Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       >>>>>>>>>ARR1                  ----------->GT1                    >>>>>>>>>ARR2              ---------->DOF2                 <---------ICU4             <---------AHL20(2)              --------->ICU4     <---------MYB52(1)         --------->AHL20(2)                 <---------AHL20(2)  --------->ARR14(2)         <---------AHL20(2)             --------->YAB1<---------WOX13(1)        <---------AHL20(2)           ----------->GT1--------->ATHB12    --------->AHL20(1)            <-----------GT1  <---------YAB1   <----------DOF2    <---------AHL20(2)       <---------YAB1 <---------AHL20(1)--------->LBD16    <---------AHL20(1)       <---------AHL20(2)  --------->YAB1<---------MYB52(1)             <------    --------->AHL20(2)     <---------ICU4  --------->YAB1   <---------LBD16                  <-------   --------->AHL20(2)  <---------AHL20(2) <---------YAB1  <-----------GT1           --------->ANAC55(2)   tcaaattttatttatttaaagggttttaatttttattaacagttataatatttatgattgtttccggttactttgatgctattttctcgtaattcccttt  13032700                                       --------->YAB1                             <---------ICU4                             -------->ATHB1                             <--------ATHB1                             --------->ATHB51                             <------------ATHB5                             --------->YAB1      <---------AHL20(1)     --------->ATHB12      --------->AHL20(1)    --------->ICU4                  <---------WOX13(1)    <---------AHL20(2) ----DOF2                   <---------ATHB12         <---------ANAC46  ------>ZmHOX2a(1) --DAG2<---------AHL20(2) --------->WOX13(1)     <-----------HVH21  ------>ZmHOX2a(1)   tgtacatatatatttagaaccaaaaattcaatcattgagaagcatactctctgtcaagtgtaattgattcctcctcttcattttttaattcttcatttct  13032800                                                            <---------ICU4                    <---------ALFIN1                        --------->YAB1                     ------              <---------WOX13(1)                           <---------ATHB12                    ------           <---------AHL20(2)                              --------->ICU4                      ------           <---------AHL20(1)                           ------>ZmHOX2a(1)                      ------           --------->AHL20(2)                         ----------------->AGL1                   ------           --------->AHL20(1)                       <-----------GT1                     <---------AHL20(2)       <---------AHL20(2)                      --------->AHL20(2)             --------->AHL20(2)       --------->AHL20(2)                    --------->ANAC46               --------->YAB1     <-----   --------->AHL20(2)                        --------->ANAC58 --------->bZIP60(1)       --------->AHL20(2)   <---------AHL20(2)                        --------->ANAC58 <---------bZIP60(1)   ----------->GT1   taagttttattaattaattgactcacctcttcatcttgtttatttccaagtaattttcctaatgatgtcaataaacaaaaataaaaagattaaaatcacg  13032900                                                                                                  ---                                                                                                 ----                                                                                     --------------->AGL15                                                                                     ------------>CBF                                                                                     ================                                                                                     <---------------AGL15                                              ------>NtERF2                         -----------------          ---------->DOF2               <----------DOF2                             --------->ANAC46    ----------->GT1              --------->MYB55(2)                                 <---------------- --->ANAC58                      <---------MYB46(3)                                 <---------------- --->ANAC55(2)                  --------->ALFIN1                                   <-----------------AG --->ANAC58                     <---------DEAR3(1)                                 <-----------------AGL1 --->ANAC46--------->DAG2       <---------AtMYB61                        --------->DAG2          <--- --->ANAC55(1)        <-------GAMYB --------->ZAT18                     ---------->DOF2 <------------CBF ----ANAC55(2)       ----------->GT1<---------ZAT18                <---------LBD16 ==================   caatatcagtaaaaaaggagagagggttaaatcggtggtggactttgcagccctaaaccattgtttcgcctcggaaaagcccatttacacaattgggaaa  13033000                                        <---------TOE2(3)                                        --------->ANAC46 --------->AHL20(2)                   <-----------GT1 ------>AHL20(2)                    <----------DOF2 ----->AHL20(2)                   <---------------AGL15 =================================================MADS_MADS >AGL1                            --------------->AGL15 -AG                           <-----------GT1                            --------->ANAC46 -AGL1       ---------->DOF2<----------DOF2                         ------>ZmHOX2a(1) ------AHL20(2)  ---------->DOF2 <-----------------AGL1            --------->ANAC46              <--- =================================================MADS_MADS  <----------DOF2 *TSS            <-------   taaataaaaacagagtaaagaaaggaacgtcttttactctttacggtatcgctcgcttctcttctttctcctcaacacgaagacccctcttgcctcttta  