Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->bZIP60(1) ---------ANAC58 ---------ANAC58 ------->ZAT2 --------ZAT2 ---->LBD16 ---LBD16------>NtERF2 ->CCA1(2) ->ARR14(1) -ARR14(2)                                                                     <-----------GT1  ----- >ARR11(3)                                                               <---------AHL20(2)     <---- >ARR14(2)       --------->RAP2.6(2)                     *TSS      <---------ANAC58        ---------- >AGP1  --------->ANAC46        ---------->DOF2  --------->CCA1(2) <---------ANAC58   ---------->DOF2 >ARR10 <---------bZIP60(1) <---------ANAC46---------->DOF2        <---------ANAC46 <---------YAB1   gagcttgacgacgacacagtcgcaaacgtgaagtgaaagtgtaagtgaaagagacggatgtttttgtttgtgtgttttattttactcttatagcccaatt  13357100                                                          --------->YAB1                                                         --------->ICU4                                                         <---------YAB1                                                       --------->YAB1                                                    --------->YAB1                                                  ----------->RAV1(1)                                               --------->PCF5                                              <------NtERF2                                              --------->ATERF1(1)                                              ------>NtERF2                                             <---------ORA47(2)                                             <---------ATERF1(1)                                             ------>NtERF2<---------ICU4                                             <---------DEAR3(2)                                             <---------RAP2.3(1)                                            <---------ATERF1(2)                                            <---------DEAR3(1)                    ------>ZmHOX2a(2)                                            --------->ATERF1(2)                  <------ZmHOX2a(2)                                            --------->ATERF1(1)                  --------->CCA1(2)          <------ZmHOX2a(2)                 <---------RAP2.3(3)                 <---------ARR11(3)         <---------ARR11(3)                 <---------RAP2.3(2)                 --------->AGP1 ---->AHL20(2)           <---------ANAC58   <---------RAP2.6(2)         --------->AHL20(2)         -- -----AHL20(2)           <---------ANAC58  --------->ATERF1(1)--------->ANAC58  <---------AGP1  ----- -->CBF  --------->ARR11(3)                <---------ATERF1(1)--------->ANAC58  --------->ARR11(3) <-   ttttatgaccagatcattttctattttccttggccctgtcttaggggcggcccagcataataataagcaaaaaaaaaaataagatctaaattctgcatta  13357200                  --------->ATHB51               --------->YAB1               --------->ANAC46               --------->ANAC55(2)       --------->AHL20(2)     <---------ANAC55(2)                          --------->GLK1(2) ------->AHL20(2) --------->ATHB12                <---------ARR11(3)        <---------YAB1 ------>GT1   <-------TEIL <---------AHL20(2)    --------->RVE1(1)    <---------YAB1 --------AHL20(2)<---------YAB1            --------->AtLEC2    --------->TOE2(3)        ---------->DOF2   gttaaatacttaaatatacataattggatttaatcaaatccatccatgtaaaaatctgaactaaacctcactatgagtatgagtaacttataaagtcatt  13357300                                                                                            <--------                                 --------->TOE2(3)                                         <---------                               <---------TOE2(3)                                      --------->AHL20(1)                               <---------YAB1           <-----------GT1              <---------AHL20(2)                <---------ARR14(2)                  --------->AHL20(1)             --------->AHL20(2)                --------->ARR14(2)<---------YAB1    <---------AHL20(2)            <---------AHL20(1) <---------ARR11(3)----------------->AGL1           --------->AHL20(2)            --------->AHL20(1) <---------AHL20(1)----------------->AG            --------->AHL20(2)  <----------DOF2<---------AHL20(1)   ctatatattcagttttcgaatcccaaataagttaacattatagttttctcaaaattaattacactgtattagtcttttttctaatatatatattaacatt  13357400                                                      <------MYB83                                                      <------MYB46(1)                        <---------MYB59             <--------P                                     *TSS               --------->AHL20(2)                  <-------GAMYB                           <---------               <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      ------------       <---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               ----------->GT1  <- -TOE2(3)     --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              ---------->DOF2    -- --GT1 --------->AHL20(2)     <---------AHL20(2)  <---------MYB46(3)       <---------DEAR3(1)    ----   