Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->ANAC58                                                                    --------->ANAC46                                                                    --------->ANAC58                                               <----------CDC5      <---------TGA1a                                               ===============================MYC_MYB                       --------->DAG2         ----------->RAV1(2)   <---------O2                      ---------->DOF2         ====================RAV                   --------->At4g35610      --------->ZAT18         --------->TGA1a                   <---------At4g35610--------->YAB1                --------->O2               <-----------HVH21     <---------YAB1               <---------ALFIN1              --------->ANAC58      <---------TOE2(3)          --------->ZAT14         <<<<<<<<<<<<<<              --------->ANAC46     --------->YAB1       --------->ZAT6            <-----------GT1              --------->ANAC58   <---------WOX13(1)   ----------->RAV1(1)  --------->YAB1      <-----   tgagaaaacaaaaaccaagtcagataaagcatgagattgatgatactgccctgagccaacactacttcacacgtctataacaattatccatacaatggcg  12914200                     <---------ARR11(3)                     --------->ARR11(3)                    <---------CCA1(2)   --------->ZAT6                                           ----             ------>MYB83  --------->TOE2(3)             --------->GLK1(2)                       ----             ------>MYB46(1)          <-----------HVH21 <---------GLK1(2)            <---------ALFIN1 <<<LFY     ----------->RAV1(1) <-----------GT1       <---------YAB1             <---------MYB52(2) ----ANAC46--------->AtMYB61------>ZmHOX2a(1)   <-------TEIL      --------->TOE2(3)  --------->ZAT6   aaaacagacaacaccaacatatatatcttccttataaccttgtcactagattcaatacgattctgaaaccctagtatttagaaacgaacactctatataa  12914300                                                         <------ZmHOX2a(1)                         <-       --------->ANAC46                       -------->ATHB1                                       --       --------->ANAC58      <---------ZAT14  --------->ATHB12                                     <-       --------->ANAC58      --------->ZAT14  <---------ICU4                                     <--- ----->At4g35610--------->TOE2(3)            <---------ATHB12       <---------TOE2(3) --------->GLK1(2) ------->GT1    --------->TOE1(3)         ------------>ATHB5  <-------TEIL    <---------ARR11(3) <---   gctaaaaacaagcaaaaaccctaacattcagtactgtagaagcttgaatcattggtacaggaagttcatggaggtttcaacatctaagaatttggaaatt  12914400                                                             <---------ARR14(2)                     <                                                     <---------ANAC46                        <-------                                                  ------>ZmHOX2a(1)                          -------- ----------->HVH21                                <----------DOF2                            <------- --------ANAC58                               <---------ARR11(3)                --------->ATHB12    < ------->ANAC55(2)                        <---------ANAC58<---------TOE1(3)   <---------WOX13(1)   <- --------ANAC58                           <---------ANAC58<---------TOE2(3) --------->ATHB12 -------- ------AHL20(2)                        <----------DOF2<-------GAMYB       <---------WOX13(1)<-------- --------GT1                    <-----------GT1 ------>ZmHOX2a(2)   <---------REM1(1)   ----------->GT1   tacttgacgaattagattaaacgagaagagaagtttaccctctttcttgatcctttcgttgaggttttggatgtagattgattgattcggtggtatatct  12914500      --------->ARR11(3)      <---------ARR11(3)   <---------DOF5.7(2) <---------MYB52(1) --------->DOF5.7(2)                  --------->GLK1(2) ---------RAP2.6(3)                  <---------ARR14(2) --ARR14(2)                          <---------ARR11(3) ->ARR11(3)             --------->REM1(2)<---------HSFB2a(2) --ARR11(3)       --------->At4g35610--------->ARR14(2) -------GAMYB     <---------At4g35610--------->ARR11(3)          <---------ZAT18      *TSS --------ANAC46   <---------ZAT2     <---------GLK1(2)           --------->ZAT18<---------ZAT2  ----- ->ARR14(2)     --------->ZAT18    <---------YAB1 <---------TOE2(3)        <---------ANAC46    ------ -CCA1(2)       <---------ZAT18    ----------->ARR10<------ZmHOX2a(1) --------->MYB52(1)      <------   gccgttaacatcttcgagtgagctcgtgaagacgatgaagattctcgagactgaggaatttagagagagccctaatggtgggaactgggaatgagagaga  12914600                                                                --------->MYB55(2)                                                                <------MYB83                                                             <-------GAMYB                                                            <---------MYB46(3)                                                            --------->MYB111(2)                                                            --------->MYB52(2)                                                            --------->MYB55(2)                      <---------ANAC58               <---------MYB52(1)                      <---------ANAC58             <---------ANAC46         ------>ZmHOX2a(1)                      <---------ANAC46            <------NtERF2 <------MYB46(1)                  --------->At4g35610            ------>NtERF2  <---------MYB46(3)         ------>MYB46(1)     ----------->GT1 <-------TEIL               <---------DEAR3(1)         --------->TOE2(3)--------- ------------------->ANAC81                     --------->DEAR3(1)     <---------GLK1(1)   ------>MYB83 --->CCA1(2)      --------->ZAT2                --------->ANAC46<---------DEAR3(2)      --------->DEAR3(2) ----ID1 ---------->DOF2                   <-----------GT1  <-----------RAV1(1)  <----------DOF2   cgaagaagagtaaaagaaatagctgcgtttcaacatcagactatttaacgacgccgtttagtttgttggttcgatttcctaaacttttgtaccaacgtga  12914700                   --------->ARR14(2)               <---------LBD16              ------->TEIL     --------->MYB52(1)    ------>NtERF2--------->LBD16    <---------SPL7 <---------ARR14(2)   --------->DEAR3(1)                                                   <------NtERF2   ----------->HVH21                                                  <---------LBD16  --------->DEAR3(2)                                                  --------->ETT(1)  --------->ATERF1(1)        <---------WRKY18(1)               --------->ATHB12  <----------DOF2 <---------At4g35610         <-----------GT1        --------->LBD16<---------MYB46(3) --------->At4g35610        ----------->HVH21      ----------->GT1--------->ALFIN1              <---- >O2<---------RAP2.6(3)     --------->WRKY12      <---------LBD16 <---------AtMYB61<---------YAB1<---   atgagccgaccggatggaccggatttgaatttgaccggctagacagaattgaaccggaaatagaatgagtggtcgggattggacttttatagactcgaga  12914800      <---------AHL20(2)      <---------YAB1                   <---------ICU4   --------->AHL20(2)                  <--------HAHB4                       ----------->GT1         -   <---------AHL20(2)                  --------->YAB1                      <---------TOE2(3)        <  <---------AHL20(1)                  <---------ATHB12                 --------->YAB1               <  <---------AHL20(2)            ----------->GT1                      --------->AHL20(2)             -  --------->AHL20(2)     ---------->DOF2                        <----------DOF2                     - -----ARR11(3)         --------->MYB46(3)                       <---------DAG2                    <-- ---ZmHOX2a(2)       ----------->RAV1(1)    <---------YAB1  --------->MYB46(3)                 <-----   tcaatttttttattgcaaaattccaacaaaagtcttgtgaatcattttgattcaaatgttcaacaactttttaaaataatgtaaatgatgttgtattttt  12914900                                                                                             --------                                                                                         <-----------HVH21                                                                                       <-------MYC2                                                                                       <-------MYC3                                                                                       ------->MYC2      <---------ANAC58                                                                 ------->MYC3      <---------ANAC58                                                                ===============     --------->ZAT2                                                                   <---------O2     <---------ZAT2                                                                   --------->TGA1a     <---------At4g35610                                                              <---------TGA1a     --------->At4g35610                                           ----------->HVH21  --------->O2 -------->ZAT2                       --------->TOE2(3)           --------->ANAC55(2)  <---------ANAC58 ---------At4g35610           <---------ARR11(3)            --------->YAB1            <---------ANAC58 ---------ZAT2                --------->ARR11(3)    --------->ARR11(3)                <---------ANAC46 ---------->RAV1(2)  --------->HSFB2a(2)            <---------ARR11(3)                --------->ANAC55(2) -------->At4g35610  <---------HSFB2a(2)    --------->TOE2(3) <-------TEIL            <---------ANAC55(2) ---------RAV1(2)    ----------->GT1 --------->TOE1(3)--------->TOE2(3)      <-----------GT1 <------- ------GT1   <---------ARR14(2)   <-----------GT1  <---------CCA1(2)  <---------WOX13(1)--------->ALFIN1   ccagctgagcttgcaaatttgttctgaaaaaagatttaaccttagaccttagtatatctcaatattcatgtgatagataatacaattcacgtgtgagccg  12915000        --------->DAG2      ---------->DOF2    --------->YAB1                                                  --------->ZAT6 ->At4g35610            --------------->AtSPL8                  <----------DOF2         <------ZmHOX2a(1) ================bZIP_DOF              <---------DAG2        <-----------GT1    <---------AHL20(2) --At4g35610   --------->YAB1          <----------DOF2<-----------GT1          --------->AHL20(2) <--   attgaatcaaaaggcattaaaaatgcaatgtactaaaatgcctttttgtttctgtgttacatttttctttacactgagaaaataaatcgaggatgtttca  12915100  Previous    Next  AGI:  At2g30260.1    Description:  U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding. similar to small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative [Arabidopsis thaliana] (TAIR:AT1G06960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21358.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 12912479    to: 12914586    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g30270.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01750.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO21348.1); contains InterPro domain Protein of unknown function DUF567 (InterPro:IPR007612) Range:  from: 12914918    to: 12916338    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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