Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->YAB1                         <---------ATHB51                 --------->KAN4(2)                                          --------->ANAC58                --------->HSFC1(2)                                          --------->ANAC58                <---------HSFC1(2)                                      --------->ZAT6                <---------HSFB2a(1)                                --------->YAB1                 ---                --------->HSFB2a(1)                             --------->YAB1                -------            ----------->GT1                               <---------ARR11(3)--------->ANAC46<--------   tataaaacattgactcgaaaattctcaattatagggatttagaagaaacttgattaccaagatgtataagaataacacaagtcaattcagaaaaactaac  13356700         ------>ZmHOX2a(1)      ------>ZmHOX2a(1)    ------>ZmHOX2a(2)   <------ZmHOX2a(2)   =============HOX2a_HOX2a  <---------ARR14(3)  <---------ARR14(2)  --------->ARR14(2)  <---------ARR11(3)  --------->ARR11(3)                  <---------LBD16  <---------GLK1(2)   --------------->AGL15  --------->ARR14(3)  <---------------AGL15 ------->DOF2        ----------------->AGL2      ---------->DOF2                                   <- -->MYB52(1)    <---------YAB1       --------->MYB52(1)      --------->YAB1                       --- -MYB52(2)    --------->YAB1 ----------->GT1 ------------------------>ANAC81 --------->ALFIN1    <---   taaagatcctcctcatttataattctaaaaacagaaaaacgacggaagagagaaagaagagaatcacaaaatcagagaggtgttagaaacatactggaga  13356800            --------->YAB1                                   --------->ATHB12           <---------ATHB12                                 <---------YAB1          --------->ANAC58                          --------->AtMYB61          --------->ANAC58                       --------->ANAC46   <------ZmHOX2a(1)            --------->At4g35610 <---------ALFIN1------>ZmHOX2a(2) -----ZmHOX2a(2)                <---------At4g35610--------->MYB46(3) ------>ARR11(3)        <---------WOX13(1)      --------->MYB46(3) <---------YAB1 ------GLK1(1)        --------->ATHB12      ------->TEIL    --------->ICU4                   --------   gatcaggactccaagcatggcaagtgattgactcagcgaaacgatgaacatccaccactgccatgagtgatccttgttgtcccaaatgtgttgtaatgaa  13356900                                                                                                    <                                                                                                    <                                                                                                   --                                                                                                   <-                                                   --------->At5g28300                          -----                                                  ----------->GT1                             <------                                                --------->SPL7                                ------>ZmHOX2a(2)                                               <---------SPL1(1)                             --------                                             <---------ANAC58                                --------                                             <---------ANAC58                <---------YAB1  <------ZmHOX2a(2)                                            <---------------AtSPL8         --------->YAB1   ---------                                            --------------->AtSPL3        --------->ICU4    ---------                                            <---------------AtSPL3        <---------YAB1    <--------                                           <------------------SPL14     --------->YAB1      ---------                                  <---------HSFB2a(2)                   <---------ICU4     --------->GLK1(1)                                  --------->HSFB2a(2)                   -------->HAHB4     <---------GLK1(1)    <----------DOF2           --------->GLK1(1)--------->SPL1(1)       --------->ICU4     ----------- ->ICU4                      <---------GLK1(2)<---------SPL7     ----------->GT1     --------->DEAR3(1)   gacagtcttttctctcaaattgacatctacagatttctaaaacggagtcgtacggtgaatagatggacagataattatgatgaaacgccgatgagatccg  13357000        --------->bZIP60(1) ---------ANAC58 ---------ANAC58 ------->ZAT2 --------ZAT2 ---->LBD16 ---LBD16------>NtERF2 ->CCA1(2) ->ARR14(1) >ARR11(3)                                                                     <-----------GT1  ----- >ARR14(2)                                                               <---------AHL20(2)     <---- -ARR14(2)       --------->RAP2.6(2)                     *TSS      <---------ANAC58        ---------- >AGP1  --------->ANAC46        ---------->DOF2  --------->CCA1(2) <---------ANAC46   ---------->DOF2 >ARR10 <---------bZIP60(1) <---------ANAC46---------->DOF2        <---------ANAC58 <---------YAB1   gagcttgacgacgacacagtcgcaaacgtgaagtgaaagtgtaagtgaaagagacggatgtttttgtttgtgtgttttattttactcttatagcccaatt  13357100                                                          --------->YAB1                                                         --------->ICU4                                                         <---------YAB1                                                       --------->YAB1                                                    --------->YAB1                                                  ----------->RAV1(1)                                               --------->PCF5                                              <------NtERF2                                              ------>NtERF2                                              --------->ATERF1(1)                                             <---------RAP2.3(1)                                             <---------DEAR3(2)                                             <---------ATERF1(1)                                             <---------ORA47(2)                                             ------>NtERF2<---------ICU4                                            <---------RAP2.6(2)                                            --------->ATERF1(1)                   ------>ZmHOX2a(2)                                            <---------ATERF1(2)                  --------->CCA1(2)                                            <---------DEAR3(1)                   <------ZmHOX2a(2)          <------ZmHOX2a(2)                 <---------RAP2.3(2)                 --------->AGP1         <---------ARR11(3)                 <---------RAP2.3(3)                 <---------ARR11(3) ---->AHL20(2)           <---------ANAC58   --------->ATERF1(2)         --------->AHL20(2)         -- -----AHL20(2)           <---------ANAC58  <---------ATERF1(1)--------->ANAC58  <---------AGP1  ----- -->CBF  --------->ARR11(3)                --------->ATERF1(1)--------->ANAC58  --------->ARR11(3) <-   ttttatgaccagatcattttctattttccttggccctgtcttaggggcggcccagcataataataagcaaaaaaaaaaataagatctaaattctgcatta  13357200                  --------->ATHB12               --------->YAB1               --------->ANAC46               --------->ANAC55(2)       --------->AHL20(2)     <---------ANAC55(2)                          <---------ARR11(3) ------->AHL20(2) --------->ATHB51                --------->GLK1(2)         <---------YAB1 ------>GT1   <-------TEIL <---------AHL20(2)    --------->RVE1(1)    <---------YAB1 --------AHL20(2)<---------YAB1            --------->AtLEC2    --------->TOE2(3)        ---------->DOF2   gttaaatacttaaatatacataattggatttaatcaaatccatccatgtaaaaatctgaactaaacctcactatgagtatgagtaacttataaagtcatt  13357300                                                                                            <--------                                 --------->TOE2(3)                                         <---------                               <---------YAB1                                         --------->AHL20(1)                               <---------TOE2(3)        <-----------GT1              <---------AHL20(2)                --------->ARR14(2)                  --------->AHL20(1)             --------->AHL20(2)                <---------ARR14(2)<---------YAB1    --------->AHL20(2)            --------->AHL20(1) <---------ARR11(3)----------------->AG             <---------AHL20(2)            <---------AHL20(1) <---------AHL20(1)----------------->AGL1          --------->AHL20(2)  <----------DOF2<---------AHL20(1)   ctatatattcagttttcgaatcccaaataagttaacattatagttttctcaaaattaattacactgtattagtcttttttctaatatatatattaacatt  13357400                                                      <------MYB83                                                      <------MYB46(1)                        <---------MYB59             <--------P                                     <-               --------->AHL20(2)                  <-------GAMYB                           <---------               <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      ------------       --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               ----------->GT1  *TSS -TOE2(3)     --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              ---------->DOF2    -- --GT1 <---------AHL20(2)     <---------AHL20(2)  <---------MYB46(3)       <---------DEAR3(1)    ----   tcttagaaaataaatataaaattagaccgaattttttttttttttttttttttggttggagcgactaaatttctccatcggcgaaagaaaaaaaaaacaa  13357500                                                                 <----------DOF2                                                                <---------ANAC58            --------->DAG2                               <---------TOE1(2) ---------ID1                    <-----------HVH21       <---------TOE2(2) -ID1      ---------->DOF2      <---------ANAC58      <-----------GT1                            <--- ------------>ANAC81            <---------ANAC58   <---------ARR14(2)                       <-------- --------->GT1              --------->MYB46(3)     --------->ARR14(2)                    ------->TEIL ----->MYB52(1)    --------->HSFB2a(2)    ------>ZmHOX2a(1)     <---------ANAC58        <---------CCA1(2)   aacgaaaaaaaaaaaaagtttctcgattcaacaagcgtcccttcctccttggggattcacaggtttgcttcttcgtcgatttgattctttgaatcttttt  13357600  Previous    Next  AGI:  At2g31300.1    Description:  ARPC1b (actin-related protein C1b); nucleotide binding. similar to ARPC1/ARPC1A (actin-related protein C1a), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G30910.2); similar to ARPC1/ARPC1A (actin-related protein C1a), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G30910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69944.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383) Range:  from: 13353199    to: 13357057    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g31305.1    Description:  similar to Protein phosphatase inhibitor [Medicago truncatula] (GB:ABN09808.1); contains InterPro domain Protein phosphatase inhibitor (InterPro:IPR011107) Range:  from: 13357499    to: 13358541    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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