Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       ----------->GT1 ---->ZmHOX2a(1)                                         <---------YAB1 -------------AGL15                            <---------YAB1 ------------>AGL15                            ----------->GT1 ------------->AGL3                          <---------ICU4                                  -------- --------------AGL3                          --------->YAB1                               <---------At4g35610 ->At4g35610                                --------->ICU4----------->GT1                --------->ANAC58 >AGL2                             --------->AHL20(2)  --------->YAB1        --------->AHL20(2)    -- >AGL3                             <---------AHL20(2) <---------YAB1         <---------AHL20(2)   <-- -AGL3              <---------MYB52(2)      <---------ATHB12         <---------ANAC46    --------->ANAC58   ccttatgtagttactcttagccactaacatgaactatatatatacaatcatgaaaaattatagttaaaattttgtgtaattaaaaacatgtaagctaatg  13012300                         <-----------GT1                        <---------YAB1                      <--------HAHB4                      --------->YAB1                      <---------ICU4                   ------>ZmHOX2a(1)           --------->ANAC58                                       <---------AHL20(2)           --------->ANAC46                                    --------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    --------->AHL20(2) ->MYB52(1)--------->ANAC58                    <---------YAB1 <---------AHL20(2)  ----------->GT1 ------------->AtSPL8<---------YAB1 --------->ANAC58<---------ARR14(2)  ------>ZmHOX2a(1) -------ANAC46--------->DEAR3(1)    --------->ANAC58--------->ARR14(2)  <----------DOF2     <--------   gtttgtactaatctcgccatcctattattactctattcaagcctagttcatgagtatatgaaaaataaataatccttttttgtattgaaaaatgttgtga  13012400                       <---------------AGL15                       --------------->AGL15                       <---------DAG2                       --------->TOE2(3)                      ----------------->AG                                   <---------ARR14(2)                      ----------------->AGL1                                 --------->ARR14(2)                      ----------------->AGL3              --------->MYB46(3) <---------ARR14(3)                  <---------ANAC58          <----------DOF2                  --------->ARR14(3)                  <---------ANAC58         <---------ANAC58                  <---------ARR11(3)    --             <---------MYB46(3)            <---------ANAC58                  --------->ARR11(3)  ---- -ANAC46     <---------REM1(1)  ----------->GT1   ------>NtERF2        --------->ETT(1)  <-----------GT1   accaagaattaagagttgttgcttaccttatgaagagagaaattggcttctccgacttcaacaacaacatcggtcggaatatcttgagaaaaaaccctac  13012500                                         <------NtERF2                                        --------->LBD16                                 <---------ANAC58                                        ------>NtERF2                                 <---------ARR14(2)                                       <---------LBD16                          <---------WRKY18(1)                                       <---------ANAC46                        --------->WRKY12                                      <------NtERF2                            --------->WRKY38(1)                                      <---------LBD16                          ----------->HVH21           <-------TEIL              ------>NtERF2                     <---------ANAC58 <---------ANAC58    <---------ANAC55(2)       --------->ATHB12                         <---------ANAC58<---------MYB46(3)   <-------TEIL            <---------At4g35610                        --------------->AtSPL8<-------- --------->GT1    --------->AHL20(2)--------->ANAC46                <---------GLK1(2) --------->ARR14(2) ------>DOF2  ----------->GT1<---------YAB1   --------->GLK1(2)    --------->ATHB12  <---------MYB52(1)   aaagttacatatatacatgttaaaatttctgatgattcgcgccgggagactctattggtgaaactagactgattcgtaccattgaccggttcttgcaaga  13012600                                                                                   <------------CBF<-                                                                                  --------->ATHB51 --                                       <---------At4g35610                        --------->ATHB12 --                                       <-------GAMYB                             --------->ICU4    <-                    --------->ATHB12  <-----------RAV1(1)                      --------->YAB1     <--             <-------TEIL       ---------->ID1                               *TSS<---------YAB1 <---- -AtLEC2  <---------ZAT6       <-----------GT1  <---------AHL20(2)   <------ZmHOX2a(1)          -----   