Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <----------DOF2                                           <------NtERF2                                          <---------RAP2.6(3)                --------->CCA1(2)         ------>NtERF2               <---------ARR14(2)         --------->LBD16               <---------ARR11(3)        <---------RAP2.6(2)        <---------LBD16                  --------->ATERF1(2)    <------ZmHOX2a(1)         <------ZmHOX2a(1)<-----------RAV1(1)        <---------ARR14(2)  --------->MYB59   ----------->RAV1(2)  <---------ATERF1(2)              --------->ARR14(2) -------ZAT6   --------->ARR11(3)       <---------LBD16         --------->ANAC58 ------>ALFIN1 --------->ARR14(2)       --------->RAP2.6(3)     --------->ANAC58       --------->YAB1   gtgttaggacttcggaagatatacctggctgaggaacacaatgccggctttgttggggactaagacacgaagaccggttttggttccattgatgagattg  13551900                                                  --------->ANAC58                                        --------->At4g35610                                  --------->GLK1(2)                                 <---------GLK1(1)--------->ANAC58                      <---------GLK1(2)                                 <---------GLK1(2)--------->ANAC46    ----------->GT1<---------WOX13(1)            <---------ZAT6 --------->CCA1(2) <----------ID1 ----------->GT1<-----------GT1        <--   tctgaatttagatagtgtgattccaagagagatgggaatctcagaagaagacaagccattgcaggtaaaaactcgttaaaccatctgcttgattcttctt  13552000               ------>MYB83             <---------MYB111(1)             --------->MYB46(3)             <---------MYB46(2)             --------->AtMYB61            --------->ANAC58                            ---------->DOF2            --------->ANAC58                        --------->ANAC58            --------->ANAC46                        --------->ANAC58          --------->ANAC46                --------->ZAT14           <---------AHL20(2)          --------->REM1(1)               <---------ZAT14           --------->AHL20(1)         --------->ZAT14                  <---------ZAT18   <------ZmHOX2a(1)   <---------AHL20(2) -------ETT(2) ------>MYB46(1)<-----------GT1     --------->MYB52(1)--------->AHL20(2)  <-----------GT1   tcgacattctctacaccaaaccaatacatttttcactgaatcagtccacaaaaaacggaaaaggatgaaataaaatgttgattttttttgttacctcgtc  13552100                                                            ---------->ID1                      --------->At4g35610               <---------ANAC58                     --------->ALFIN1                   <---------ANAC58        <---------ANAC58        ---------->DOF2       --------->ARR11(3)--------->CCA1(2)       -----        <---------ANAC58     >>>>>>>>>TBF1    ---------->DOF2  --------->YAB1                  ------   gaagaagagagcgtagccttgaagtgctgaagaagaaagatgagaagtcaaagagagagcttgtctcataagagagatggaatcagagagagtttgtccc  13552200                                                                                                -----               <---------ANAC58                                                               -------               <---------bZIP60(2)                                                           --------               <---------ANAC58                                                            --------->DOF5.7(2)            ----------->HVH21                                                             <----------DOF2         <---------DEAR3(1)                                                     --------->GLK1(2)        --------->ZAT2                                                          <---------ARR14(2)        <---------At4g35610                                                     <---------ARR11(1)        <---------ZAT2  <---------MYB52(1)              --------->ALFIN1        ------->TEIL <-------        --------->At4g35610<-----------HVH21--------->AtMYB61       --------->ANAC58   ------->TEIL - ---->LBD16--------->At5g28300        --------->HSFB2a(2)           --------->ANAC58  <---------CCA1(2) --->HSFB2a(2) <---------ANAC46       <---------HSFB2a(2)<-------GAMYB          --------->ARR14(2)  -   gaatagactcggctgtgacttggtccattggtcatagcttctaaaacctccaccaagtgtgttgatggccaagacagagacgaatcttgaatctttaacg  13552300                                  <-----------GT1                              <----------DOF2                        ------>ZmHOX2a(2)     ----------->GT1   <------ZmHOX2a(2)    <---------TOE2(3) --------->ARR11(3)    --------->MYB59   --------->ARR14(3) -->GAMYB             --------->AGP1 -->RAP2.6(3)         <-----------ARR10 ->MYB52(1)           <---------ARR14(3)                             <------------CBF --DOF5.7(2)          <---------ARR14(2)               <---------ANAC58          <----------DOF2 -------->ANAC58      <---------ARR11(3)      --------->ZAT14      <---------TOE2(3) -------->ANAC58      --------->ARR14(2)   *TSS        <---------ANAC58   <---------TOE1(2)  --------   gcaagtaaggtaaaattgtatcaagatcttctcttttctccattgctctgttctcttgcttctcaagttgagattgcaggtttctttctgaagaatgaaa  13552400                          ------->GAMYB                         --------->MYB46(3)                       ------>MYB46(1)                       ------>MYB83--------->WRKY38(1)                       --------->MYB52(1)                      --------->MYB55(1)                     <---------MYB111(1)                     <---------MYB59                     <---------MYB46(2)                                                <---------ANAC58                     <---------MYB52(2)                                                <---------ANAC58                    <---------ANAC55(2)                                                <---------ANAC46          --------->CCA1(2)        --------->WRKY12                              <---------YAB1   ---          <-----------TBP<---------MYB52(2)                                   <---------AHL20(2)  ---         <---------ARR11(3)      <---------At4g35610                         --------->YAB1    ======         --------->ARR11(3)      --------->At4g35610<---------CCA1(2)   <---------GLK1(2)      <----- ->AHL20(2)         --------->ANAC55(2)<----------DOF2       <---------ZAT14<---------YAB1    -------   tacaaaacatagatatatagatacctaacgaacacagttgactttcatgttcttatatctgactatagagattagattattatatcattccttggagatc  13552500                                                                 -------->ATHB1                                                                 --------->AHL20(2)                                                                --------->ICU4           --------->ICU4                                       <---------ATHB51    <-------MYC3                                            ------------>CBF    ------->MYC3                                            <---------ATHB12   <---------ANAC46                                       --------->WOX13(1) <---------ARR11(3)   <---------O2                                      <---------YAB1          --------->ARR11(3) ------>ANAC58 --------->KAN4(1)               --------->MYB46(3)--------->ATHB51 ------>ANAC58<---------KAN4(2)           --------->At4g35610 --------->WOX13(1) ==================HOX2a_HOX2a            --------->ZAT2<---------WOX13(1)<------ZmHOX2a(1) -ZmHOX2a(2)  <---------YAB1              <---------At4g35610--------->AHL20(2) -->ARR11(3)<------ZmHOX2a(1)  <---------CCA1(2)<---------ALFIN1<---------ATHB12        <---------At4g35610   aagaaacgtggaaaggattattcagacaaactcatgtcttctacagctcaccactctgattaatcaattattcaaaggatatattcggtctgctatttga  13552600                                          <---------AHL20(2)                                         <---------AHL20(1)                             <----------DOF2                                                       --                          *TSS           --------->AHL20(1)                                        <-                 <------ZmHOX2a(1)       --------->AHL20(2)                                       <--                --------->ICU4        --------->AHL20(2)                                      <------                ----------->GT1  <---------YAB1                                              --------             ---------->DOF2 <---------DAG2 <---------TOE2(3)                                <-------       --------->YAB1---------->DOF2  --------->ATHB51                                 --------->YAB1      <---------ATHB12<---------TOE2(3)  <---------AHL20(2)    ----------->RAV1(1)    --------->ICU4   aatttgaaatcataagaaaggattaaagaagctttatgaataatttaatgtaagacagtaagagacaacaaaatggattggacatagaatgatggtgcgc  13552700       --------->ARR14(2)       <---------ARR14(2)     --------->LBD16   ----------------->AGL1   <---------LBD16                                                                              -----  <-----------GT1                                                                             <------ <-----------GT1                                                                              ------- ------->ARR14(2) <---------ZAT2                                                           ---------- --------ARR14(2) --------->ZAT2                                                           --------->ANAC58 --------TaMYB80  --------->At4g35610                        <---------GLK1(2)           ---------->DOF2 ---ANAC46<---------HSFB2a(2)                  --------->CCA1(2)                    <---------ARR14(2) ->ZAT18  --------->HSFB2a(2)    <---------ANAC55(2)   <---------MYB52(1)           --------->ARR14(2) --ZAT18  >>>>>>>ZML2<---------LBD16          <---------ARR11(3)       --------->At4g35610 --------->ANAC58   atatttccggttctagtaccagctctggagagattacatgagggcctagatatatcccttatggattctaaggggctgaaacagaagaaccgaaaggaac  13552800  Previous    Next  AGI:  At2g31860.1    Description:  pseudogene, poly (ADP-ribose) glycohydrolase, putative, contains Pfam domain, PF05028: poly (ADP-ribose) glycohydrolase (PARG); blastp match of 59% identity and 1.4e-19 P-value to EGAD|134505|143482 114E2.c protein {Drosophila melanogaster} Range:  from: 13549560    to: 13552343    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g31862.1    Description:  similar to DNA binding [Arabidopsis thaliana] (TAIR:AT2G18810.1); contains InterPro domain Protein of unknown function DUF313 (InterPro:IPR005508) Range:  from: 13552626    to: 13553541    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version