Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------ANAC55(2)                                         <---------REM1(2)                                  ------>NtERF2                               --------->YAB1         --------->ANAC55(2)                --------->ZAT18                             --------->ANAC58       --------->CCA1(2)                    --------->ZAT14                          ------>ZmHOX2a(1)        --------->ARR14(2)                    <---------ZAT18                         --------->TOE2(3)  --------->ANAC46                             <---------ZAT14                      <---------ARR14(2) --------->ZAT14                                --------->ALFIN1            <----------DOF2  --------->ANAC58      <---------ARR14(2)         <---------At4g35610    <----------DOF2   --------->ARR14(2) <---------ZAT14           <XXXXXXXXXXXXXXXXXXXXMIR1886.2   -   cttcttctttgtgtcttttactcaaatcctcaagcatagagtctacactcaccgatacgcgtctagatttcatagatttcatctcatcaagtgcagccat  13645300                                                                    <---------ANAC58                                                                ------>ZmHOX2a(1)                                                            <-----------HVH21                                                          --------->DEAR3(2)                                                         ------>NtERF2                                                        --------->ANAC46                                                        <---------ALFIN1                                                   <---------ARR14(2)             ------>ZmHOX2a(1)                                         --------->ARR11(3) --------->ORA47(1) ------>ZmHOX2a(1)           <----------DOF2               <---------ARR11(3)--------->DEAR3(1) <---------ALFIN1    ------->TEIL          <---------ARR11(3)       --------->ARR14(2)       ------>ZmHOX2a(1)     ---    -------->P            --------->ARR11(3)      ------>ZmHOX2a(1) <---------ANAC58        --------- -------->TOE2(3)     ---------->DOF2---------->DOF2   --------->MYB46(3)  <---------ALFIN1<---------YAB1   tacatcaacctctcttttcgaaaccaaagttctcttctctaaagaactcatcctatccccaccgtcctcggcttgctcctcctcctcgtgttgatcataa  13645400                                                                     <---------ALFIN1                                                                   ----------->RAV1(1)             <---------GLK1(2)                            <---------ZAT2         ----------->RAV1(2)                              <---------At4g35610--------->ZAT18         <-----------------AGL1                           --------->At4g35610<---------ZAT18         <---------At4g35610                              --------->ZAT2     --------->ZAT14 ------>ANAC46         <---------MYB59                <---------ARR11(3)     <---------ZAT14 -------- >YAB1  ------->TEIL  --------->REM1(1)   <------ZmHOX2a(2)  <---------DEAR3(1)      ----------->GT1   acacaagttgcacctgattcggctacataactcgaattctttggatcagtcttcaatatcagctcggtgcaacacttactgcacttgaagtaaaacctat  13645500                                                                                                  ---                                                                                                  ---                                                                     <---------ANAC55(2)          ---                                         --------->ANAC58            ----------->GT1              ---                                         --------->ANAC46       <---------ETT(1)                  ---                                         --------->ANAC58       >>>>>>>>>>AtTINY2                 <--                                        <---------LBD16         ----------->HVH21              <-----                              <---------ANAC58                ------>MYB46(1)                  ------                              <---------ANAC55(1)             ------>MYB83          <---------REM1(1)                              <---------ANAC58             --------->HSFC1(2)       --------->ALFIN1                <------MYB83  <---------ANAC55(2)          <---------HSFB2a(1)      <-----------RAV1(1)                <------MYB46(1)       <---------REM1(2)    <---------HSFC1(2)   <-----------RAV1(2)       ------>ZmHOX2a(2)      --------->ANAC55(2)          --------->HSFB2a(1)  ================RAV ->TOE2(2)     --------->MYB59<---------ANAC46        --------->MYB59--------->ANAC55(2) <---------AtLEC2   ggattttgatccctaagtaggtttctccgattacgttttcttcacggcaattgattttggtaccttccgacatgtaattcccacaggtgttgcatcgaat  13645600                    --------->HSFC1(2)                    <---------HSFB2a(1)                          <---------LBD16            <---------MYB52(2)                             <---------At4g35610         --------->TOE1(2)                                --------->ARR14(2)        --------->MYB46(3)                                --------->GLK1(2)        <---------HSFC1(2)                           <---------LBD16        --------->HSFB2a(1)                          --------->LBD16           <------MYB83        --------->HSFC1(2)<----------DOF2           <---------TOE2(1)          <------MYB46(1)        <---------HSFB2a(1)  <---------At4g35610    <---------TOE1(1)          <---------ANAC46 --------->MYB52(1) <---------HSFC1(2)             ------>ZmHOX2a(2)          --------->MYB111(2) ------>ANAC58      --------->HSFB2a(1)           =============HOX2a_HOX2a    --------->MYB46(2) ------>ANAC55(1)  --------->ARR14(2)            <---------ARR14(2)           --------->MYB55(2) ------>ANAC58     <---------ARR14(2)            --------->ARR14(2)           <---------MYB46(3) ------>ANAC55(2)  --------->GLK1(2)         <---------LBD16  --------->At4g35610 <---------MYB46(3) ------>ANAC46     ------->TEIL  <---------GLK1(2)<------ZmHOX2a(2)   <------ZmHOX2a(2) -------ANAC55(2)  <-----------ARR10   <---------TOE2(2)  <---------ARR14(2)  --------->MYB111(1) ----ARR14(2)      <---------ARR11(1)  <---------TOE2(3)<------ZmHOX2a(1)     <---------AtMYB61   --- --->ARR14(2)     <---------ARR14(1)   <---------TOE1(2)=====================HOX2a_HOX2a          ---   acgtaatggaaccatcgaacgaatcttcctttgctgattcttaggttttcggatccgaggaatctgcttcggatcaaagtttggtggatagtatttgttc  13645700                         ---------->DOF2                       --------->ANAC58                    --------->LBD16                   --------->ANAC58             --------->MYB46(3)             <---------MYB55(2)            --------->ANAC46       <----------DOF2 --------->ANAC58  <----------DOF2  --------->ANAC46                                                 --------->At4g35610 <---------DAG2    --------->ANAC58                                     ------------>CBF ------>ANAC58    <---------LBD16                          <---------ATHB12       <-----------RAV1(2) ------>ANAC58 <-----------HVH21          --------->AHL20(2)--------->YAB1      ----------->RAV1(1)   aagccttttctttcacccatcgcgcaagaaagaacaactagaaatcaaataagaagccctaatcaaaacccaaaaacaatcccaccagatgagagacccg  13645800                --------->AHL20(2)                <-----------TBP              <---------RVE1(1)             <---------ARR11(3)             --------->ARR11(3)                                  --------->MYB52(1)             <---------GLK1(2)                                  <---------ATHB51       ----------->HVH21                                        <---------AHL20(2)     <---------TGA1a                                        --------->AHL20(2)        --------->ARR14(2)     --------->O2                                       ---------->DOF2      --------->WOX13(1)     --------->TGA1a                                   ------->GAMYB       ------------>CBF     --------->ANAC55(2)<-------GAMYB                 <---------MYB52(2) --------->YAB1        <-----     ===========================MYC_MYB               --------->ANAC58  --------->ICU4<---------ARR14(2)     <---------O2<---------YAB1     <-------TEIL      --------->ANAC58 <---------KAN4(2)  ------>ZmHOX2a(1)   aatgctcaagtgacagatttttatagggttgagagaggttcttaatttctatggcaacgaaagaaaataatggaatgatcaatctgtagttcctctctta  13645900                                         <---------MYB46(3)                                         <------MYB83                            --------->ARR11(3)                                         <------MYB46(1)                        <------MYB46(1)                                      <------------CBF                         --------->MYB59                                     --------->ATHB12                   <------ZmHOX2a(1)                         <-----------GT1 ----------->GT1             --------->HSFB2a(2)                         ---------->ID1<---------WOX13(1)            <---------HSFB2a(2)                     <----------DOF2<---------YAB1                   ------>ZmHOX2a(1)                 <----------DOF2 <-----------GT1                    --------->TOE1(2)             <----------DOF2 <---------DAG2                         --------->TOE2(2) ------TBP<---------MYB52(1) <----------DOF2 ------------>CBF <---------AHL20(2)<------MYB83   tatagataacccgttctttctttctttttcccttttttctgattggttacaatttctaaactatttttttcctaggagaattaggtcttgctacaggtct  13646000                                                                                                 ----                                                                                                 ----       <------MYB46(1)                                                                           ----       <------MYB83                                                  <---------AHL20(2)        ------    <---------ANAC58                                                --------->AHL20(2)       --------    <---------ANAC58                                              --------------->AGL15      --------   --------->ZAT2<---------ANAC46                  --------->LBD16<---------------AGL15  ----------->GT1   <---------ZAT2<---------ANAC55(2)   ---------->ID1           <---------YAB1        <---------ANAC46   gtcttagcttggttttgttatgtataccaagaagtcaatttgttttttttttccgaaattgaaattttcatttaatggaagtagaactacgtggtaagaa  13646100                                   <---------MYB59 ----->ANAC58               ---------->DOF2 ------->GT1           --------->MYB52(1) ----->ANAC58         --------->ZAT18------>MYB46(1)                                <---------ZAT18 ---->DOF2            <---------ZAT14------>MYB83                                   --------->ZAT18 ->ANAC58           --------->At4g35610              <----------DOF2        --------->ANAC58 ->ANAC58   --------->TOE2(3)    ------->TEIL--------->TOE2(3)              --------->ANAC58       <-   agcaaaatataaaaccttgatgagcgaactgaaagaacctacataaacatcaaaactttcatgttccaaacaaatctcaagacatgtccactactgagta  13646200  Previous    Next  AGI:  At2g32050.1    Description:  cell cycle control protein-related. similar to cell cycle control protein-related [Arabidopsis thaliana] (TAIR:AT3G43250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17041.1); similar to unknown [Populus trichocarpa] (GB:ABK95462.1); contains InterPro domain Protein of unknown function DUF572 (InterPro:IPR007590) Range:  from: 13644956    to: 13645720    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g32060.1    Description:  40S ribosomal protein S12 (RPS12C). Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.2); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to unknown [Populus trichocarpa] (GB:ABK93056.1); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); contains InterPro domain Ribosomal protein S12e; (InterPro:IPR000530) Range:  from: 13646093    to: 13647393    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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