Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------ANAC58                                               <---------ANAC58                                           ------>ZmHOX2a(1)                               --------->ARR14(2)                               <---------ARR11(3)                               <---------GLK1(2)--------->LBD16                               <---------ARR14(2)                             ----------->ARR10 <---------ANAC46                        <----------ID1   ----------->RAV1(2) --------->ALFIN1                     ---                  <---------ZAT14       <---------ATHB12    <-------PIF5                          ---                  --------->ZAT14      <---------ARR14(2)   ------->PIF5             --------->DAG2 < -----ZAT18   --------->MYB52(1)--------->GLK1(2)          <---------ANAC46      --------->YAB1 -----   cccttcgatttcagccaaactgcaatgggacaagattctccaatcctggccgtggaattggacgtggacgagatggctaagaaccataaggcatagagag  13278700      <---------ANAC58      <---------ANAC46      <---------ANAC58                                <---------TOE2(3)                --------->YAB1   <----------DOF2                                 <---------WOX13(1)      --------->YAB1 ------->TEIL                                    --------->ATHB12          <---------ICU4 ------>ANAC58                                  <---------YAB1             --------->ATHB12 ------>ANAC58              ---------->DOF2   <----------DOF2          <---------AHL20(2)           - ---------ALFIN1     --------->ATHB51    <---------ANAC58              --------->AHL20(2)------->TEIL ---->CCA1(2)       <---------YAB1       <---------ANAC58--------->CCA1(2)<---------ATHB12         --   acgcactttcttgtgtttgtttattattgtcaaagctaaaattgccttctttgattgagatttgagaaaacaataaatcattacaacaatgaaactaaaa  13278800                                                                       --------->ARR11(3)           -                                                                       <---------ARR14(2)       -----                                                                       <---------ARR11(3)       <----                                                                       --------->ARR14(2)       <----                                                                      ------>MYB46(1)         <------                                                                      <---------ARR14(1)    <--------                                                                      ------>MYB83          ---------                                                                      <---------CCA1(2)     -------->ATHB1                                                                    <---------MYB111(1)    --------->ICU4                                                           <---------AHL20(2)              <---------AHL20(2)                                                         <---------AHL20(2)                --------->AHL20(2)              <---------HSFB2a(2)                       --------->AHL20(1)                 <---------YAB1              --------->HSFB2a(2)                     --------->AHL20(1)                   --------->AHL20(1)          <----------DOF2                             <---------AHL20(1)                --------->ICU4       <-----------GT1                               --------->AHL20(2)<---------ARR11(1)<---------ICU4     <-----------GT1                          --------->TOE2(3)    --------->ANAC58    --------->AHL20(2) ----->ZmHOX2a(1)      --------->YAB1       ------->TEIL<---------AHL20(1)    <---------REM1(1)------ ------->TOE2(3)     --------->GLK1(2)  --------------->AtSPL8     --------->ANAC58--------->YAB1<---   tcctaaattacactttccaaaacaatcttgaaaccagttttgtttgtaccttgaaatatatatttttgcaccaaatcttgatgtagcataaaaattatta  13278900                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               <------ZmHOX2a(1)                                            <---------HSFB2a(2)                                            <---------LBD16  --------->ZAT2                                            <-----------RAV1(2)                                            --------->HSFB2a(2)                                        <---------MYB46(3)   --------->At4g35610                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                    --------->ALFIN1 <------ZmHOX2a(2)                                   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------TOE1(3)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------TOE2(3)             <xxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->MYB59               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------AGP1 -------->ICU4                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------ARR14(2) ---->AHL20(2)                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------ARR11(3) -----AHL20(1)                   --------->DAG2=============HOX2a_HOX2a    --------->ARR14(2) -----AHL20(2)                  <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------PCF2 ---YAB1                ----------->GT1<---------AtMYB61    --------->MYB52(1)   <xxxxxxxxxxxxxxxxxxx -ICU4                ---------->DOF2  --------->ALFIN1    <xxxxxxxxxxxxxxxxsmallRNA(le3)          -- >YAB1--------->ANAC55(2)       ---------->DOF2=====================================HOX2a_HOX2a   <xx --->YAB1         ---------->DOF2<xxxxxxxxxxxxxxxxxsmallRNA(fl3)------>NtERF2------>ZmHOX2a(2)  <xxxx ------YAB1--------->ICU4 ----------->GT1 --------->PCF5  --------->MYB46(3)<---------At4g35610<-----   taatttttaggtaatttttcaaaagaaagtgaaaaaaagtggtggtccaggagagatcgaaccagcgggccatagtggatctgagagacttcgaactatg  13279000                                                        <-----------GT1                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   --------->ANAC58                                                   --------->ANAC55(2)                                                   --------->ANAC46                                                   --------->ANAC58                                                   <---------ANAC55(2)                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)          <---------------AGL15  <xxxxxxxxxxxxxxxxsmallRNA(s)          <xxxxxxxxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <----------DOF2        <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->At4g35610    --------->ZAT2    <---------ALFIN1             <xxxxxxxxxxxxxxxsmallRNA(si3)        <---------ZAT14        <---------ZAT2------>MYB46(1)                  ----------->RAV1(2)        --------->ZAT14        --------->ZAT14 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  --    <---------ALFIN1           <---------ZAT14<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC58   --------->MYB46(3)          