13033100                                                               ------>ZmHOX2a(1)                                                     =================HOX2a_HOX2a                                                     ------>ZmHOX2a(2)                                                     ==============HOX2a_HOX2a                                                    ===============HOX2a_HOX2a                                                    ==================HOX2a_HOX2a                                                    <------ZmHOX2a(2)                                                   --------->ARR11(3)                       <--------                                                   --------->ARR14(2)                       ------->TEIL                                                   <---------ARR11(3)                      <---------CCA1(2)                                          ------>ZmHOX2a(1) ------>ZmHOX2a(1)         --------->TOE1(2)                                          ==================HOX2a_HOX2a       --------->ANAC58 ------YAB1          <<<<<<<<<TBF1        =================HOX2a_HOX2a        --------->ANAC58 ---DOF2          <<<<<<<<<TBF1<---------ALFIN1    <---------ARR14(2)   <-----------GT1    <---------GLK1(2)   ttagagagaccccttccttcttcttcttcaccttcaccttcttcctcgattcagatcgtctcctcctctgttttatactcaccctattccttcgaatctc  13033200                   <-----------GT1                 --------->GLK1(2)                <---------GLK1(2)                <---------ARR14(2)                --------->ARR14(2)              ----------->ARR10            <---------LBD16        <-----------GT1                                                        <----------DOF2      < -ARR11(1)  --------->LBD16                                       <---------YAB1       <---------YAB1   tctccatttttatccccagattctcccttcttcaacctcgtcgactcttcttcatcactctatttcttccgattgagacttctttcactctgattttctt  13033300            --------->ARR11(3)            <---------ARR11(3)                                                         <---------ARR14(2)          --------->ARR14(2)                                     --------->TGA1a       --------->ARR14(2)          <---------ARR14(2)                                     --------->ANAC58     <---------CCA1(2)       <---------ANAC46                                          --------->ANAC58  --------->TOE2(3)       <---------TOE2(3)                              <------MYB83                ----------->GT1      <---------LBD16                                 <------MYB46(1)            <---------TOE2(3)   <----------DOF2                                   --------->MYB59    <---------MYB46(3)       <---   <---------DAG2                    --------->ARR14(2)          <---------TGA1a <---------TOE1(3) -----------------AGL1               <---------ARR14(2)          ====================================   cgaccctttacggatatattcggtcttgagtctccatcggatttggatttgaatgtaggtatctcgcacgagagttgttgtttaacgtaaatctgggttc  13033400              <---------MYB52(1)             <-------GAMYB            --------->MYB52(2)           <XXXXXXXXXXXXXXXXXXXXMIR3933           --------->TOE1(2)         <------MYB46(1)                         <---------ANAC55(2)         <------MYB83                            <---------ANAC58        --------->MYB55(2)                  <---------------AtSPL3        <---------MYB46(3)             <---------LBD16          ==============HOX2a_HOX2a    <---------AtMYB61                 <---------ANAC46          <------ZmHOX2a(2)               ----- -------DOF2<---------MYB46(3)     <---------ARR14(2)    <-------TEIL  ------>ZmHOX2a(1)       <----- =======bZIP_DOF              --------->AtLEC2   <---------ANAC58 --------->WOX13(1)     <---------TOE2(3)   ttttttttggtgggtcgttgtttttcttctacatgcagttttggggatagtacgtgcgattcatcgatcaatcctcgtttagatagacatcaaggattta  13033500                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                   <---------AtLEC2                                                                 --------->ANAC58                                                                 --------->ANAC58                                                               <---------ANAC46                                                               <---------ANAC58                                                               <---------ANAC58                                                              <------NtERF2                                                          --------->MYB55(2)                        -                                       --------->DAG2     <---------MYB46(3)                        <      <---------MYB52(1)              ---------->DOF2     --------->ABI4(2)                         -    ----------->GT1                <------NtERF2         <---------DEAR3(1)          ----------->HVH21    <---------MYB46(3)            <---------MYB46(3)     <---------AtMYB61     ------>ZmHOX2a(1)   -- ----->DOF2                      <---------RAP2.6(2)     --------->ALFIN1   ---------->ID1         <- ----AHL20(2)           <------ZmHOX2a(1)           --------->MYB52(1)  <---------bZIP60(2)     -----   aaggagtcgttaagagagcaatggaaggagacatggtggctaaagtgaagagagaaacggtggtggcatgcatgacttgtcctctctgtgacaaactcct  13033600  Previous    Next  AGI:  At2g30580.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G06770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22649.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 13033077    to: 13037738    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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