Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                 ------>NtERF2                                --------->DEAR3(1)   XXXXXXXXXXXXXXXXXXXX>MIR407                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                xxxxxxxxxxxxxxxx>smallRNA(i)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <---------ARR11(3)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              --------->LBD16                             <xxxxxxxxxxxxxxxxsmallRNA(i)                      <---------HSFC1(1)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              --------->HSFC1(1)                            <xxxxxxxxxxxxxxxxsmallRNA(i)                       --------->HSFB2a(2)                        --------->AHL20(2)         <---------AHL20(2)          <---------HSFB2a(2)  -                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <xxxxxxxxxxxxxxxxsmallRNA(s)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------DAG2            -               <---------------AtSPL8----------->RAV1(2)                  <----------DOF2   ---------      <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------MYB46(3)--------->YAB1 <   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxx>smallRNA(le3)<---------AtMYB61 ----------->GT1 <   ------>NtERF2 <----------ID1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-------GAMYB ---------->DOF2 ---  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>ZmHOX2a(1)       <----------DOF2<---------LBD16     ---  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->LBD16  --------->YAB1--------->WRKY12--------->ARR11(3) -->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)<---------WOX13(1)    ----------   atcgccaacttttaaaaatgggacaaaaaaatcgccaactcctgaaatgtcatttaaatcatatacttttggttgacttttccagaaagataataaagca  13873400                                                                                   <---------MYB46(3)                                                                                  <--------P                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->ANAC55(2)                                                      <-----------RAV1(2)   <---------ANAC55(2)                                                   xxxxxxxxxxxxxxxx>smallRNA(i)   --------->YAB1                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-------TEIL                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------->ARR14(2)                                 <XXXXXXXXXXXXXXXXXXXXMIR407 <------ZmHOX2a(1) -------->ARR11(1)                                 ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) >DAG2                                           --------->YAB1     --------->ANAC58<------MYB46(1) ---------ARR14(2)                       --------->ARR11(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------GLK1(2)                        <---------ARR11(3) ----------->GT1 <---------LBD16 <-------- -------->ARR10                      ---------->DOF2       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>ICU4                  <---------YAB1    <---------ATHB12    --------->ANAC46----------->GT1<x >DOF2                     <---------MYB52(1) --------->WOX13(1)    --------->ANAC58<------MYB83 <xxx   aagattcgtaatcaacaaaactttgctctgttatctttctaaagaactcaatcaaaagtatgtgattaaaacgacatttcaggagttggtgatttttcat  13873500                                                           --------->REM1(1)                                                       <---------At4g35610                                                    <---------ZAT14                                                   --------->ALFIN1                                                 <---------ANAC58                                                 <---------ANAC46                                            -------->ATHB1<-------TEIL   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            --------->ATHB51           ------->TEIL                                            --------->ATHB12          <-----------GT1                    <---------AHL20(2)     <---------YAB1<---------------AGL15                   <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  <     <-----------------AGL1              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <-----    <xxxxxxxxxxxxxxxxsmallRNA(i) <-----------GT1 <---------ANAC58  --------------->AtSPL8      ------ xx>smallRNA(le3)  <---------AHL20(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   <----- ---GT1---------->DOF2   <-----------GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <----- xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ARR11(3)<---- xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)>>>>>>>>>>>>>>>>>LFY --------->At4g35610    <-----------GT1  <-----   cccatttttcaaagttggcaatttttttgacattttttccaatgtattattgagtgtagctacatgaagtatgaaccatttatcttgacatagcattgcg  13873600         --------->AHL20(2)         <---------ICU4                            --------->AHL20(1)        --------->AHL20(2)            <----------DOF2        <---------AHL20(2)         <---------ALFIN1<---------AHL20(1) ----------DOF2                   -------->P    --------->YAB1 ----ANAC55(2)                    ------>MYB83 <---------YAB1 --->ANAC55(2)                    ------>MYB46(1)  <---------AHL20(2)                         <------ ----ANAC58             --------->YAB1<---------DAG2           --------------->AGL15      <----------DOF2 ----ANAC46             --------->AHL20(2)   --------->YAB1 <-----------GT1             --------->At4g35610 -----ZAT18          --------->YAB1--------->REM1(1)      <-----------GT1               <---------At4g35610 ----ANAC58    <----------DOF2  --------->AtMYB61  --------->AHL20(2)                 <---------RAP2.3(3)   tactttgaaaataatttctttactaataaaaaaacctacacttttttttataataaattttttcactctgtttagaaaccatgaattggctgctctaacg  13873700                    --------->TOE1(2)                  ------>MYB83                  ------>MYB46(1)                  -------->P                <---------MYB59              ------>NtERF2                                  --------->DAG2            <---------RAP2.6(2)                       --------->ANAC58        --------->HSFB2a(1)                           --------->ANAC58        <---------HSFB2a(1)              ---------->DOF2    ---------->DOF2        --------->HSFC1(2)  --------->WRKY12      --------->YAB1        <---------HSFC1(2)  --------->WRKY38(1)  <---------ATHB12 ---TOE2(3)--------->RAP2.6(3)  <----------DOF2--------->WOX13(1)            --------->MYB59      <--   attcaagagaaatttcggcctaccttcgagttgactttagattaaaagtcaatcacaggcccaaaagtaagcccataactaggtccaaatatcgaagccc  13873800                                             --------->TOE2(2)                                             --------->TOE1(2)                              --------->ANAC58                  --------->ARR14(2)       <---------ATHB12                                   <------       <---------DAG2         --------->ANAC58   *TSS<---------ARR11(3)                       -------       <----------DOF2 ---------->DOF2    ------>MYB83 ------>ZmHOX2a(2)                      <------    <-----------GT1   ------>ZmHOX2a(1)   ------>MYB46(1)             --------->WOX13(1)      ------- -------ATHB12    <---------ARR14(2)  >>>>>>>>>>MYB80--------->ARR11(3)       ------>ZmHOX2a(2)   atgaataaactttttcatcgaatcctaaagctaagcatcaaaccaaacatccgatgatctctccaaactcatcaatctgatctatctctctcttccagct  13873900       ------>ZmHOX2a(2)                                                       <----------DOF2   <---------YAB1                                                           ---------->ID1          < --------->YAB1                             --------->ZAT14                 <-----------GT1      <--- ---At4g35610                      <---------YAB1                          <-----------GT1      <---- -->ZAT2                   --------->At4g35610                       <----------DOF2           <----- ---ZAT2    <-----------GT1<---------ZAT2<---------At5g28300      --------->GLK1(2)          ------>ZmHOX2a(2) -->At4g35610              <---------At4g35610                   <---------GLK1(2)     --------->YAB1   gtttcatgatcgatttactcttaacttacagctgattacaattcactgtaatctctcaagaaccctagattcttttttttccttttcaattgtgatccgt  13874000                                                                       <-----------GT1                                                               --------->ANAC58                                                               --------->ANAC46        <---------ARR14(2)                                     --------->ANAC58   ----------->GT1                                          --------->ARR14(2) ---------MYB52(1)                                          <---------ARR14(2) --------RAV1(2)                            ---------->DOF2 <XXXXXXXXXXXXXXXXXXXXMIR844 -----MYB52(1)                            <---------HSFB2a(2)---------->DOF2          <----------DOF2 ------HVH21      <----------DOF2     --------->GLK1(1)  <---------ANAC46     ---------->ID1  <------   caggtatgtgaattcgattactttctatatcaattcaacgaattccaaaagtcatgttcgcgtataagcaatttaaccttgtcgatttctttatattttc  13874100                           --------->AHL20(2)                           <---------AHL20(2)                         <----------DOF2                        ------>ZmHOX2a(2)        <------ZmHOX2a(2)                      <---------ARR11(3)        <---------ARR11(3)                  <---------ANAC58      <---------ARR11(3)                  <---------ANAC58     <---------CCA1(2)         <---------At4g35610           --------->GLK1(1)                       <---------AHL20(2)   <     --------->ALFIN1 --------->ARR11(3)--------->ARR11(3)       --------->AGP1--------->AHL20(2)   <  ------->TEIL  --------->ICU4         <---------GLK1(1) <---------TOE2(3)<---------ARR11(3)       <- -----GT1--------->At4g35610     <-----------GT1--------->ARR11(3) ------>ZmHOX2a(2)        <--------   tctgtatgtgtagcagcaatgcttgatctttaaatttactgatatctgaagatcgaattagggttctgatctacttgatatttatttgtttgggctttta  13874200                                                                             <----------DOF2  ------>ZmHOX2a(2)                                                                            --------------->AGL15                                                                            <---------------AGL15                                                                           ----------------->AGL3                                                                           ----------------->AGL2  --                                                                           <-----------------AGL3  <-     --------->MYB52(2)                                            --------->CCA1(2)        <--------   <--------P                                                     --------->ARR11(3)   --------->ZAT2 ---------TOE2(3)                                                 --------->ARR14(2)   <---------At4g35610 ---------TOE1(3)  <---------AHL20(2)        <---------CCA1(2)    <---------ARR11(3)   <---------ZAT2 ----------RAV1(2) --------->AHL20(2)     <-------TEIL            <---------ARR14(2)   --------->At4g35610 --DOF2          <---------YAB1 -------->ATHB1        <----------DOF2   <---------GLK1(1)   ---------   ttcaggttagtgtctgtttattaaaacaatcgaattattctgagttcatatcatttctttggattgaagatttgaattccttttatagcagctcgatctt  13874300  Previous    Next  AGI:  At2g32698.1    Description:  MIR407; miRNA Range:  from: 13873282    to: 13873544    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g32700.1    Description:  WD-40 repeat family protein. similar to LUG (LEUNIG) [Arabidopsis thaliana] (TAIR:AT4G32551.1); similar to STY-L protein [Antirrhinum majus] (GB:CAF18246.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46107.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73936.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain LisH dimerisation motif, subgroup (InterPro:IPR013720); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain LisH dimerisation motif (InterPro:IPR006594) Range:  from: 13873849    to: 13879234    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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