xxxxxxxxxxxxxxxx>smallRNA(s)                  ------>NtERF2       ----  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ARR14(2)      <xxx xxxxxsmallRNA(si3)        <---------DEAR3(1)------>MYB83                <---------ARR14(2)      <xxx ---->ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s)    --------->ANAC58 xxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------>NtERF2--------->LBD16   ------ xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(s) <----------DOF2  --------->WRKY18(1) ----YAB1<xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->GLK1(2)     ======   atccatccactgctgtaagagggaagtagtcgctgctctgtgaaaccagcctcacgcattaccctccgactttagaatccgcctgagtcaagccttcgcc  13279100                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        --------->CCA1(2)  ----------->HVH21                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     --------->TOE2(3)                                 --------->At4g35610       <---------ETT(1)                <---------DAG2                                 <---------ZAT2         <-----------HVH21               --------->AtMYB61    <---------ALFIN1        <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <  ----------->RAV1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->LBD16  <xxxxxxxxxxxxxxxxxx  <---------ALFIN1       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  - ------->PCF2       xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------HVH21             <xxxxxxxxxxxxxxxxxxx ------->HVH21     <---------ZAT2--------->ZAT2  --------->At4g35610  <------------CBF  <---------ALFIN1 xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ALFIN1      -- xxxxxxxxxxxxxxxxsmallRNA(si3)   <---------At4g35610 <-----------RAV1(2)    --------->MYB46(3)<------ ----->RAV1(2)  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------At4g35610<------ZmHOX2a(1)  --------->MYB46(3) =============RAV  --------->ZAT2<------NtERF2 <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->DEAR3(1)   tgacccacacagattactcacagcttggactgggcagctcagatatatgtcagcatcaggtccgacccgaggaattgaaccactgttccaccaccttatt  13279200                 <---------ARR11(3)                                              --------->At4g35610                 --------->ARR11(3)                                              <---------At4g35610<         <-----------HVH21                                                   --------->ARR14(2)    <-  <---------ALFIN1                                                      --------->ANAC58         ---- -----------------AGL1    <---------ANAC58                              --------->ANAC46         <--- xxxxsmallRNA(se3)        <---------ANAC58                              --------->ANAC58       <----- ---------------->AGL1   --------->MYB52(2)                           --------->MYB52(1)   ---------- xxxxxxsmallRNA(se3)   <---------MYB52(1)                           --------->MYB46(3)     <--------- ------->PCF2  --------->ANAC58                        <---------At4g35610   <---------ARR14(2)<----- ------CBF     --------->ANAC58             <---------MYB46(3)  <---------AHL20(2)        <----------   gtccccactcgggtcacaagctctcgttacttagctcgacttacagttgttgtgttcttctgatatataaacaaacgcaaaactgctgagttttccgatg  13279300                                              --------->ZAT18 ---------PCF2                             <---------ANAC58 ---------ID1                              <---------ANAC55(1) ----->ALFIN1                              <---------ANAC58 ------------AtSPL8                        <---------ANAC46 ----O2                                    <---------O2 ------->AGL1                      <---------AHL20(2)                                          ------ --------AGL1                      <-----------GT1       <-----------HVH21                     ------ ----TGA1a <-----------HVH21<-----------GT1--------->ANAC55(2)     <---------YAB1              ------ -------AGL1          <---------YAB1  <----------DOF2   <----------DOF2          ---------->DOF2  ---   tgggacaaaaaactgtcatttgttttgatttatcaatttacttttacgtgggctaaacctttcaggcccattatagactgatgaaaagccctatttaacg  13279400                                                --------->ANAC58                              -------                                                --------->ANAC58                              -------                                              ---------->DOF2                                 ------- --->ANAC58                              --------->ALFIN1                          --------->ZAT18 --->ANAC58                           <------ZmHOX2a(1)           >>>>>>>>>TBF1    <---------ZAT14 --->ANAC46                        --------->CCA1(2)           >>>>>>>>>TBF1       --------->ZAT14 ------->DOF2                   <---------TOE2(3)   *TSS <XXXXXXXXXXXXXXXXXXXXMIR838          <------   caaagagctctaaaaatatgaagagacagtttttgagataggagaggggaaagcaaatgcaagaagaagaagaagtgtctctatgtgctctgtctgaatc  13279500                                --------->At4g35610         <----------DOF2 <---------ZAT2    ------->GAMYB        --------->At4g35610 <---------DOF5.7(2)     --------->ZAT2 --------->MYB52(1)<----------DOF2 -->ARR14(2)    <---------ARR11(3)                --------->AHL20(2) -->GLK1(2)    <------ZmHOX2a(1)<---------At4g35610    --------->TOE2(3)         --------->YAB1<----- >TEIL<---------ANAC46   <---------At4g35610  ------>ZmHOX2a(1)            --------->YAB1      ------ ---ARR14(2)<---------LBD16----------->HVH21  --------->LBD16     ------>ZmHOX2a(1)--------->ICU4   tgttaacggcgttttcaggaactttgcagctgacttctgactacgttcctgataaattcttagtcttcctctctctctcatagtcagaattgtttagtat  13279600  Previous    Next  AGI:  At2g31140.1    Description:  serine-type peptidase/ signal peptidase. similar to serine-type peptidase/ signal peptidase [Arabidopsis thaliana] (TAIR:AT1G06200.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ73983.1); similar to OSJNBa0068L06.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE01583.2); contains InterPro domain Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927); contains InterPro domain Peptidase S26A; (InterPro:IPR014037); contains InterPro domain Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056) Range:  from: 13277003    to: 13278888    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g31141.1    Description:  unknown protein Range:  from: 13278919    to: 13279059    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g31150.1    Description:  ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism. similar to ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G06190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40622.1); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757) Range:  from: 13279452    to: 13281655    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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