Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               ======================RAV           ----------->RAV1(1)          --------->MYB46(3)        <---------ARR14(2)        --------->ARR14(2)     --------->bZIP60(2)       <------ZmHOX2a(1)  ------->GAMYB    <------ZmHOX2a(1)    --------->MYB46(3)        ----------->GT1      --------->HSFC1(1)      <---- <-----------RAV1(2)   ----------->RAV1(1)        --------->DAG2        <---------HSFC1(1)      <---- --------->RAV1(1)   --------->At4g35610    ----------->GT1             <---------HSFB2a(2)--------->ANAC55(2) ----->At4g35610  --------->At4g35610--------------->AGL15   <----------DOF2      --------->TOE2(3) ------At4g35610<------ZmHOX2a(1)    <---------------AGL15   <---------DAG2<<<<<<<ZML2  <---------ATHB12 ---->ANAC46 <-----------RAV1(2)  --------->ZAT6 ---------->DOF2        --------->HSFB2a(2)<---------ANAC55(2)   gcaacaggaggaaccacaggagcagcaacagcctcatcactaaaaattgaaaaaagtataaaactttatcaattctagaactaaacttaaatcatgtaat  13647000                                                  ---------->DOF2                                              --------->WOX13(1)                                             <---------------AGL15                                          --------->ANAC58                               --------->ANAC58  --------->YAB1                                    --                      <---------ANAC58    --------->ANAC46             <---------MYB59     --------->YAB1 -----YAB1 ---------->DOF2     --------->ANAC58 <---------ATHB12   --------->ETT(2)        --------->TOE1(3) -----ATHB12          <---------ANAC58    --------->ANAC58         <---------ETT(2)        --------->TOE2(3)   caatggccaactagaaagtttggagcttgaggcacacatagaataagccaatcaaagtaataacatctatcgacctaaaactaaaactctaaaccataat  13647100        <---------ATHB12     --------->ATHB12                               ------->TEIL    <---------ATHB12          ----------->GT1     <-------TEIL            <<<<<<<GRF7      <---------At4g35610    --------->MYB46(3) <---------YAB1          <---------At4g35610      ----------->HVH21  --------->ZAT2   -------->P    --------->AHL20(1)            --------->At4g35610    ----------->RAV1(2)  <---------ZAT2  --------->WOX13(1)   <---------TOE2(3)    ---------->DOF2         -------->P             --------->At4g35610 ----->TEIL      <---------ARR11(3)  --------->GLK1(2)         <-----------ARR10   ------->TEIL   gtatcaaccattgattcagtatattaagaatggagtaagaatccaatatagctgcatcttaagagaaacttaccctgacatattgaatctttgagctggt  13647200                                                                                              -------                                                                                              <------                                                                                             ------>MYB46(1)                           ----------------->AG                                              ------>MYB83                       <----------DOF2                                   ---------->DOF2   --------->AtMYB61                    <---------ARR11(3) --------->ANAC58              <-------TEIL          ------->GAMYB                ---------->DOF2--------->ARR14(2)                <---------ICU4          --------->ANAC58             --------->ANAC58  --------->GLK1(2)                --------->AHL20(2)   --------->ANAC46             --------->ANAC58  <---------ARR14(2)     <---------ATHB12<---------ANAC55(2)--------->ANAC58    --------->SPL7  --------->ARR11(3) --------->ANAC58         <---------ATHB12   <-----------GT1   tttccgaacgaagagaagcaaaggtcttttccaaatctgccaaggaaatgaagcaaatcagtctcaataaatacataaatcgaaattacacaaccaaatc  13647300                                                                    --------->DAG2                                                                   ---------->DOF2                                                               --------->ANAC58              *TSS                                                               --------->ANAC58           ---------->DOF2                                                          <---------ARR14(2)           <-------------           ---------->DOF2                                <-----------ARR10            --------------    --------->At4g35610                                   --------->ARR14(2)           --------->TOE1(3) <------ZmHOX2a(1)           <-------TEIL                <------ZmHOX2a(1)             --------->TOE2(3) -->ARR14(2)            --------->YAB1    ======================HOX2a_HOX2a          -------->P ---ARR14(2)         --------->WOX13(1)   <------ZmHOX2a(2)    --------->ANAC46   <---------MYB52(2)   ggaggaagatgaacaaagtaagacaatcacatacatgaacacagatcaattttcagtgaggaactacgcaaaagtgagtaagagactaaccttaaagaga  13647400                                                                                              -------                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                            ------->TEIL                                                                                         <---------MYB52(2)                                                                                         --------->ANAC58                                                        ------->TEIL                     --------->ANAC58                                             <---------TOE2(3)                   <---------GLK1(2)                                       <---------AHL20(1)                        --------->ARR14(2)     <------NtERF2                     --------->AHL20(1)                   <-----------GT1 --------- --AGL15      ------------------------>ANAC81<---------TOE1(3)   --------->YAB1  <---------ARR14(2) < ->AGL15      ----------->GT1    ----------->GT1   <-----------GT1 <-----------GT1   <-----------HVH21   gagaggctgcaacgaagagcaaaaaatgagtagcgaagttatatattagggttttacgaaccctgaattatacgattttaacagatttgtcacgaacctg  13647500     <----------DOF2     --------->TOE2(3)     --------------->AGL15     <---------------AGL15                     ------>ZmHOX2a(1)           <---------ICU4     ==============================================MADS_MADS           <---------AHL20(2) -->TOE1(2)                                    <----------DOF2     <---------MYB46(3) -->TOE2(2)                            <---------LBD16            <---------TOE1(2) --->RAV1(2)                         --------->ARR14(2)          <---------MYB52(1)              ---- --ZAT2                              <---------ARR14(2)        <---------ANAC46                 <---- ->ZAT2                              --------->ARR11(3)        <---------ANAC58             --------- >GLK1(2)                            <---------ARR11(3)        <---------ANAC58             <-------- ----------DOF2<----------DOF2   <-----------------AGL3      <-----------HVH21        <-----------GT1   ggctctactttaatgggctttactgggccattccttcaatatctgggtccttttaaaaaacgctgtcgtttgtttaatctttcccaattttcatctttaa  13647600                                                                                                   <-                --------->GLK1(2)                                                                  <-                --------->ARR14(2)                                                    <---------CCA1(2)                <---------ARR14(2)                                             --------->ARR14(2)  --         --------->ZAT14                                                       <---------ARR14(2) ---        <-----------HVH21                                          <---------YAB1 <---------ANAC55(1)   <-----------GT1                  ------>ZmHOX2a(1)           --------->AHL20(1)<---------ANAC46--- ----->ICU4 --------->ANAC46<-----------RAV1(1)                 <---------AHL20(2)<---------ANAC55(2) -----TOE2(3)  <---------GLK1(2)    <----------DOF2             --------->AHL20(2)--------->ANAC55(2) >TOE2(3)<---------ZAT14   <---------TOE2(3)           ----------->GT1   <----------ID1   <----------DOF2 --DOF2--------->ANAC46  <---------AHL20(2)     <-----------GT1--------->AHL20(2)<-------TEIL--------   tgtttaaacacttcacagaatccacaatttatgttgtcctttaagtcttttaacacattgtgaaattttattaataggccaaatacgtatacctttgata  13647700              <---------YAB1           <---------YAB1         --------->CCA1(2)        --------->ARR11(1)        --------->ARR11(3)                                                                      -----      <---------TOE2(3)                                                                         -----  <----------DOF2                                                                             <------ --------AHL20(1)                                                           --------->ANAC58  <------ --------ARR11(3)     <------ZmHOX2a(1)                             --------->TOE2(3)         ------- ------->ARR11(3)    <----------ID1             --------->AHL20(2)  <----------DOF2  --------->ZAT18 ------>RVE1(1)    --------->DAG2            --------->YAB1--------->At4g35610       <---------ZAT18 ------>CCA1(1)   ---------->DOF2   <----------DOF2        <---------At4g35610       <---------ZAT14 ->YAB1 <---------ARR11(3)          <---------DAG2    <---------ANAC55(2)   --------->ANAC58  <------   atatctttaagatatgatgaaaaaggacatatatcaaactttttttttcataaattaagtgagatgctatctttaaacaagtaagagagcacaataccaa  13647800     --------->YAB1                                         --------->TOE2(3) ->MYB46(1)                                               --------->GLK1(2) ->MYB83                                                --------->ICU4 ---MYB46(2)            <---------YAB1             ----------->GT1 --------->AHL20(2) ---MYB59        <---------ANAC58               <---------ATHB12  <---------AHL20(2)             <--- -->AtMYB61      <---------ANAC58            --------->TOE1(2)    --------->AHL20(2)          <------ ---MYB111(1)  --------->ARR11(3)            --------->TOE2(2)  --------->YAB1            <----------DOF2   accaaaatcagagtttagttcttgtgatcatacacttcttaaaacaacctatgatgtaataatctaaaataaataacataacctgtttaaaactttaagc  13647900  Previous    Next  AGI:  At2g32060.1    Description:  40S ribosomal protein S12 (RPS12C). Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.2); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to unknown [Populus trichocarpa] (GB:ABK93056.1); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); contains InterPro domain Ribosomal protein S12e; (InterPro:IPR000530) Range:  from: 13646093    to: 13647393    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g32070.1    Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G80780.2); similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G80780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45475.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 13647745    to: 13649030    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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