Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ---------->DOF2    --------->AtMYB61                                       --------->TOE2(3)    ------->GAMYB                                <---------ZAT18       --------->AHL20(1)   --------->MYB46(3)                            --------->ZAT18       <---------ARR11(3)  -------->P --------->RAP2.3(3)        --------->TOE2(3)  <---------ANAC55(2)  --------->YAB1  ------>MYB46(1)                     <---------AHL20(2)  <---------TOE2(3)------------>CBF  ------>MYB83 <------NtERF2    <---------AHL20(2) <---------At4g35610 --------->ARR11(3) -MYC3       --------->RAP2.6(2)--------->AHL20(2) --------->At4g35610--------->AHL20(2) >MYC3  ---------->DOF2   ------------>CBF  ---------->DOF2----------->GT1<-----------GT1         ---   ctccaaccaaaacagcccccaaaaaaaacccaatttatattttcttaaaagtgagcttataacgtaaaagaaatatatacaatgctaattttcttacaac  13309400               --------->CCA1(2)              --------->ARR11(1)              --------->ARR11(3)        <------MYB83                        --------->AHL20(2)          ---------->DOF2     <------------CBF                           --------->YAB1     <---------ZAT6        --------->YAB1                             --------->WOX13(1)     ----------->GT1      <------ZmHOX2a(2)                         <---------YAB1   --------->ANAC55(2)   <---------ARR11(3)                       --------->ATHB12   <---------ANAC46      --------->ARR11(3)                       -------->HAHB4                 ----   <---------ANAC55(2)  <------ZmHOX2a(1)                        <---------ATHB12               -----   <---------ANAC55(1)<---------TOE2(3) <------MYB46(1)          <---------YAB1        <---------ANAC46 -------->GT1 <---------ARR11(3)       --------->MYB59           --------->ICU4        <---------AtLEC2   tggttaagtgttaaaagatatgtttaggatcatattggtatttggtaatcaggtttcaacatttgaaatgattaatcaaaaaataagttgcatagaaaat  13309500                                                              --------->AHL20(2)                                                              <---------AHL20(2)                                                        --------->TOE1(3) --------->AHL20(2)                               --------->YAB1    --------->AtLEC2 <---------AHL20(2)                --------->ANAC46     --------->TOE2(3) ---------->DOF2 ----->ATHB12                  <-----------GT1   <---------ATHB12<---------ATHB12 ---->ICU4             ----------->GT1     <-----------GT1 XXXXXXXXXXXXXXXXXXXX>MIR861-5P       <----   gatttaaaaaatgactataaacaagaagtaatttcacaaaccatgtaacaaatcaaaaccttaataaatcatgcatcaaagttggattagaaacatagct  13309600                                                                   <----------DOF2                                                                <-----------GT1                                                              <---------AHL20(2)                                                           <---------ICU4                                                           --------->AHL20(2)                                                           <---------AHL20(2)                   <----                                                           --------->ATHB51            <------------CBF                    <---------ANAC46                       <--------ATHB1            <---------YAB1         <-----------GT1                                  <---------ATHB12       <-----------GT1<----     --------->AHL20(2) --------->AHL20(2)                <---------ATHB51      <-----------GT1 <---- ------DOF2--------->ANAC46                  <-------TEIL --------->ICU4    <----------DOF2 <--------   taatggattatatacaacattttcgtttaaattagacacctagaatatacatgttatccaataatttaactttgccatctttttacccttattgtattgt  13309700 -----ANAC46         <---------ARR14(2)                                         --------->LBD16 -----ANAC58         --------->ARR14(2)                                         ------>ZmHOX2a(1) -----ANAC58        <---------CCA1(2)                     *TSS                ----------->RAV1(2) ----CBF           --------->LBD16                 --------->GLK1(2)          <---------LBD16   gtgtctccatctacaaatgtccgtatatttcaaacacagagagggagagagagactcttgtttaaaaaacttacttcttctcctgaaaattgagaagaca  13309800                                                     <---------ICU4                         --------->HSFB2a(1) <---------YAB1                        <---------TOE2(3)--------->ZAT2  <---------ARR11(3)                --------->YAB1           --------->At4g35610          <XXXXXXXXXXXXXXXXXXXXMIR157A-C                ----------->GT1          <---------ZAT2  --------->ARR11(3)                         >            <---------AHL20(2)           <---------At4g35610   --------->REM1(1)               ------            --------->AHL20(2)      <-----------GT1  --------->YAB1  <----------DOF2           ------   gacgtagagaagaattaattgtaacaaaggttctaattttcccagctctgattactcattatcttacatctctttctatctattgtcaaattcaaaccct  13309900                                                                   <---------MYB59                          >>>>>>>>>MYB98                   <---------YAB1                        ------>ZmHOX2a(1)                --------->AHL20(2)                      ------>ZmHOX2a(2)            --------------->AGL15         <---------AHL20(2)--------->MYB46(3)     ----------------->AGL3     <---------ATHB12<------ZmHOX2a(2)            ----------------->AGL1<---------DAG2 >>>>>>>>>>>>>>>>LFY--------->ARR14(2)       <---------ANAC58     --------->At4g35610 --->TOE2(3)        <---------ARR14(2) <---------TOE2(3) --------->YAB1 <----------DOF2 --->TOE1(3)  <----------DOF2  <---------ICU4<---------ANAC58---------->DOF2   taacccaatgtttaatcttttggatcctaacaaacatttctatggtttcgtttccaaaattataaaagagctaactttttttgaaattagtttcaaattt  13310000                                                                                             <------MYB83                                                                                        --------->AtLEC2                                      --------->ATHB12                                <---------AtLEC2                                  <----------DOF2                            <-----------GT1 <------MYB46(1)               ---------->DOF2 <-----------GT1<---------At4g35610          --------->WRKY12  --------        <<<<<<<<<TBF1<---------MYB46(3)     <-----------RAV1(2)    --------->ZAT14    ---------------    <-----------GT1<---------GLK1(2) <---------YAB1 ---------->DOF2<---------ZAT18   ----------------   ttggtttttcttcttcttaaagattgttgaatgttacttttgatttgcaggtgttaaagaatcatctagagtactcgttgaaccatttccatggaaggta  13310100                                                           <------ZmHOX2a(2)                                                           --------->CCA1(2)                                                          --------->ARR14(2)                                                          <---------ARR14(2)                                                          <-----------ARR10                                                          --------->ARR11(3)                                                    --------->HSFC1(1)                                                    <---------HSFC1(1)                                                    <---------HSFB2a(2)              <------MYB46(1)                       --------->HSFB2a(2)              <------MYB83                     <---------ANAC58         --------->ATHB12                      <---------ANAC58      <---------ZAT6         <---------ICU4                   <----------DOF2 <---------ARR11(3) --->GT1 --------->ATHB51                <---------DAG2   <---------AGP1                          --- >AGL15 --------->ICU4        ---------->DOF2 ---------->ID1------>ZmHOX2a(2)               --------- ->AGL1 <---------YAB1      <---------YAB1<---------DAG2  --------->AGP1                --------->At4g35610   acaaaatttcattatttggtctaatttctcatgaaagttgctacctttttcgttctggaagatctaaattagtgtttgagttacaaacgcagaagaaaga  13310200                                                                                              -------                                                                                              <------                                                                                             <-------                                                                                             --------                                                                                           --------->DEAR3(1)                                                                                           --------->AtMYB61                                                                                           <---------ALFIN1                                                                                          --------->MYB46(3)                                                                                        --------->DEAR3(1)                                                                                        <---------ALFIN1                                                                                        --------->AtMYB61                                          --------->ZAT2         <---------ANAC58      --------->MYB46(3)                                          <---------ZAT2         <---------ANAC58    --------->AtMYB61                        <-----------GT1   <---------At4g35610   --------->HSFC1(2)   <---------ALFIN1                     <---------MYB46(3)   --------->At4g35610   <---------HSFC1(2)   --------->DEAR3(1)                    <--------P           ----------->RAV1(1)   <-----------ARR10    --------->MYB46(3)                   <---------ANAC58  --------->ANAC58          ----------->ARR10  --------->AtMYB61             <---------ARR14(2)      --------->ANAC46     <---------ANAC46       --------->MYB46(3)            ========================HOX2a_HOX2a   --------->MYB52(1)             <---------MYB55(2)            <------ZmHOX2a(1)        --------->ANAC58  --------->ALFIN1         --------->SPL7-------    <----------DOF2<---------ANAC58<---------ALFIN1<---------At5g28300         --------->ARR14(2) ------->DOF2--------->ARR14(2)    --------->ZAT6--------->ARR14(2)            <---------ARR14(2) --- ->DOF2 <---------TOE1(1)    <------ZmHOX2a(2)   <---------ARR14(2)          --------->RAP2.6(2) ----   gaaagcctttacgaggaaatgggttgtttcgatcccaacactccagcagaagttacggtggagagtagcttctctcaagccgaaccaccaccaccaccac  13310300  Previous    Next  AGI:  At2g31220.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G06170.2); similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G06170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65796.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 13309758    to: 13311946    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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