Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                 <----------DOF2                              <------                                                 <---------DAG2                            --------->ANAC58   <---------AHL20(2)                       --------->LBD16                            ------->TEIL <  --------->AHL20(2)                       --------->HSFB2a(2)                    --------->At4g35610  --------->YAB1                           --------->ANAC46                    <---------At4g35610 <- >YAB1                                     <---------HSFB2a(2)             <---------ALFIN1--------->ANAC58 ->AGL2       <----------DOF2  --------->ZAT6 <---------ARR11(3)         ------>ZmHOX2a(1) --------->ANAC46   acaataaaaatgaatactttctcaaacccaaaaacactaactcacccagaacttttcgattgaatacccattttcctgcacatctgatgaatcactccac  13133400                                                                <---------AHL20(2)    --------->MYB52(2)                                         <---------AHL20(2)  <---------MYB52(1)                                           --------->AHL20(2) <-------GAMYB                                                 <---------AHL20(1) -------->MYB52(2)                                             --------->YAB1 --->MYC3                                                 --------->AHL20(2) ----MYC2                                           --------->TOE2(3) ----MYC3                 ------->MYC3              ------->GAMYB                              ------ --->MYC2        <---------YAB1                     --------->YAB1                      --------->ANAC55(2) ---ALFIN1<---------WOX13(1)--------->REM1(2)      --------->MYB46(3)               <----------DOF2 ---------MYB46(3)        <-------MYC3            --------->ANAC58                  <---------DAG2 ------TEIL  <---------GLK1(2)                    --------->ANAC58        <---------ATHB12   <-------   gttcgttatttgatagattatgctcaaacgtgtaaactacagaacacaatgcaaccaaaattcaataaaattcccaaagattagagctttatgtaatcaa  13133500                                <-----------HVH21                                          <---------                       ---------->DOF2                                             --------->At4g35610                    --------->HSFB2a(2)                                            <---------At4g35610                    <---------HSFC1(1)                                          --------->LBD16                    --------->HSFC1(1)   ----------->GT1                       --------->ANAC46                   <---------LBD16<---------WRKY12        ---------->DOF2      --------->LBD16      --------->YAB1<---------HSFB2a(2) ------------------------>ANAC81       --------->HSFB2a(2) --->WOX13(1) <---------ICU4--------->GLK1(2)         --------->GLK1(2)       <---------LBD16 --ATHB12--------->AHL20(2)<---------GLK1(2)      --------->YAB1              <---------HSFB2a(2)   tctcagactcataaaatcatttctggaaagaatcggtcagagaaggaaacaattagaatccaaaggagaagacttggtttcccggagctaaattcacctt  13133600                                                         --------->ANAC46                                                        <---------LBD16                                                      ----------->HVH21          --------->YAB1             ---------->DOF2                      --------->HSFC1(2)          <--------HAHB4 ------->TEIL           --------->ANAC58              <---------ARR14(2)      <---------MYB46(3)<---------YAB1   <---------HSFB2a(2)              <------NtERF2 <---------HSFC1(2)          <---------ICU4<--------   --------->HSFB2a(2)  --------->WRKY12 --------->ARR14(2)      <------MYB83--------->ICU4 <-------- --GT1     --------->ANAC58 --------->TOE2(3)------>ZmHOX2a(1)   <------MYB46(1)<---------YAB1   cgttcccagaggctcgaaagtcttcgatgaccttagtcgcccaaatcctagtagcttcgacggaagttggtttccctgcattattatcagacctgaatct  13133700                                                                                 --------->SPL1(2)                                                                                 --------->SPL7                                                                                 --------->RAP2.6(3)                                                                               <---------ZAT14                                                                               --------->ZAT14                                                                               <---------SPL7                                                                             --------------->AtSPL3                                                                             <---------------AtSPL3                                                                    <---------At4g35610                                                                 ---------->DOF2--------->SPL1(1) <--                                                    --------->LBD16 --------->ZAT2    <----------DOF2      <---------ALFIN1                             --------->ANAC46 --------->At4g35610          ---- -GLK1(2)                                          --------->LBD16  <---------ZAT2<---------RAP2.6(2) -CCA1(2)            <----------DOF2            -------->P --------->ZAT6  --------->GLK1(2)     ----   cttgttccccatcgcttattaggctttgctctgtctctctatctctcttctacccgagaaaacactagaaagctgagaaactgtacggcttcttgtgaga  13133800                                                                        --------->DEAR3(1)                                                                        ------->GAMYB                                                                        --------->RAP2.6(2)                                                                       --------->MYB46(3)                                                                     <-----------GT1                                                             <------NtERF2                                                            ------>NtERF2       ---------->DOF2                                     --------->ATERF1(2)    --------->ANAC58                           *TSS        <---------ATERF1(2)          <----------DOF2    --------->ANAC58                     <-----------GT1  <---------ANAC58            ---------->ID1 -----TEIL                         <---------ANAC58       <---------ANAC58 <---------DAG2 ----->CCA1(2)                     <---------ANAC46      <---------At4g35610         <-----------GT1 ----->GLK1(2)                     <---------ANAC58      --------->At4g35610     <----------DOF2   ttcaagaagcaaagcctcgaaatttgttcgatgagtttcgtttttgcccttgcagagtttgctggcattataaaccgccttctcttttttcttttttttt  13133900                   <---------TOE2(3)                 <---------AHL20(2)                <---------AHL20(2)                --------->AHL20(2)             <---------AHL20(1)             --------->AHL20(2)             <---------AHL20(2)             --------->AHL20(1)            <---------AHL20(2)                                                                     --            --------->AHL20(2)                                                                     --        <---------AHL20(2)                                                                   --------        --------->AHL20(2)                                                         <---------ZAT14 <-        --------->AHL20(1)                   <----------DOF2                 ------->TEIL    --------   ttgatgaaaataaaataaattaatgcttcggcatactaggcccattcctttgggctctaaaaatgttccaacttctatgtatgtctgtagttgataagca  13134000                                                                                             <-------                                                                                         <---------MYB59                                                                                        <---------TGA2(1)                                                                                        <---------O2                                                                                        --------->TGA2(1)                                                                                        <---------TGA1a                                                                                        --------->ANAC55(2)                                                                                        --------->bZIP60(1)                                                                                        ----------->GT1                                                                                        <---------ANAC58                                                                                        --------->ANAC58                                                                                        <---------ANAC55(2)                                                                                        --------->ANAC58                                                                                        <---------bZIP60(1)                                                                                        <---------bZIP60(2)                                                                                        <---------ANAC58                       <---------------AtSPL8                                           <---------ANAC46             <------ZmHOX2a(1)                                                          --------->O2-     <---------YAB1    <---------------AtSPL3                                    ---------->DOF2    - ------->GLK1(2)----------->GT1                                                  =================bZIP_DOF ------->ARR11(3)      --------------->AtSPL8                    --------->ARR11(3)    ----------->STF1 ->ANAC58  --------->ANAC58               ------->TEIL           <---------ARR11(3)  ----------->TGA1 --------ARR11(3)   <---------AHL20(2) ----------->GT1           --------->GLK1(2)--------->DAG2   <- ->ANAC58  --------->ANAC58       --------->ANAC55(2)     <---------ZAT6<---------------AtSPL8   ----   aaatcttatgagtaaggaatgttatattgtacttatatgtaatgtatatactataaactagtggcaaaatcttacaagtactaaaaagtgacgtaactac  13134100                                                                                               ------                                                                                             <-------                                                                                <------ZmHOX2a(1)                                                                                =====================HOX2a_HOX2a                                                                                =====================                                                                               --------->LBD16<------ZmHOX2a(2)                                                                              --------->LBD16--------                                                                             <-----------RAV1(2)       <-----------RAV1(2)                                                   <---------LBD16 -------- --MYB111(1)                                                             ------>MYB46(1)     <------- -------->ATHB51                                                         ------>MYB83        -------- -------->YAB1--------->ANAC55(2)                     <--------P         -------->P          <------- --------YAB1 <---------ANAC55(2)             --------->At5g28300      ------->GAMYB         -------- ----->YAB1   ----------->GT1                ----------->GT1          --------->MYB46(3)   ----------   tataattgtgcaggttaagtaacaaaatgtataagaaaatgtatagatggtaaatggtagtttggaatgctaaccaactccaggagaatgaatgagatct  13134200                                               =======================HOX2a_HOX2a                                               ------>ZmHOX2a(2)                                             --------->ARR11(3)                                             --------->ARR14(2)                                             <---------ARR14(2)                                             <---------AGP1                                             --------->GLK1(2)                                             <---------ARR11(3)                                            <---------CCA1(2)                 <----------ID1                                            <---------ARR14(1)               ----------->GT1                                         <---------LBD16                    <---------------AtSPL8                                         ------>ZmHOX2a(2)                  --------->DAG2 >ZmHOX2a(2)                            ==============================HOX2a_HOX2a --ARR14(3)                             <------ZmHOX2a(2)                  ---------->DOF2 =HOX2a_HOX2a                          <---------ARR14(2)          <------ZmHOX2a(2) ->ARR11(3)                            --------->ARR14(2)         --------->ARR11(3) ->ARR14(2)                      --------->ZAT18                  <---------ARR11(3)                < --ARR11(3)                      --------->ETT(2)                <---------GLK1(1)              <---- ->ARR14(3)                 <-------GAMYB=============================HOX2a_HOX2a            -------- --ARR14(2)                 <---------ZAT14--------->LBD16       --------->GLK1(1)         --------->YAB1 ->AGP1                    <-----------RAV1(1)<------ZmHOX2a(2)<------ZmHOX2a(1)          <---------YAB1 ->ARR10      --------->ALFIN1<---------ANAC46========================HOX2a_HOX2a <XXXXXXXXXXXXXXXXXX   tgtcaaacttatcgaggtgagacgatggactgttgtggaccgatccggatctggagcatcgcctaggagatcatccaaaaagtacaaagactataatttt  13134300  Previous    Next  AGI:  At2g30800.1    Description:  HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid binding. similar to NIH (NUCLEAR DEIH-BOXHELICASE) [Arabidopsis thaliana] (TAIR:AT1G06670.1); similar to hypothetical protein OsI_003809 [Oryza sativa (indica cultivar-group)] (GB:EAY75962.1); similar to hypothetical protein OsJ_003494 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13669.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69972.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374); contains InterPro domain Helica Range:  from: 13127430    to: 13133847    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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