Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      ------>MYB46(1)               <-----------GT1                                                    --------->MYB52(2)           --------->At5g28300                   --------->AHL20(2)               ----------->GT1           <-------GAMYB                         --------->AHL20(1)             <---------MYB52(1)          ----------->GT1                        <---------AHL20(2)         <---------ANAC46       ------------>MYB.PH3(1)                  --------->AHL20(2)          <---------ANAC58      <---------ARR14(2)                        <---------AHL20(2)          <---------ANAC58       --      --------->ARR14(2)                     --------->AHL20(2)           ------>NtERF2     --------- ----------->GT1    ------>MYB83  <---------AHL20(2)               --------->ATHB12    <---------YAB1   acattgtaaatacggttaaaccaaatcgaaatagaatttatcacgaataaaaaaattagacgagattgctcattggtgccttgttagttaaaattgatta  13622400                                           --------->AHL20(1)                                        <---------AHL20(2)                                      --------->AHL20(2)                                      <---------AHL20(2)                                    --------->AHL20(2)                                    <---------AHL20(2)                                  <---------AHL20(2)                                  --------->AHL20(2)                                --------->AHL20(2)                                <---------AHL20(2)                              --------->AHL20(2)                              <---------AHL20(2)                            <---------AHL20(2)                          <---------AHL20(2)                          --------->AHL20(2)                        --------->AHL20(2) --------->ARR11(3)     --------->AHL20(2)--------->AHL20(1)  <---------ARR11(3)                  --------------------->WRI1     <---------AHL20(2)<---------AHL20(1) <---------AHL20(2)                  --------->YAB1 ------->ANAC46       --------->AHL20(2)--------->AHL20(2)                 <----------DOF2 >ATHB12 <-----------RAV1(1)--------->AHL20(2)                          <-----------GT1   --------->YAB1   cacataattttttgttggcccaaaatatatatatatatatatatatatattcaaaacaagtagctatatgttttttactttcatagtgagaatcacaaat  13622500                                                --------->ANAC46                                               <---------LBD16                                             ------->TEIL                                             <-------TEIL                                             --------->SPL7                                           <---------SPL7                                          <---------ANAC58                                          <---------ANAC55(2)                                <------ZmHOX2a(2)                    <------MYB83                               --------->ARR14(2)                    <------MYB46(1)                               <---------ARR14(2)           <------MYB46(1)                               --------->ARR11(3)           <---------MYB46(3)                       ----------->HVH21  <---------ANAC58  <------MYB83                     <---------At4g35610 --------------->AtSPL3  --------->ARR14(2)                     --------->At4g35610<-----------GT1    <---------AtMYB61                        <                 --------->ALFIN1------>ZmHOX2a(2)      <-----------RAV1(1)                    <-----          ---------->DOF2  ---------->DOF2--------->ANAC55(2)    <---------ARR14(2)            ------    ----------->GT1 <---------ANAC46  <----------DOF2  --------->ARR11(3)                      <-----   ctaagaggcttaaaaagaggtggagttgacaaagatcgggttttacgtacgcgcagagatgttggtggatttggttaaccggtgcaaaactttgaacagc  13622600                                                               <---------TGA1a                                                               --------->O2                                                               <---------ANAC58                                                               <---------ANAC58                                                               <---------O2                                                               <---------ANAC46                                                               ================================bZIP_DOF                                                       <---------DEAR3(2)                                                      --------->DEAR3(1)                                                   ======================MYC_MYB                                                   --------->DEAR3(1)                                                   ------->GAMYB               --------->YAB1                     <------------AtMYB77               --------->ATHB51                   --------->DEAR3(2)         <---------ZAT14               <---------ICU4                     --------->ATERF1(1)        --------->ZAT18              <---------ATHB12                    --------->MYB46(3) <---------WRKY12         <-----------HVH21                        =======================MYC_MYB        <---------ZAT6                            <---------ABI4(2)  <---------WRKY38(1)    --------->ZAT14              <-----------RAV1(1)--------->MYB52(1)       --------->ZAT14    <------NtERF2                ======================RAV --------->HSFB2a(2)    --------->At4g35610    --------->LBD16   <---------HSFB2a(2)     --------->ETT(2)    <---------ZAT14      <---------LBD16     --------->HSFB2a(2) --------->ALFIN1    <---------At4g35610<---------ARR14(2)    --------->LBD16   <---------bZIP60(2) --------->At4g35610   --------->ARR14(2)   <---------LBD16<-----------RAV1(2) --------->ATERF1(1)   --------->GLK1(2)    --------->LBD16<---------HSFB2a(2) ---------ATERF1(1)  <---------MYB46(3)    ----------->RAV1(2) --------->TGA1a <---------At4g35610 ----LBD16  --------->WOX13(1) ==========================================bZIP_DOF   <----------DOF2 --->At4g35610<---------ATHB51 <----------DOF2  <---------ARR14(2)   <---------ETT(2)             --- ----At4g35610--------->ICU4<---------MYB52(1)  --------->ARR14(2)   <---------DEAR3(1)          <---   ggaggctgcagtgtcaattatggaggttccggtctttgttgtctcccctggaaccgccggtccagacgtggtcgacgagtgaactgctttctccattttc  13622700                                                                                                    -                                                                                                    <      <--------ATHB1                                                                               --      --------->ATHB12                                                                             <-     --------->ICU4                                                     <------ZmHOX2a(2)          --     <---------ATHB12                         --------->MYB52(1)       <---------ARR11(3)          -- <---------ATHB12                      --------->ANAC46                --------->ARR11(3)        <--- --->ZmHOX2a(1)                        --------->ANAC58              *TSS                        ---- ------MYB59       ------>ZmHOX2a(1)   --------->ANAC58     ---------->DOF2--------->AtLEC2    <-----   ctaatcaatgatttgctcttcctcttcaaaaacttttaaacaagcaaaaaacagagtaattgcaaagagaatagatcatgcattcaactatgttgttatg  13622800                                    <-------MYC2                                    ------->MYC2                                    <-------MYC3                                    ------->MYC3                                   --------->TGA1a                                   <---------O2                                   --------->ANAC58                                   --------->O2                                   --------->ANAC58                                   --------->ANAC46                                   <---------ANAC55(2)                                   --------->ANAC55(1)                                   --------->ANAC55(2)                                   <---------TGA1a                                   --------->bZIP60(2)                                   ========================bZIP_DOF             <------------CBF      ========================bZIP_DOF    =========================================bZIP_DOF    ---------->DOF2           ----------->HVH21    ==================================bZIP_DOF -------------->AGL15        <-----------HVH21 ---------------AGL15       <---------ANAC55(2) --------------->AGL2       <---------O2 ----------------AGL3       ===============================bZIP_DOF --------------->AGL3       --------->ANAC55(2) ---->ZmHOX2a(2)            --------->TGA1a     ---------->DOF2 ------ARR11(3)        ----------->HVH21  --------->ANAC58                    <----------DOF2 ----->ARR11(3)      <---------AtLEC2----------->HVH21                   <----------DOF2 ----YAB1  --------->ICU4   --------->O2  --------->ANAC58           <-----------GT1   atctaaaaaaggaaagattgtatgcatgacatgtgacacgtgacaagcccaaaagattacacttgggttttttagcttttctttagggcataaacaagaa  13622900                                                                                                   --                                                                                                   --                         <---------ZAT2                                                 <---------ANAC58                         --------->At4g35610                                            <---------ANAC58                    <---------LBD16                                        <---------YAB1      ------                   <---------ANAC46        ------->TEIL               ---------->DOF2   <---------ANAC46       ----------->GT1   <---------At4g35610   ----------->GT1---------->DOF2   <-----------GT1------   ttagtcaaatgtttaaaagttttggggagctgttttagataagtgtatgtggaaaaaatcgaagtaaagctaaaaagattataaactgttccttgaaacg  13623000                                          --------->ANAC58                                          --------->ANAC58                                        --------->MYB52(1)                                      <---------MYB52(2)                                     --------->ANAC58                                     --------->ANAC58 ------->ANAC58                      --------->ANAC46 ------->ANAC58                --------->CCA1(2) --->ANAC58                 <---------ATHB12               ---------->DOF2 --->ANAC58 <---------GLK1(2)--------->YAB1  ---------->DOF2               ---------->DOF2   caggcagtatttcagaattttgaatttccaatgatatgcaagtaacgcaaagacataaacacaaagtttagagtttcaaaagtctctgaaactcattttt  13623100                                                                                 <------ZmHOX2a(1)                                                                             ---------->DOF2       <---------ARR14(2)                                             ------>NtERF2       <---------GLK1(2)              ------>NtERF2                  --------->ANAC58       --------->ARR11(3)       ------>NtERF2                        <---------ALFIN1       --------->ARR14(2)    <---------At4g35610                     --------->ANAC46    <---------TOE1(2) <---------ETT(2)            ------>ZmHOX2a(1)                       --------->ANAC58    <---------TOE2(2) --------->ETT(2)            --------->At4g35610                   <---------ALFIN1   ------>MYB83 ----------->HVH21       <---------ALFIN1         ---------->ID1 ------>ZmHOX2a(1)    ------>MYB46(1)   gggtcgacagattttgagcctcttctccctcctctgcctcggcctctccctcgtccccttccccttcctccacgcctcacaaaggacctcccatgtttca  13623200                             XXXXXXXXXXXXXXXXXXXX>MIR397B                      <---------ANAC58                      <-----------HVH21                         <---------HSFB2a(2)              --------->ANAC58                             <---------MYB52(1)  <---------ANAC58     -              --------->ANAC58                     --------->ALFIN1  <------ZmHOX2a(1)             <- --------->HSFB2a(2) --------->ANAC46  --------->TOE2(3)<------NtERF2================================HOX2a_HOX2a <---------HSFB2a(2) --------->bZIP60(2)         --------->ALFIN1--------->LBD16              ------>ZmHOX2a(2)   cttctacaagtgagagaagcaactcgtcacatagaacacatccttgatgcagagtggctccgttctccagaggagtagttttcttgttgaaatcgatctc  13623300  Previous    Next  AGI:  At2g31985.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45247.1); contains InterPro domain Protein of unknown function DUF1264 (InterPro:IPR010686) Range:  from: 13621005    to: 13622769    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g32000.1    Description:  DNA topoisomerase family protein. similar to DNA topoisomerase III alpha, putative [Arabidopsis thaliana] (TAIR:AT5G63920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45256.1); similar to hypothetical protein OsI_030865 [Oryza sativa (indica cultivar-group)] (GB:EAZ09633.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ49709.1); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain Toprim subdomain; (InterPro:IPR006154); contains InterPro domain DNA topoisomerase, type IA, central region, subdomain 1; (InterPro:IPR013824); contains InterP Range:  from: 13622977    to: 13628718    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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