cttgaagacatagagttcatgttgatggggttttttccttctgttgccattttttttggttctctattgaaggagatggaagcataattggagagtgtct  13012700                                    --------->ANAC46                                    --------->ANAC58                               <---------ARR14(2)                               --------->ARR14(2)                             <---------ALFIN1            <----------DOF2 ------------>CBF <------------CBF          --------->ANAC46 --------AHL20(1)       <---------ATERF1(1)                          <---------ANAC58 ------->AHL20(1)      <---------TCP15(1)       ----------->GT1  <---------WOX13(1) ------->ARR11(3)      --------->PCF2------------>CBF --------->YAB1 <---------ANAC58 --------ARR11(3)     <-----------HVH21        <---------TOE2(3)<------------CBF ---------TBP         --------->TCP20--------->MYB46(3)        --------->ATHB12--------->TOE2(3) -----------AGL15     <---------PCF2--------->ANAC58  --------->AHL20(2)       --------->YAB1 ---------->AGL15     --------->TCP15(1)<------------CBF      <---------YAB1<---------CCA1(2)    <---   atatattgaaatttctttagcatgggtccccccaatccacccaattgctaatgtaataatatttgtgattggcttcttctatcttatttttctaagtttt  13012800                                                                                <----------DOF2              <---------ANAC46                     <---------ANAC58        <----------DOF2        <--   ---------->ID1            <----------DOF2       <---------ANAC58   --------->DOF5.7(2)     <------ ------AHL20(2)         <-----------GT1    --------->ZAT6          ---------->ID1   <-----------GT1   tatttgtcgttttctgatgtgtttattatctcttttagttaactcactctaatccttgtgtttgtcttcgtcgtttactttccttttcaccatttccttt  13012900      --------------->AGL15      <---------------AGL15      ----------------->AGL1     ----------------->AGL1     <-----------------AG     <-----------------AGL1     <-----------------AGL3     <-----------------AGL2                                                                     <----     ----------------->AG                                ------>MYB46(1)                      -------     ----------------->AGL2     <---------DEAR3(1)       ------>MYB83                        <-------    ---------->ID1           --------->ETT(2)        <---------ARR11(3)                  <---------DAG2 <----------DOF2     ------->TEIL            <---------AHL20(2)                          <----------DOF2 <---------DAG2  --------------->AtSPL8    --------->ANAC55(2)                         ------>MYB83 ---------GT1  --------->ARR14(2)       <---------AHL20(2)                             ------>MYB46(1) ----DOF2      <---------ARR14(2)------>NtERF2       --------->ARR11(3)           <-----------GT1   taacttttccctatttggatatgtacttgtatcgacggctattttatgtaatttagaccttccacatatataccgatatatgtttcaccaactttttgat  13013000                    ------>ZmHOX2a(2)                  <---------ARR11(3)                  --------->ARR11(3)              ------>ZmHOX2a(2)             <------ZmHOX2a(2)            --------->ARR11(3)            --------->ARR14(3)                      --------->ARR11(3)     --------->MYB52(1)                             <---------ARR11(3) -----YAB1  <---------ARR11(3)             --------->YAB1    --------->ANAC58 -->YAB1   <---------GLK1(1)            --------->TOE2(3)    --------->ANAC58    <----------DOF2 --YAB1    --------->GLK1(1)<---------ANAC46       <---------CCA1(2)   <----------DOF2            ---   aatagactaacagagatctcgatcttggtgatttgtagataacattaataaacatatctctgtaagtaacatgctttactacgcttttatttagtaaatg  13013100                  --------->AHL20(2)                  <---------AHL20(2)                 --------->AHL20(2)             <---------YAB1            --------->AHL20(2)            <---------AHL20(2)         --------->TOE2(3)           <---------TOE1(3)        <--------HAHB4               ------->TEIL        --------->YAB1         --------->DAG2       <---------YAB1         ---------->DOF2     --------->YAB1    --------->AHL20(2) <---------AHL20(2)    <---------AHL20(2)       <---------WOX13(1)                     <---------YAB1 --------->AHL20(2)<---------YAB1   <---------DOF5.7(2)                               <---------AHL20(2) ---->TEIL<---------YAB1 ---------->DOF2--------->DOF5.7(2)                         <---------YAB1   tatttatttatcattaaaattaaaattaaaagaaaagtgaacgtttactaattgatatttggctaactacattcaaattatcaactattattttagtaaa  13013200  Previous    Next  AGI:  At2g30520.1    Description:  RPT2 (ROOT PHOTOTROPISM 2); protein binding. Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;GB:Q93VA6;GB:Q9M6N8); similar to signal transducer [Arabidopsis thaliana] (TAIR:AT5G67385.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21296.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) Range:  from: 13009819    to: 13012677    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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