Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                          --------->At4g35610                                                     ---      ----------->GT1    ----------->RAV1(1)                                                 --------    ----------->GT1   --------->ANAC58                                                     <------ZmHOX2a(1) ------->DOF2         --------->ANAC46                                                --------->CCA1(2) --HSFB2a(2)          --------->ANAC58                    --------->AHL20(2) <---------At4g35610  <-- ->HSFB2a(2)   ----------->GT1   <----------DOF2          <---------AHL20(2) --------->At4g35610  <--   aaaagaaggtgtaaaacaagttaaacgcagcataactttgctctcaagcttgttgaagaattaattctcagtcgaattcatctgcaagagacaggaagaa  13688900              --------->AHL20(2)              <---------AHL20(2) ------>AHL20(1) ------>ARR11(3)                                                                          --------->YAB1 --->GT1  --------->AHL20(2)                            --------->ZAT14         ---------->DOF2 -------ARR11(3)     --------->At4g35610        ---------->DOF2          --------->HSFB2a(2)    ----- -------AHL20(1)     <---------At4g35610    --------->At4g35610          <---------HSFB2a(2) --------   aatattcaagaattaaaaaaatgagctgtttacacttagtctaagcatctaaaagctctatagtctatacattatcgagaaataaagagcaataacaaca  13689000                                                --------->LBD16                                               --------->ANAC46                                            <---------ARR14(2)                        --------->ANAC55(2)                                            --------->ARR14(2)                   <---------MYB46(3)                          <---------LBD16 <---------AHL20(1)                <---------ARR11(3) <----------ID1          --------->CCA1(2)<---------ARR11(3)                --------->ARR11(3) -->GAMYB              --------->CCA1(2)  --------->ARR11(3)               <<<<<<<<<RAP2.2 --->RAV1(1)     --------->TOE2(3)  <-----------GT1  ---------->DOF2   <----------DOF2<---------ANAC55(2)   gagaagacaaaattgaaaacctttgatatacgggcaatttacaatatatccgaaacaaagtccaagaacaaaactttagatattggttatgtaagaatgt  13689100                                                             --------->ARR11(3)                                                             <---------ARR11(3)     <---------ALFIN1                                                       ----------->GT1            ----------->RAV1(1)                                                      <---------MYB46(3)       --------->ANAC58              ---------->DOF2                     --------->ATHB12             --------->ANAC58   gagttagtagtcgataaaaaggagtagaaatgtgaagaaacatggaaattgttcattgggtaatatcgtcgaacaggttgaaggcaacacataagaattt  13689200                                                                                      <---------ZAT2                                                                                  <---------ALFIN1                                                                                 <---------REM1(2)                                             ----------->GT1                   --------->ETT(2)     -                                           <---------ANAC46     ---------->DOF2<---------WRKY38(1)  <       <---------ARR11(3)               <-----------RAV1(1)----------->GT1     <---------ETT(2)    <-       --------->ARR11(3)           <----------DOF2       ----------->GT1  <---------AtMYB61  ------>ZmHOX2a(1)   ---------->DOF2              <----------DOF2         ---------->DOF2  <----------DOF2   ----------   tgagaaaaagaacttacatcgaaccagagagaaactttctttctggtgggaaaattggaaaagataaaaagacgactttggtcgacacagcttgtccttc  13689300              <---------ARR11(3)              --------->ARR11(3)     --------->ARR11(3)             *TSS     ----------->GT1<---------ARR11(3)                                       <------    <---------At5g28300            <---------TOE2(3)                                          -------   <-----------GT1   <---------TOE2(2)                        --------->GLK1(2)      <---------bZIP60(1) -------->ARR14(2)   <---------TOE1(3)                       --------->ARR11(3)      --------->O2 ---------ARR14(2)   <---------TOE2(3)                       <---------ARR11(3)      <---------O2 -----ZmHOX2a(1)     <---------TOE1(2)--------->CCA1(2)      <---------GLK1(2)       --------->bZIP60(1) >ID1      <---------GLK1(2)   <------------CBF<-----------HVH21           <----------DOF2    <------   aggattcaccatggattatctccaaggttaatagattgagatataagagtgtcatgggatagagattttggatgctactttctaacgacgtcgttttagg  13689400                               --------->RAP2.6(3)                              --------->MYB52(1) ---------AtSPL8    ---------->DOF2      <---------ICU4              --------->ANAC58             <-- -->MYB59<-----------GT1    ---------->DOF2 <-----------GT1          --------->ANAC58          <----- ---TOE2(3)      ------>ZmHOX2a(1)  <---------MYB59      <----------DOF2                 <-----------   tactctgtttatttctatcctgtgaagcccaaaaacggcctaatatttacacattagggctttagaagaaaacgctagggttttaaaaattgggtttttt  13689500                                                                                <---------MYB52(1)                                                                              <---------ANAC58            <---------ANAC58                                                  --------->ANAC55(2)         <---------RAP2.6(2)                                                  <---------ANAC55(1)        --------->RAP2.6(3)                                                   <---------ANAC55(2)     <---------DAG2                                                           <---------ANAC46     <----------DOF2                                                          <---------ANAC58  ---------->ID1                                   ----------->GT1         <---------ARR14(2) --------DOF2          <---------YAB1            ------>ZmHOX2a(2)         --------->ARR14(2) ------GT1  <---------ANAC58                   --------->AGP1        --------->WRKY18(1) <-----------GT1 -------------ANAC81 --------->YAB1            --------->ARR11(3)   <-----------HVH21<---------ANAC46   ctttctccttttcggcttgtcaattttgattttgggttacaaacttactgatctagataaaacccagaccggtcatggttccgtcttgtgtttacaacat  13689600                                              <---------GLK1(1)                                           --------->ANAC46                                       --------->ANAC58                            --------->YAB1 --------->ANAC58                           <---------YAB1  --------->ANAC58                                --------->ANAC58                         --------->YAB1--------->ANAC46       <---------TOE2(3)            --------->ANAC58                  ---------->DOF2      --------->ANAC58      <-----------GT1               --------->ANAC46              --------->TOE2(3)  --------->MYB46(3)        <---------AHL20(2)  XXXXXXXXXXXXXXXXXXXX>MIR400   tgtttagcgcataaaacattaaaagaagaatgataacaaacacacaagaaatcacttccattttaacgaatgaaacatatttaagagtattacaagtaag  13689700                  <<<<<<<<<<<<<<<<<LFY               --------->ANAC46              --------->ARR14(2)                     --------->ANAC58              <---------ARR14(2)      <---------STY1(2)--------->YAB1     <---------ARR11(3)    <----  --------->ZAT18----------->HVH21   -------->P      --------->ANAC58     --------->ARR11(3)   ------   cgaatgcacaagagagtatatgacaatggaacgtatagctacctagtatctatacaagcatgaaacagagtgtgaatgtcttcttatctacagaaaacct  13689800  Previous    Next  AGI:  At2g32230.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to antiporter/ drug transporter [Arabidopsis thaliana] (TAIR:AT2G16650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43428.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 13686606    to: 13689313    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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