Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                        --------->ATHB51                                                                                        <---------ICU4                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(2)                                       <----------DOF2                                 <---------AHL20(2)                                    --------------->AGL15                              --------->AHL20(2)                                   <-----------------AGL2                              <---------AHL20(1)     ----------->GT1             <-----------GT1                                    --------->AHL20(1)  --------->GLK1(2)            <---------AHL20(2)                                   --------->AHL20(2) <---------ARR14(2)         <---------ARR11(3)            --------->ATHB51          <---------AHL20(2) --------->ARR14(2)       --------->ICU4           <------ZmHOX2a(1)                <---------AHL20(1) <---------GLK1(2)        <---------YAB1         <---------TOE2(3)                 --------->AHL20(2) -AHL20(2)              --------->YAB1 <---------DAG2     <---------ICU4           <---------AHL20(2)   tcagaacctgttaaaaacatatgctgtcatgattttatctacttttggttttaggatgaataatttcatataagaactatacaaaataaattatttcaca  13741600                                                                        <---------MYB52(1)                                                                        ----------->HVH21                                                                      --------->ANAC55(2)                                                                      <---------ANAC58                                                                      <---------ANAC46                                                                      <---------ANAC55(2)                                                                      <---------ANAC58                                                          <------ZmHOX2a(2)                                        --------->HSFB2a(2)           <---------ANAC55(1)                                        <---------HSFB2a(2)--------->YAB1                                    ------->GAMYB        <---------ARR11(3)                            <---------AHL20(2)           --------->ARR11(3)              <---------At4g35610  --------->MYB46(3)   <------ZmHOX2a(1)         --------->TOE1(3)              --------->At4g35610<-----------GT1      <---------TOE2(3)--------->LBD16     ------->TEIL      <---------AHL20(2)        <-----------GT1 <---------AHL20(2)               <-- ----GT1      <---------ZAT2--------->AHL20(2)<---------ICU4  <---------ICU4      --------->TOE2(3)<-   ttccatgtatcaactcagcttctaattcatttttttaaccatctcgaatttttacttaggatcatatttattccgtgactcaaaccttaaatttttgaat  13741700                      <---------AHL20(2)                    <---------YAB1                  --------->YAB1                 <---------YAB1                                                 --------------->AGL15                 --------->ICU4                                                 <---------------AGL15               <--------HAHB4                                                  ----------------->AGL2               --------->YAB1                                                  ----------------->AGL3         <---------ARR11(3)                                                    ----------------->AGL1         --------->ARR11(3)                                                    ----------------->AG        <---------CCA1(2)<-----------GT1                                     --------->AtLEC2 ---------GT1 <---------YAB1                   --------->At5g28300       --------->ARR11(3) --------At5g28300<---------ICU4      <---------AHL20(2)                 <---------ARR11(3)     -----   ttacagctatatatctattattattattttcagttttcattttttttgctgtgaatgctaaactagacaatcgaatatcatgccaaattcagttactatc  13741800                                                                           <-----------ARR10                                                                           <---------ARR14(2)                                                                           --------->ARR11(3)                                                                           <---------ARR11(3)                                                                          --------->RVE1(1)                                                                         ------->TEIL                                               ------>MYB46(1)        <---------YAB1                                               ------>MYB83         --------->YAB1                        ------->GAMYB        <---------MYB59     --------->YAB1                     --------->MYB52(1)     --------->ANAC46    <---------YAB1             <---------ZAT6      --------->ANAC46           <---------GLK1(2)        --------->TOE2(3)        --------->ANAC58 XXXXXXXXXXXXXXXXXXXX>MIR849              --------->MYB46(3) ---->YAB1   ----------->GT1     --------->ANAC58<---------MYB52(2)<---------YAB1   ------->TEIL   acgacgagaaccatagtgttatataacagacacacacacaaacaagacccaactaaacatcagaatattatcatgaatatcttatgcatttcaacaactt  13741900                                            <------------CBF                                         --------->ANAC58                                         <---------ANAC55(2)       <-----------GT1              <---------AHL20(2)  <---------AHL20(2)          <----------DOF2                    <---     <---------ALFIN1             <-----------GT1     --------->YAB1                  --------->YAB1    <---------ZAT14     <---------ANAC58 --------->ANAC55(2)  <---------DAG2       <---------GLK1(1)   >>>>>>>>>>>>>>>>>LFY <---------ANAC58 --------->ANAC58     ------>ZmHOX2a(1)  --------->YAB1  ----   gcattctccactgtatatatatgtgtgcgtctatatttacattacgcattgtggaatcatagtcctttttcaccataacataagcatatcagaacacatt  13742000                                                                        --------->ARR14(2)                                                                        --------->GLK1(2)                                                                        <---------ARR14(2)                                                                       <---------GLK1(2)                       <---------YAB1     --------->ANAC58      <---------ZAT18                   <--              <---------YAB1              --------->ANAC58    --------->At4g35610        --------->ANAC58 <-----------GT1      *TSS            --------->ANAC46        <---------At4g35610        --------->ANAC58 ------AHL20(2)       ------------>CBF--------->ANAC58   <---------GLK1(1)            --------->WRKY18(1) ----->AHL20(2)--------->YAB1         --------->ANAC58   --------->GLK1(1)   <-----------RAV1(1)  ---   tttttactctgaaaatatgatagtgacaattgtttcatacacacaagaattcacaatggaaatcagcgaacaagaatctgtgttggaggtcaagaaacgt  13742100                             --------->HSFB2a(2)                             <---------HSFB2a(2)               <---------ARR14(2)               --------->ARR14(2)                                                                   <              <---------At4g35610                                                                 ---              --------->At4g35610                                                             -------      <---------GLK1(2)<---------ARR11(3)                                                   --------- <------ZmHOX2a(1)     --------->ARR11(3)                                                   <-------- -------HSFB2a(2)    ------>MYB83                                      ----------->HVH21   <---------ATHB12 ------>HSFB2a(2)    ------>MYB46(1)   <----------DOF2  --------->GLK1(1)                --------->WOX13(1)   ctaggacagtttcttcagataccaacatcttctataactctctttgtctcttgttgggaactcatcgacggtcttgacatcgaagattacccaatcatct  13742200                                                                  <---------MYB52(1)                                                                 ========================MYC_MYB                                                               <------NtERF2                                                              ------>NtERF2                                                              --------->ABI4(1)                                                             --------->RAP2.3(3) --------->TGA2(2)                                                             --------->RRTF1(3)  ----------->HVH21                                                             --------->RAP2.3(2)<-----------TGA1                                                             --------->DEAR3(1) <-----------HVH21                                                             <---------DEAR3(1)<---------O2           --------->GLK1(2)                                --------->ERF1     --------->TGA1a          <---------GLK1(2)              <---------SPL7     --------->RAP2.3(1)<---------TGA1a     ----------->RAV1(1)                 --------->ABI4(1)  --------->RRTF1(1) --------->bZIP60(1)     ------>NtERF2                       <---------ZAT14    --------->ORA47(2) --------->bZIP60(2) --------->ANAC58                        <---------ABI4(2)  --------->RAP2.6(1)<---------bZIP60(1) <---------O2                            --------->ZAT14    --------->ATERF1(1)--------->O2 --------->TGA1a                        --------->DEAR3(1)  --------->DEAR4(2) --------->ANAC46 <---------TGA1a                 <---------DAG2            ------>NtERF2       --------->ANAC55(2) --------->O2                    <----------DOF2           <---------ATERF1(1) --------->ANAC55(1) --------->ANAC55(1)            <---------DAG2            --------->ANAC58     <---------ANAC55(2) --------->ANAC58        --------->ARR14(2)      ========================================bZIP_DOF ===========================================bZIP_DOF      --------->ANAC58     --------->ANAC58 --------->ANAC46       <---------MYB52(1)       <----------DOF2 <-------GAMYB --------->ANAC58  <--- ---------LBD16        --------->At5g28300   --------->DEAR3(1)--------->RAP2.3(1)    <-----------HVH21 -------->HVH21   ----------->HVH21    --------->ANAC46 <---------ALFIN1      <-----------STF1   ---- -->At4g35610    --------->AtMYB61   <-----------GT1 <-----------GT1 ----------->GT1 --------->DEAR3(1) >YAB1<------NtERF2   --------->ANAC46<---------At5g28300 --------->ANAC46   <-----------GT1    ----- -ICU4--------->At4g35610<-----------ARR10<---------ALFIN1--------->O2<------ZmHOX2a(1)<---------MYB52(1)   ctcacggcaccagaatcgacctcaccgtaactccccttttcaccgcaccgtcttttatccacgccgccgttaggaaaattcacgtcaccgtcaagttccc  13742300                                                                                                   --                                                                                                   --                                             --------->ANAC46                                  <-----                                         --------->ZAT6               <---------YAB1         <-------          <---------At5g28300        --------->At5g28300   --------->DEAR3(1)              --------->ATHB12        <---------ZAT14             ----------->GT1       --------->At4g35610           <---------ANAC58        --------->ZAT14     <-----------------AGL1        <---------At4g35610        <---------GLK1(1) --------HVH21             --------->ARR14(2)--------->ANAC58------>MYB46(1)         --------->GLK1(1) ----->LBD16               <---------ARR14(2)--------->ANAC58------>MYB83         <---------TOE2(3)-- ---->ANAC46--------->DEAR3(1)   --------->MYB52(1)     <-----------GT1<-----------GT1  <---------ANAC58   gtcaaaacagttcaccgtcgaagtagacagaaccgaaacggtaatactagcaacatgttcacctcccatcttattacagtttttgagatttcttgattaa  13742400                                         <-------TEIL                                        --------->CCA1(2)                                       --------->ARR14(2)                                         ---                                       <---------GLK1(2)                                          <--       <---------TOE2(3)               <---------ARR14(2)                                         --- ------->ANAC58                  <------ZmHOX2a(1)                                       <---------HSFB2a(2) ------->ANAC58            <----------DOF2                                               --------->HSFB2a(2) ------GT1               --------->At4g35610                                ----------->GT1    ------ --WOX13(1)        <--------P---------->DOF2                      --------->DAG2        <---------LBD16 ------->ANAC46<---------AtLEC2 <----------ID1                   ---------->DOF2 <-----------GT1  <--   caagctactaatgttttgcaggtaagtagcttaaaggacaagattcacattgttgagaacacaccgataaagcgaatgcagttatactattctgggatcg  13742500  Previous    Next  AGI:  At2g32340.1    Description:  TraB family protein. similar to TraB family protein [Arabidopsis thaliana] (TAIR:AT1G05270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24159.1); contains InterPro domain Pheromone shutdown-related, TraB (InterPro:IPR002816) Range:  from: 13739324    to: 13741611    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g32350.1    Description:  similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G05230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24150.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 13742022    to: 13742865    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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