Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ---------->ID1                      --------->At4g35610               <---------ANAC58                     --------->ALFIN1                   <---------ANAC58        <---------ANAC58        ---------->DOF2       --------->ARR11(3)--------->CCA1(2)       -----        <---------ANAC58     >>>>>>>>>TBF1    ---------->DOF2  --------->YAB1                  ------   gaagaagagagcgtagccttgaagtgctgaagaagaaagatgagaagtcaaagagagagcttgtctcataagagagatggaatcagagagagtttgtccc  13552200                                                                                                -----               <---------ANAC46                                                               -------               <---------bZIP60(2)                                                           --------               <---------ANAC58                                                            --------->DOF5.7(2)            ----------->HVH21                                                             <----------DOF2         <---------DEAR3(1)                                                     --------->ARR14(2)        <---------At4g35610                                                     <---------ARR14(2)        <---------ZAT2                                                          --------->GLK1(2)        --------->At4g35610<-----------HVH21            --------->ALFIN1        <---------ARR11(1)  -        --------->ZAT2  <---------MYB52(1)  --------->AtMYB61       --------->ANAC58   ------->TEIL - ---->LBD16--------->At5g28300        --------->HSFB2a(2)           --------->ANAC58  <---------CCA1(2) --->HSFB2a(2) <---------ANAC58       <---------HSFB2a(2)<-------GAMYB          ------->TEIL <-------   gaatagactcggctgtgacttggtccattggtcatagcttctaaaacctccaccaagtgtgttgatggccaagacagagacgaatcttgaatctttaacg  13552300                                  <-----------GT1                              <----------DOF2                        ------>ZmHOX2a(2)     ----------->GT1   <------ZmHOX2a(2)    --------->MYB59   <---------ARR14(3)    <---------TOE2(3) --------->ARR14(3) -->GAMYB             <---------ARR11(3) -->RAP2.6(3)         --------->ARR14(2) ->MYB52(1)           <---------ARR14(2)                             <------------CBF -------->ANAC58      --------->ARR11(3)               <---------ANAC58          <----------DOF2 -------->ANAC58      <-----------ARR10       --------->ZAT14      <---------TOE2(3) --DOF5.7(2)          --------->AGP1       *TSS        <---------ANAC58   <---------TOE1(2)  --------   gcaagtaaggtaaaattgtatcaagatcttctcttttctccattgctctgttctcttgcttctcaagttgagattgcaggtttctttctgaagaatgaaa  13552400                          ------->GAMYB                         <---------MYB52(2)                       --------->MYB52(1)                       ------>MYB46(1)                       ------>MYB83--------->WRKY12                      --------->MYB55(1)                     <---------MYB52(2)                     <---------MYB46(2)                     <---------MYB59                                                   <---------ANAC58                     <---------MYB111(1)                                               <---------ANAC46                    <---------ANAC55(2)                                                <---------ANAC58          --------->CCA1(2)        --------->WRKY38(1)                           <---------YAB1   ---          <-----------TBP--------->MYB46(3)                                   <---------AHL20(2)  ---         --------->ARR11(3)      --------->At4g35610                         --------->YAB1    ======         <---------ARR11(3)      <---------At4g35610<---------CCA1(2)   <---------GLK1(2)      <----- ->AHL20(2)         --------->ANAC55(2)<----------DOF2       <---------ZAT14<---------YAB1    -------   tacaaaacatagatatatagatacctaacgaacacagttgactttcatgttcttatatctgactatagagattagattattatatcattccttggagatc  13552500                                                                 --------->AHL20(2)                                                                 --------->ATHB51                                                                --------->ICU4           --------->ICU4                                       <---------ATHB12    <-------MYC3                                            ------------>CBF    ------->MYC3                                            <---------ATHB12   <---------O2                                           --------->WOX13(1) <---------ARR11(3)   <---------ANAC46                                  <---------YAB1          --------->ARR11(3) ------>ANAC58 --------->KAN4(1)               --------->MYB46(3)-------->ATHB1 ------>ANAC58<---------YAB1              --------->At4g35610 --------->WOX13(1) ==================HOX2a_HOX2a            <---------At4g35610--------->AHL20(2) -ZmHOX2a(2)  <---------KAN4(2)           --------->ZAT2<---------WOX13(1)<------ZmHOX2a(1) -->ARR11(3)<------ZmHOX2a(1)  <---------CCA1(2)<---------ALFIN1<---------ATHB51        <---------At4g35610   aagaaacgtggaaaggattattcagacaaactcatgtcttctacagctcaccactctgattaatcaattattcaaaggatatattcggtctgctatttga  13552600                                          <---------AHL20(2)                                         --------->AHL20(1)                             <---------DAG2                                                        <-                          *TSS           <---------AHL20(2)                                        --                 <------ZmHOX2a(1)       --------->AHL20(2)                                       <--                --------->ICU4        --------->ATHB51                                        <------                ----------->GT1  <---------YAB1                                              <-------             ---------->DOF2 <----------DOF2<---------TOE2(3)                                --------       --------->YAB1---------->DOF2  --------->AHL20(2)                               --------->YAB1      <---------ATHB12<---------TOE2(3)  <---------AHL20(1)    ----------->RAV1(1)    --------->ICU4   aatttgaaatcataagaaaggattaaagaagctttatgaataatttaatgtaagacagtaagagacaacaaaatggattggacatagaatgatggtgcgc  13552700       --------->ARR14(2)       <---------ARR14(2)     --------->LBD16   ----------------->AGL1   <---------LBD16                                                                              -----  <-----------GT1                                                                             ------- <-----------GT1                                                                              <------ --------ARR14(2) --------->At4g35610                                                      ---------- ------->ARR14(2) --------->ZAT2                                                           --------->ANAC58 --------TaMYB80  <---------ZAT2                             <---------GLK1(2)           ---------->DOF2 ---ANAC46--------->HSFB2a(2)                  --------->CCA1(2)                    --------->ARR14(2) --ZAT18  >>>>>>>ZML2<---------LBD16          <---------ARR11(3)       --------->At4g35610 --------->ANAC58 ->ZAT18  <---------HSFB2a(2)    <---------ANAC55(2)   <---------MYB52(1)           <---------ARR14(2)   atatttccggttctagtaccagctctggagagattacatgagggcctagatatatcccttatggattctaaggggctgaaacagaagaaccgaaaggaac  13552800                                                                                        <---------ANAC58                                                                                        <---------ANAC55(2)                               --------->ANAC58                                         <---------ANAC46     --------->ANAC58          --------->ANAC58                                    --------->ANAC58     --------->ANAC58    -------->HAHB4                    <---------ANAC58        ----------->GT1  --------->ARR14(2)     --------->ATHB12                  <---------ANAC46        --------->ANAC58  <---------ARR14(2)     <---------ICU4                    <---------ANAC58<---------ANAC46 ---->DEAR3(2)          <---------YAB1                  <----------DOF2 --------->bZIP60(2)  -------- -->ARR14(2)            --------->ICU4           <-------GAMYB        <---------ALFIN1  <---------ANAC58 ---ARR14(2)     <---------ATHB12           <-----------RAV1(1) --------------->AtSPL8  --------->ANAC55(2) -------------->ANAC81--------->YAB1--------->AtLEC2<-----------GT1   ----------->RAV1(1)    <-------   cgaagaaacgcccagtccaatctataatgatggaagccattcaaaaatgtgggttaacctttcttgtatgtgccacatcgtggacaagttacttgagctt  13552900                                   <---------ANAC58     <------ZmHOX2a(1) <---------ALFIN1                         --------->ATERF1(1)             -----  <-----------RAV1(2) --------->ZAT18                          <---------ATERF1(1)              <----  <---------LBD16     <-------TEIL --------->ANAC55(2)    --------->DAG2                        ----- ->At4g35610          <---------ZAT18                    --------->DAG2        <---------YAB1  <----- --At4g35610 ---------->TaMYB80    <---------ANAC58     ---------->DOF2   --------->ZAT6  <----------   aatctcaggagatggaatatgaggtccacttccatttacgtcttggcttcaagatggaaaaaggtcgtctccgataacactctaattgaaggccagagga  13553000                                                                 <---------At4g35610                                                                 <---------ZAT2                                                                 --------->ZAT2                                                               <---------ALFIN1                                                           <---------At4g35610                                                           <---------ZAT2                                                           --------->ZAT2                                                           --------->At4g35610                                                        ------>ZmHOX2a(2)                                                        ===================================HOX2a_HOX2a                                                       ====================================HOX2a_HOX2a                                                  <---------LBD16--------->At4g35610           <-----                                                 ==============HOX2a_HOX2a                     ------  <---------ARR14(2)             --------->ARR11(3)    <------ZmHOX2a(2)                       ------ ---->ARR14(2)             --------->ANAC58      ------>ZmHOX2a(1)   <---------ALFIN1          <----- -----ARR14(2)             --------->ANAC58      =============HOX2a_HOX2a                    <------- ---->ARR11(1)  --------->ANAC46 <---------ARR11(3)   <---------ARR14(2)             ----------->RAV1(2) -ZmHOX2a(1)  <---------ALFIN1   <---------AHL20(1)   --------->ARR14(2)            ------>ZmHOX2a(1) -RAV1(2)  ------>ZmHOX2a(1)     --------->AHL20(1)--------->HSFB2a(2)         <---------GLK1(1)   <-   ttcggctctggtccttccactccctagccaagctatatattgctcttgttcctctggatccagctccagctccaactctggctatccttctggctccagc  13553100  Previous    Next  AGI:  At2g31860.1    Description:  pseudogene, poly (ADP-ribose) glycohydrolase, putative, contains Pfam domain, PF05028: poly (ADP-ribose) glycohydrolase (PARG); blastp match of 59% identity and 1.4e-19 P-value to EGAD|134505|143482 114E2.c protein {Drosophila melanogaster} Range:  from: 13549560    to: 13552343    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g31862.1    Description:  similar to DNA binding [Arabidopsis thaliana] (TAIR:AT2G18810.1); contains InterPro domain Protein of unknown function DUF313 (InterPro:IPR005508) Range:  from: 13552626    to: 13553541    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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