tcttagaaaataaatataaaattagaccgaattttttttttttttttttttttggttggagcgactaaatttctccatcggcgaaagaaaaaaaaaacaa  13357500                                                                 <----------DOF2                                                                <---------ANAC58            --------->DAG2                               <---------TOE2(2) -ID1      ---------->DOF2       <-----------HVH21       <---------TOE1(2) ------------>ANAC81            <---------ANAC58      <-----------GT1                            <--- ---------ID1                   <---------ANAC58   --------->ARR14(2)                       <-------- --------->GT1              --------->MYB46(3)     <---------ARR14(2)                    ------->TEIL ----->MYB52(1)    --------->HSFB2a(2)    ------>ZmHOX2a(1)     <---------ANAC58        <---------CCA1(2)   aacgaaaaaaaaaaaaagtttctcgattcaacaagcgtcccttcctccttggggattcacaggtttgcttcttcgtcgatttgattctttgaatcttttt  13357600          <---------TOE1(3)          <---------TOE2(3)    <---------TOE1(2)    <---------TOE2(2)   <---------STY1(1)                                                                   <-----------GT1   --------->STY1(1)                                                            --------->AHL20(2) --------GT1 --------->ARR14(2)                                ----------->RAV1(1)  <---------CCA1(2) --DOF2   --------->MYB59        <------ZmHOX2a(2)      <---------ZAT14<---------GLK1(2)   ttcccctaggtttaggtttcgctattgtttctacgatcgaaactaggtctctctattgtttactgcaacatttgattctcaatttcatatcaccgatttg  13357700                                    ------>ZmHOX2a(2)                                  --------->ARR14(2)                     --------->YAB1<------ZmHOX2a(2)                     --------->ATHB12     --------->ANAC58                    --------->ICU4<---------AGP1                    <---------YAB1<---------ARR14(2)                 <------ZmHOX2a(1)--------->AGP1                 ==========================HOX2a_HOX2a                 =========================HOX2a_HOX2a               --------->MYB59    <---------ARR11(3)             --------->ICU4       --------->ARR11(3)    <---------ZAT6        --------->LBD16          <---------CCA1(2)------->TEIL                            <---------MYB59       <---------LBD16           <---------At4g35610   <---------TOE1(3)                  --------->TOE2(3)       --------->LBD16        <-------TEIL--------->ANAC58                     <------MYB46(1)      <---------LBD16<---------ICU4--------->GLK1(1)   <---------TOE2(3)       <------MYB83 ---------      ----------->RAV1(2) <---------TOE2(3)    <---------ATHB12             <---------MYB52(1)   tgtttatcccctggaattaggaatgattagggttcagatctcgtaggcaatgaatttagggttagagaaatagcatctgtttggtttgtttacctaaaga  13357800                                                                                              <------      ---------->DOF2                                                --------->ICU4         <--------   --------->TOE2(3)                  <---------TOE2(3)              <---------YAB1      <---------MYB46(3)   --------->TOE1(3)      <---------YAB1<---------ARR11(3)  --------->ARR11(3)         <-------GAMYB ------->TEIL           <-----------GT1 --------->ARR11(3) <---------At4g35610        --------->MYB52(2) ->DOF2     <----------DOF2           <---------TOE1(3)<----------DOF2              <---------MYB52(1)   atgaaccctaaaggctttgttctgttttacgattttgtttaaggtcttagtttttatctttagctcttgtcattcttaagcatgttgttagttgttacta  13357900                                                               <---------YAB1                                                           --------->ARR14(2)     <----------DOF2                                       <---------ARR11(3)  <---------ARR11(3)              <---------DAG2           <---------ARR14(2)  --------->ARR11(3)        --------------->AtSPL8         <---------GLK1(2)   <---------At4g35610 ---YAB1                    --------->MYB59                --------->ARR11(3)  --------->At4g35610 ---GT1         <------------------------ANAC81  <----------DOF2 ---------->DOF2             --------   ttaagaacttttattctctgttcttgtattttggtaccttatgaaattagtcttttatgcagattttgaaagctaatcttcagctatgagcacagcaaca  13358000  Previous    Next  AGI:  At2g31300.1    Description:  ARPC1b (actin-related protein C1b); nucleotide binding. similar to ARPC1/ARPC1A (actin-related protein C1a), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G30910.2); similar to ARPC1/ARPC1A (actin-related protein C1a), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G30910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69944.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383) Range:  from: 13353199    to: 13357057    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g31305.1    Description:  similar to Protein phosphatase inhibitor [Medicago truncatula] (GB:ABN09808.1); contains InterPro domain Protein phosphatase inhibitor (InterPro:IPR011107) Range:  from: 13357499    to: 13358541    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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