Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->ARR14(2)                                      ----------->GT1                     <----------TaMYB80                                <---------------AGL15                     <---------GLK1(1)                                 --------------->AGL15                     <---------CCA1(2)                                 ==============================       <---------AHL20(2)                                             --------->TOE2(3)       --------->AHL20(2)                                             --------->YAB1    --------->ARR11(3)--------->ARR11(3)                          --------->MYB46(3)    <---------ARR11(3)<---------ARR14(2)                       <------ZmHOX2a(1)               <-----  <---------TOE2(3)  --------->GLK1(1)                   <---------At4g35610 --------->HSFB2a(2) ----ANAC58         <---------KAN4(2)                    --------->At4g35610 <---------HSFB2a(2) ----ANAC58         ---------->TaMYB80                 <-----------RAV1(2)  <---------LBD16 ------>NtERF2 --->ID1<---------AHL20(2)------>ZmHOX2a(1) ----------->GT1  <---------------AtSPL8 --------->AHL20(2)   ttctaagattttaatttctgggcatatcctgctaaatcgcgagaaatggtataaatttcagatgaggaacaaacttaatctggaaaaaaaatggcacctt  13984200               --------------->AGL15               <---------------AGL15       ---------->ID1     <------MYB46(1)     <---------MYB46(3)     <------MYB83    <---------AtMYB61   <---------MYB52(1)                                                                               - <-----------RAV1(1)                                                 --------->YAB1               --- ==============================MADS_MADS                 <-----------HVH21                       ---- -----DOF2<------NtERF2    <---------ICU4             --------->ALFIN1          <----------DOF2------   taactgttggtcgccttcaaaattgagaaacattacacaaacaaaaactcattcgagtgtgtcatacagtagcataacaagactttcaagagagaaacaa  13984300                                               <---------GLK1(2)                                               --------->ARR14(2)                                   <---------TOE1(2)                                  ------>ZmHOX2a(1) ------>NtERF2                <---------ARR14(2)       ---------->DOF2                      --------- -------->RAP2.3(3)           --------->ARR14(2)      --------->LBD16          --------->ZAT2 ---->GAMYB             ------->GAMYB  <-------TEIL  --------->ANAC46          <---------ZAT2     --- ----->ANAC46          --------->MYB46(3)      <---------ARR14(2)             ------>MYB83 --------->MYB46(3) --->MYB52(1)         --------->At4g35610 --------->AtLEC2   <----------ID1   ------>MYB46(1)  <-----   cgcagccaaaaccatacaactatcaacagacaaatcctagcttcatgcaaattctccgaaagagagacaaaaacaaaacctagctccgaatcaacaacaa  13984400                                                                                                  <--                          --------->ZAT18                         --------->LBD16            <-------                          <---------ZAT18                        <---------ANAC46      <---------AHL20(2)                          <---------ZAT14                       <---------LBD16        --------->AHL20(2)          --------->ARR11(3)                                  <---------ARR14(2)      --------->AHL20(1)          <---------ARR11(3)------->TEIL                      --------->ARR14(2)      --------->AHL20(2)    ------->GAMYB       --------->At4g35610          --------->GLK1(1)                <---------AHL20(1) -->RAV1(1)     <---------ZAT6                       <---------GLK1(1)                <---------AHL20(2) ------>YAB1  ----------->GT1  <----------DOF2      <---------ARR14(2)            <------ZmHOX2a(1) ----ICU4--------->GLK1(1)--------->ZAT14          <------ZmHOX2a(1)      ---------->DOF2  <---------   ttacaacagcgatatctagtgaaaacagcgcacctttgaaagaattaagaagaggatttctagggttccggtgaatcaaagagaggaatttatttagctc  13984500                                                                                             <-------                                                                                    <---------AHL20(1)                                                                                    --------->ARR11(3)                                                                               --------->AHL20(2)                                                                       ----------->GT1       <-------                                                                     <---------ANAC46     <----------                                                                  ----------->HVH21 --------->AHL20(2)                                          ---------->DOF2      --------------->AGL15<---------ARR11(3)                                      --------->AtLEC2         ======================================           ----------->HVH21          --------->ANAC46        <-----------------AGL1--------->AHL20(1)          <-----------HVH21           --------->ANAC58        ----------------->AGL1<---------AHL20(2) -------CCA1(2)                       --------->ANAC58   --------->HSFB2a(1)   <---------AHL20(2) --At4g35610         <----------DOF2---------->DOF2  *TSS<---------HSFB2a(1)  --------->AHL20(2) --GT1   --------->ANAC46  <---------GLK1(1)       <---------ANAC46--------->ATHB12--------->AHL20(2)   atttctcttctccgtcacagtctctttgggtttcccagacaagcaaaagaatggagggaacgtttccagtgatgggaaaattaaaatatatttcactttt  13984600                                                                    --------->ARR14(2)                                                                    <---------ARR11(1)                                                                    --------->GLK1(2)                                                                    <---------ARR14(2)                                                              <-----------GT1                                                           <---------YAB1                                                         <---------ICU4                                                        <---------YAB1                                                        --------->ICU4                                                        --------->AHL20(1)                      --------->AHL20(2)                --------->AHL20(2)           ----------->GT1                ----------->GT1-------->ATHB1 ---DOF2  --------->ZAT6             <---------AHL20(2) <---------AHL20(2) --DAG2  <---------At5g28300        --------->YAB1 --------------->AGL15------>ZmHOX2a(1) -GT1   <-----------GT1       ----------->GT1  --------->KAN4(2)   <---------ARR14(1)          <----- ==================================================================MADS_MADS                  <------   cagtcattttttacagtaacaaaatttaagaactgaaataaaaatggtttattccaaaattattaaaccgaatccttcaaaacttattctatttctaggg  13984700                                                                 <---------MYB46(3)                                                                 ----------->GT1               ------                                                        --------->AHL20(2)                 <---------ANAC46       <-------GAMYB                                    --------->AHL20(1)     <---------AHL20(2)      --------->LBD16                                   <---------AHL20(2)     --------->AHL20(1)    <---------LBD16                               --------->ANAC58             --------->AHL20(2) ----ZAT6        <---------WOX13(1)           ----------->GT1--------->ATHB12 --------->AHL20(2) ---TOE1(3)<---------AtLEC2         <---------ICU4--------->ANAC58            <---------AHL20(2)    -   ttatgctccggttgaatggattgaaattcccaacttattcatttcaaatagtaagaaataaaatgaatggttgtaagaaattaaattagaccgtcgtggt  13984800                                                                                             --------                                                                                      --------->LBD16                                                                                     --------->ANAC46                                                                                    ------->MYC2                                                                                    <-------MYC3                                                                                    <-------MYC2                                                                                    ------->MYC3<----                                                                                   ==================bZIP_DOF                                                                                   ==================bZIP_DOF                                                                                   --------->ANAC46                                                                                   --------->ANAC58                                                                                   <---------TGA1a                                                                                   --------->ANAC58 -                                                 <-----------GT1                   --------->TGA1a <-                                               <---------AHL20(2)                <---------ALFIN1<---            --------->ATHB12            ----------->GT1                 --------->ANAC46     ========           <---------YAB1   --------->AHL20(2) --------->AHL20(2)       --------->ANAC58  ===========           <---------AHL20(2)           --------->LBD16--------->SPL7   --------->ANAC58  ---------->DOF2 --->At5g28300       --------->LBD16   --------->RAP2.6(2)           <---------ARR14(2)--------->ANAC58 -------->YAB1   <-----------GT1      <---------LBD16<---------SPL7  --------->ARR14(2)--------->ANAC58   aattgtaagaaatttcattgaaccggactataaattagaagccggataattaaaccgtaccagcgcttggagaaacgccagacacacgcgcgaaaagaag  13984900                                                                                           --------->TGA2(2)                                                                                          <----------                                                                                          <----------                                                            --------->TGA1a              --------->ANAC58                                                            --------->ANAC46             --------->O2                                                        --------->AtMYB61                --------->ANAC58                                                        <---------ALFIN1                 ============                                                       --------->ANAC46                  --------->ANAC46                                                       --------->MYB46(3)                <---------TGA1a                                                   ===============================HOX2a_HOX2a                                                   ==================================HOX2a_HOX2a                                                   ------>ZmHOX2a(2)                     <---------TGA2(1)                                                  ===================================HOX2a_HOX2a                                                  --------->PCF2                         --------->bZIP60(1)                   <---------ARR14(2)             <------ZmHOX2a(2)                      <---------O2              --------->REM1(2)                   ================================HOX2a_HOX2a            ------->MYC2                         <---------PCF2                          --------->TGA2(1)            ------->MYC3   ==================bZIP_DOF--------->ANAC46                    <---------bZIP60(1)            <-------MYC2   <---------At4g35610   <---------ARR14(2)                      --------->bZIP60(2)            <-------MYC3   --------->TGA1a     <---------MYB46(3)                        --------->TGA1a  --------->WRKY38(1)  <-----------HVH21   <---------DEAR3(1)--------->AtMYB61          <-----------STF1 -->DOF2   <---------ANAC46--------->At4g35610 --------->ABI4(2)                       ------>NtERF2 -------------------TaNAC69(2)    ====================================bZIP_DOF        ----------->HVH21 -------->REM1(2)  --------->ARR14(2)    <---------ALFIN1 --------->ANAC46        <---------At4g35610 --------ANAC46   <------ZmHOX2a(1)     --------->MYB46(3)<---------ALFIN1      --------->REM1(1)   - ------ANAC46--------->ALFIN1     ---------->DOF2--------->ARR14(2)           ------>ZmHOX2a(1) ----- ====================================bZIP_DOF --------->ALFIN1             ------>ZmHOX2a(1)    ----- ====================================bZIP_DOF--------->At5g28300     <---------ALFIN1 --------->DEAR3(1)   cgcgtagaccagaacgtgtaggatttgtcacctcagaaaagaaccacggtggatcccaccacacctcagcctcactcctccttcatctccgacgtcatac  13985000                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                              ------>ZmHOX2a(2)  --------->MYB46(3)                                               --------->ANAC58           <------ -HVH21   *TSS                                                     --------->ANAC58          <------ZmHOX2a(2) -TGA1  <----------DOF2                                  --------->ARR11(3)                 <-------- ==================bZIP_DOF                              <---------ARR11(3)                 --------- -------->ANAC46                                        <---------GLK1(1)               <---------LBD16 ---->ANAC58                                            --------->GLK1(1)          --------->GLK1(1) ---->ANAC58            <---------GLK1(2)   --------->YAB1       ---------->DOF2  --------->ARR11(3)   ccaaaccactcttttctcacaattccgattttctcaaaaaccaaaatcacaatcgaagaaatcttttgaaagcaaaatggaagagatttcgacggatccg  13985100  Previous    Next  AGI:  At2g32940.1    Description:  AGO6 (ARGONAUTE 6); nucleic acid binding. similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21030.1); similar to AGO4 (ARGONAUTE 4), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G27040.1); similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21150.1); similar to AGO4-2 [Nicotiana benthamiana] (GB:ABC61505.1); similar to putative ARGONAUTE9 protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84805.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67397.1); contains InterPro domain Argonaute and Dicer protein, Range:  from: 13979074    to: 13984553    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g32950.1    Description:  COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1). Identical to E3 ubiquitin-protein ligase COP1 (COP1) [Arabidopsis Thaliana] (GB:P43254;GB:O23974;GB:O23975;GB:O48770); similar to SPA4 (SPA1-RELATED 4), signal transducer [Arabidopsis thaliana] (TAIR:AT1G53090.2); similar to SPA4 (SPA1-RELATED 4), signal transducer [Arabidopsis thaliana] (TAIR:AT1G53090.1); similar to E3 ubiquitin-protein ligase COP1 (Constitutive photomorphogenesis protein 1) (GB:P93471); similar to COP1 homolog [Lycopersicon esculentum] (GB:AAC98912.1); similar to constitutively photomorphogenic 1 protein [Pisum sativum] (GB:CAB89693.1); contains InterPro domain WD40 repeat-like (Int Range:  from: 13985010    to: 13990612    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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