtcggtcaattc  14054200                                    --------->ARR14(2)             ---------->DOF2     <---------------AGL15            <---------WRKY38(1)  --------------->AGL15            <---------WRKY45    <-----------------AGL2            <---------WRKY12    ----------------->AGL2           <<<<<<<<<<WRKY40     ----------------->AGL1           <<<<<<<<<<WRKY18     ----------------->AG           --------->WRKY18(1)  <-----------------AGL3           <<<<<<<<<<WRKY62  <---------GLK1(1)          <-----------HVH21  --------->GLK1(1)       <---------WOX13(1)  <---------ICU4     --------->ATHB12      --------->ATHB12    <---------AHL20(1)    --------->ICU4    <---------AHL20(2)    <---------YAB1    --------->AHL20(1)  --------->YAB1    --------->AHL20(2)  <---------ICU4 <--------HAHB4        --------->ICU4                              --------->ANAC46                 < <---------ICU4        <---------ATHB12 --------->YAB1<---------ANAC58                           ---- ->CBF<------------CBF <---------ATHB51<---------YAB1 <---------ANAC46                       -------- -------->ICU4    --------->TOE2(3) <---------ARR14(2)<---------ANAC58--------->MYB52(1)     <------- ================================================MADS_MADS       --------->ZAT6   <-------TEIL  <----   gcataattaattggtcaaagcctcaataatgatttccatatatgataacattgatggctcgtttttaacacaaaactgaggggatgcattggaacatgat  14054300                                             --------->ARR11(3)                                             --------->ARR14(2)                                             <---------ARR11(3)                          --------->AHL20(2)                            <---------LBD16--------->ANAC58                        --------->TOE2(3) -----------GT1      <-----------GT1       ----------->ARR10                      ----------->GT1 ----->YAB1      <---------MYB52(1)        --------->ANAC58----------->GT1   <---------------AtSPL8 ->ICU4         <---------RAP2.6(3) ---------->DOF2      ---------->DOF2 --------->HSFB2a(2) --YAB1         <-------GAMYB  <---------MYB52(1)     <----------ID1     <---------HSFB2a(2)        - -----YAB1     ----------->GT1--------->LBD16<---------ARR14(2)   --------->AHL20(2)     <---------AHL20(2)   tataacgtcttatactgccgttataacgtctccggtatcaaagacaagatactataacgaaaagaaaaaaaaatactagaaggaacgttatataaatagc  14054400                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                              -------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                            ------>NtERF2                                                                                            <--------                                                                                         <---------ATERF1(1)                                                                                         <---------RAP2.3(1)                                                                                         ------>NtERF2                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        --------->ANAC46                                                                                        <xxxxxxxxxxxx                                                                                      ------->GAMYB                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    ----------->RAV1(2)                         <xxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxx                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                    <xxxxxxxxxxxxxxxx                    <xxxxxxxxxxxxxxxsmallRNA(le3)                                   <xxxxxxxxxxxxxxxx                    <xxxxxxxxxxxxxxxsmallRNA(si3)                                   --------->ZAT2                    --------->ALFIN1                                                <xxxxxxxxxxxxxxxx                   <xxxxxxxxxxxxxxxsmallRNA(si3)                                    <---------ZAT2                   <xxxxxxxxxxxxxxxxsmallRNA(le3)                                   --------->At4g35610                   <xxxxxxxxxxxxxxxsmallRNA(le3)  <------ZmHOX2a(2)                 <---------At4g35610                  <---------ANAC46               <---------ARR11(3)             <xxxxxxxxxxxxxxxxxxxx                  <---------ANAC58              <------ZmHOX2a(1)              --------->ANAC58 -----            --------->ICU4                   <-----------RAV1(2)               --------->ANAC58------            <---------ATHB51               --------->AtMYB61               --------->ANAC58--------->DEAR3(1)         --------->AHL20(2)            <---------ETT(2)                    --------->ANAC58--------->RAP2.3(3)         <---------AHL20(2)           <xxxxxxxxxxxxxxxsmallRNA(le3)        --------->ANAC46<---------ALFIN1        --------->AHL20(1)            <xxxxxxxxxxxxxxxsmallRNA(si3)     ------>MYB46(1)--------->ZAT18        <---------AHL20(1)           <xxxxxxxxxxxxxxxxsmallRNA(se3)     ------>MYB83<xxxxxxxxxxxxxxxx        <---------AHL20(2)           <xxxxxxxxxxxxxxxxsmallRNA(le3)     -------->P --------->MYB52(1)        --------->AHL20(2)   <xxxxxxxxxxxxxxxsmallRNA(si3)            --------->AtMYB61<xxxxxxxxxxxxx -------->YAB1    <---------ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->TOE1(2)<xxxxxxxxxxxxx   tatgagaaaataaaattatggggtgagagaggctcgaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccac  14054500   *TSS  <------------AtMYB77 ->MYB46(1) ->MYB83<---------YAB1 ---->ANAC58 ---->ANAC46 -->AtMYB61 -->DEAR3(1) ---ALFIN1 ->MYB46(3) -ATERF1(1) xxxsmallRNA(fl3) xxxsmallRNA(le3) xxxsmallRNA(se3) xxxsmallRNA(se3) xxsmallRNA(le3) xxxsmallRNA(si3) xxxsmallRNA(fl3) xxxsmallRNA(se3) xxxsmallRNA(si3)                                                                       ------->TEIL xxsmallRNA(si3)                                                                     <---------YAB1 xxxsmallRNA(fl3)                                 <---------YAB1              >>>>>>>>>WRKY18 xxxsmallRNA(se3)                               --------->YAB1               --------->WRKY12 ---->ANAC58                                    <---------ICU4         <---------ARR14(2) --->ABI4(1) <-----------GT1            ----------->GT1                --------->ARR14(2) xxxsmallRNA(le3)                      <---------TOE1(3)         --------->DAG2  <---------DAG2 xxxsmallRNA(s)                        <---------TOE2(3)       ---------->DOF2<---------WRKY18(1) xxxsmallRNA(i)--------->ZAT6<---------TOE2(3)--------->ARR11(3)---------->DOF2  <----------DOF2   cccaactgttactattaacactgttttagttaatgaaattcaaggtaaaatcatgaaacacaaacaaaaggcagaacccttgactttatgaacgtttgac  14054600                                   --------->ARR11(3)                                   <---------ARR11(3)                                   --------->GLK1(2)                                  --------->RVE1(1)     --------->MYB46(3)                            --------->MYB46(3)        ----------->RAV1(1)                           --------->ANAC58        --------->ANAC58                           --------->ANAC58        --------->ANAC46                          ------>NtERF2            --------->ANAC58                         <---------ALFIN1      --------->HSFC1(1)                        --------->ATERF1(1)    <---------HSFC1(1)      --------->HSFB2a(2)          <                       ------>NtERF2           <---------HSFB2a(2)     <---------HSFC1(1)           -                       <---------ATERF1(1)     --------->HSFB2a(2)     <---------HSFB2a(2)      -----   ttatccatcgaaatatagaaatggctgccacccaaaaaatctaaaatttctagaagcaacaactgatgaaattcgagaagaacaatattcttacatataa  14054700                                                                                        <---------ANAC58           <-----------GT1                                                              <---------ANAC46        <---------GLK1(2)                                                           <---------ANAC58      --------->ICU4                                                                <---------ANAC58    ---------->DOF2                                         ----------->RAV1(1)    <---------MYB46(3)   <---------AHL20(2)                                       =======================RAV  <---------ANAC58 --------->CCA1(2)                                  --------->WRKY18(1)        --------->ATHB12 ---------ARR11(3)                          ----------->HVH21            --------->ANAC58    <------- -------->ARR11(3)<-----------HVH21       <---------ANAC55(2)            --------->ANAC58<---------ZAT18 ----->DOF2--------->KAN4(2) --------->AHL20(2)<---------bZIP60(2)     <-----------RAV1(2)   <-------   aagatttaaagattatcccccttcacttaaaaaaaatactaaacacatgacctggtcaagaacaacacaagactcaggcaaacattggttgtgtgcttta  14054800              --------->ARR11(3)                               --------->MYB52(1)              <---------ARR11(3)                        <---------At4g35610             --------->RVE1(1)                          ----------->GT1             --------->CCA1(1)                          --------->At4g35610           --------->YAB1                               <---------ANAC46           <---------ICU4 <----------ID1               <---------AtMYB61            ------>ZmHOX2a(1)           --------->AHL20(2)                        --------->ALFIN1       <---------AtLEC2        - --DAG2<---------YAB1   ----------->GT1             <-----------HVH21  <---------AtMYB61   <---------ANAC58 ---DOF2--------->YAB1---------->DOF2     ---------->DOF2 ----------->GT1  <-------TEIL    <---------ANAC58   ttcgaaactataataatatctgaagaaagtgacaagaagaccagaaaagagagaggtgaggtgaaaaacggttttggtgcatggtcctctctagcgagcg  14054900                                                                                     --------->MYB46(3)                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                    --------->ANAC46                                                                                   ------->TEIL                                                                                  <---------ALFIN1                                                                                 --------->ZAT14                                                                                 <---------ZAT18                                           <---------At4g35610                --------->ZAT2 <-------                                       <---------ANAC58                       <---------At4g35610                                  <---------ANAC58                            --------->At4g35610                          <----------DOF2 <-----------ARR10                  <-----------RAV1(1)                    <----------DOF2<-------GAMYB                           --------->ZAT2   ---------                 <---------ANAC58 <---------ANAC46                         <---------At4g35610           <---------ARR11(3) <---------ANAC58                             ----------->RAV1(2)           --------->ARR11(3) <---------ANAC58                             <---------ZAT2   ---------       ---------->DOF2--------->REM1(1)<---------ANAC58                    --------->At4g35610     -- ----->ZmHOX2a(1)<---------ANAC58 <---------ANAC58            ------>ZmHOX2a(1)  <---------At4g35610   tccttggacaaaagaccttgcgcttcaactttccttgcgttgcgaagctcatcaactccatctcctctctcaaacacagctgctgcacccatccccgtcc  14055000  Previous    Next  AGI:  At2g33140.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 14054466    to: 14054503    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g33150.1    Description:  KAT2/PED1 (PEROXISOME DEFECTIVE 1); acetyl-CoA C-acyltransferase. Identical to 3-ketoacyl-CoA thiolase 2, peroxisomal precursor (PED1) [Arabidopsis Thaliana] (GB:Q56WD9;GB:Q93Z35;GB:Q9S7M3); similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative [Arabidopsis thaliana] (TAIR:AT1G04710.1); similar to acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit (GB:S72532); similar to hypothetical protein [Vitis vinifera] (GB:CAN81585.1); similar to glyoxysomal beta-ketoacyl-thiolase [Brassica napus] (GB:CAA63598.1); contains InterPro domain Thiolase (InterPro:IPR002155); contains InterPro domain Thiolase-like; Range:  from: 14054555    to: 14058217    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version