Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->AHL20(2)                                                                          <---------AHL20(2)     ----------->GT1                                                     --------->AHL20(2)    --------->DAG2                                                   --------->AHL20(2)   ---------->DOF2                                                   --------->AHL20(1)     --------- ------>ANAC58                                                      <---------AHL20(2)      --------- ------>ANAC58                                                      --------->AHL20(2)     --------->ANAC58 -------->GT1        ----------->GT1                            --------->AHL20(2)         --------->ANAC58 ----->DAG2         --------->YAB1                              <---------AHL20(2)   --------->TOE2(3) ----->DOF2   --------->ANAC58                               ----------->GT1        ----------->GT1 >YAB1        --------->ANAC58       --------->AHL20(2)      <------ZmHOX2a(1) --------->YAB1 >AHL20(2)--------->ZAT6     ----------->GT1          ---------->DOF2<---------AHL20(2)    --------->ANAC46   aagcaaaaagtaacacaaacaattagaaaaaatgaaaaatttaagagattagttgataaagaaggattaattaaattaaaatgaaaatgttaaacgtaag  12791700                                                                   --------->YAB1                                                                   ---------->DOF2                                                            --------->ATERF1(1)                                                            ------>NtERF2                                                            <------NtERF2                                                           <---------ORA47(2)                                                           <---------ATERF1(1)                                                           <---------RAP2.3(1)                                                           <---------DEAR3(2)                                                           ------>NtERF2                                                          <---------RAP2.6(2)                                                          --------->ATERF1(1)                                                          <---------RAP2.3(3)                       <------NtERF2                     --------->ATERF1(1)                        -                <---------ANAC58                    <---------ANAC58                                -                <---------O2                        <---------ANAC46                                -                ========================bZIP_DOF    <---------ANAC58    <----------ID1             <-                <---------ANAC58               --------->ALFIN1   <---------ATHB12               <--- <---------TOE2(3)   <---------ANAC46      ---------->DOF2<---------RAP2.3(2)         --------->At4g35610 >TOE2(2)       <---------TGA1a        <---------HSFB2a(2)<---------ATERF1(2)         --------->ZAT2- >TOE1(2)<-----------GT1     ---------->DOF2--------->DAG2<---------DEAR3(1)---------->DOF2--------->YAB1   attaagaaattataccagtcgtggccgagaacaaagatggcccagaaaagtgttccttgggcggcccaataaagaggccaaaggaaccagctatcaacat  12791800                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                          <------NtERF2                                                         -----                          <---------------------WRI1  <---------WOX13(1)                        -----                         ------>NtERF2              --------->ATHB12                      ===========                        <---------DEAR3(1)   --------->bZIP60(1)                      ---------------                        --------->DEAR3(1)   --------->ANAC55(2)              ------>MYB46(1)  <-----     <------NtERF2     --------->ATERF1(1)   <---------ANAC55(2)              ----------->RAV1(1)----   <---------DEAR3(1) <---------ATERF1(1)    --------->ANAC58            <-----------GT1  =========== -------->ANAC58      ------>NtERF2          --------->ANAC46      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->ANAC55(1)  ----------->HVH21       <---------bZIP60(1)  <------ZmHOX2a(1)  <---------ANAC58 -------->ANAC58    ------>NtERF2         <---------ETT(2) ------>ZmHOX2a(2)  ------>MYB83<------ZmHOX2a(1) --------LBD16      --------->LBD16    ----------->HVH21   ==============HOX2a_HOX2a <---------ANAC58 ----TEIL     ---------->DOF2  <---------ICU4--------->ANAC58 ---------->DOF2 --------->MYB52(1)----- -------->ANAC46   --------->RAP2.6(2) ----------->TGA1  <---------ARR11(3)--------->ANAC46--------->ARR14(2)   acacggcagcgatggccaaagccgcgacggcgataatgtctctgacgacgtaactcattgatctcaaaggactcttaacccaacagtgcttaggaatcgc  12791900                                                                               --------->GLK1(1)                                                                               <------ZmHOX2a(2)                                                                               <---------GLK1(1)                                                                              --------->ARR14(2)                                                                              <---------ARR11(3)                                                                              --------->ARR14(3)                                                                              <---------ARR14(2)                                                                              --------->ARR11(3)                                                                            <------NtERF2                                                                           ------>NtERF2                                                                          <---------ANAC46                                                                         --------->ATERF1(1)                                                                         <---------LBD16                                                                         <------NtERF2                                                                        <---------ERF1                                                                        ------>NtERF2                                                                        <---------RAP2.3(1)                                                                        <---------ATERF1(1)                                                                        <---------RAP2.6(1)                                                                        <---------RRTF1(1)      --------->ARR11(3)                                                <---------DEAR4(2)      <---------ARR11(3)                                               --------->DEAR3(1)     <---------CCA1(2)                                                 <---------DEAR3(1) -----NtERF2                                                          --------->ATERF1(1) --->NtERF2  <---------ARR14(2)                                       --------->RAP2.6(1) ------>ABI4(1)                                                       --------->RAP2.3(1) ----->RAP2.3(3)               <---------ZAT18                        --------->ERF1 ----->DEAR3(1)           <-------GAMYB                               --------->RRTF1(1) ----->RAP2.6(2)         --------->MYB55(2)                          <---------RAP2.3(1) ---->ERF1   --------->ARR11(3)--------->ZAT18                       <---------ATERF1(1) ---->ORA47(2)           --------->MYB52(2)                          ------>NtERF2 ---->RAP2.3(1)          <---------MYB46(3)                         <---------DEAR3(1) ---->ATERF1(1)         <---------AtMYB61                           --------->ANAC46                < =====================HOX2a_HOX2a                                  <---------LBD16                 <- ------>WRI1 --------->ARR14(2)--------->ZAT14                    <---------ATERF1(1)             <-- ----ATERF1(1) ------>ZmHOX2a(2)                               <-----------HVH21------>ZmHOX2a(2)<--- ----->RAP2.3(2)        --------->ALFIN1<------ZmHOX2a(2)     --------->LBD16 <---------ARR14(3) <--- ====================HOX2a_HOX2a       <-----------ARR10    <---------LBD16--------->LBD16       <--- ---->DEAR4(2)<------ZmHOX2a(2)<---------ZAT14        <----------DOF2--------->LBD16            <----   cgcccttatatctccgatcttgaacggtggttgtgcactcggatcaaacctttcttctttcttccggtctccggcgccgggatctccgttcacattggtg  12792000                        --------->LBD16                       --------->DEAR3(1)               -------->P<------NtERF2 <------MYB46(1)--------->MYB46(3) <---------MYB46(3)   <---------LBD16 <---------DEAR3(2) --------->DEAR3(1) <------MYB83 ------->GAMYB ---------AtMYB61------->GAMYB--------->ALFIN1 --------MYB52(1)--------->AtMYB61 -----GAMYB  <---------MYB111(1) ------ANAC58<---------MYB52(2) ------ANAC58<---------MYB111(2) ------ANAC46<---------MYB55(2)                                         ---------->ARF1      -------- ---TEIL     --------->MYB46(3)         ---------->DOF2                 ---------->ID1 <---------ZAT18   cgttggtccatagcaacaaccatcgccggagagagggggagagaaagagagaagagagagagagagagtctcttgtctcaaaaatgttatgcgctcagtg  12792100                                                                                     ---------->DOF2                                                          ---------->DOF2         --------->YAB1       <---------ANAC46                                  <---------AHL20(2)  ------------>CBF       ----------->GT1                                 ----------->TBP     --------->ETT(2)      --------->ALFIN1      ------->TEIL             <-----------TBP       <---------ETT(2)     <---- --->GT1      ---------->DOF2 *TSS                   --------->AHL20(2) --------->ALFIN1    ---------   aaaataatgtggtgaagaaagggtttgatgaatttttggggtttgtgagatttgtttatataaagagagaagatgtgtcgacaatgagaaagactccaat  12792200                                        --------->AHL20(2)                                     <------ZmHOX2a(1)                                     ----------->GT1                            <---------AHL20(2)                            --------->AHL20(2)                                                    <--                           <---------AHL20(2) ----------->GT1                                     <--                        <---------AHL20(2)   ----------->GT1            <---------TOE1(3)         ---                    <---------DAG2  ----------->GT1                     <---------TOE2(3)         <-- -----DAG2          <----------DOF2<---------TOE2(3)                   <---------DOF5.7(2)   <------- --->CBF         <-----------GT1   <---------TOE1(3)  <-----------GT1  ---------->DOF2   <----------DOF2   ttttgtttttgttttcttataactttttatttatttgaaggataaaatgggtaattttgctgtttttttgggttaaagttgctgtttaatacttttggtt  12792300                                                     --------->ANAC58                                                     --------->ANAC58                                               ---------->DOF2                                           --------->ANAC58                                           --------->ANAC58                                           --------->ANAC46      <---------ANAC55(2)                 ------->TEIL                                   --------->ATHB51      ----------->GT1                    <---------ALFIN1   <---------AHL20(2)        --------->TOE2(3)      <---------ANAC46                 --------->ANAC58    <---------AHL20(1)         --------->YAB1 -------ANAC46                         --------->ANAC46    --------->AHL20(2)         =============== -------ANAC58                    ----------->HVH21  ----------->GT1                  --------------- ------>ANAC55(2)                <-----------HVH21   <---------ANAC55(2)         <----------DOF2 -------ANAC58                  --------->ALFIN1     --------->ANAC55(2)<----------ID1<-------------- --MYB46(3)           <-----------HVH21--------->ANAC58    <---------AHL20(2)    <---------DAG2   <--   acgttgttaagtgaaaacaaaattggtcagaaatgtgtgacacgcacgctaaagtaagtaataaaattttaagaagaacaaaactttaccataatttgtt  12792400                                         <---------AHL20(2)                                        <---------AHL20(2)                                        --------->AHL20(2)     <---------YAB1                           --------->AHL20(1)          --------->ANAC46                           <---------ARR11(3)          --------->ANAC58                             -                           <---------AHL20(1)          --------->ANAC58                             -           <---------ANAC58--------->AHL20(2)   --------------->AGL15                         <------ ===============================================================MADS_MADS                     <------ >AGL15    <---------ANAC46--------->ARR11(3)   <---------------AGL15              <---------ANAC58 - -AGL15    <---------ANAC58<---------AHL20(2)   ------>ZmHOX2a(1)                  <---------ANAC58 - ---------GT1         <---------TOE2(3)<---------WOX13(1)    --------->YAB1  ------->TEIL  <---------   tcaccatttcaattcgtgtaagttaagaatatatttctctgatttatttcctaatataagcaattgtgataagaagatgaatatttcttggtttttcctt  12792500                                                         ------->GAMYB                                                         --------->TOE2(3)                                                       ------>MYB83                                                       ------>MYB46(1)                                                       -------->P                                                      --------->MYB55(1)                                                     <---------MYB55(2)                                                     <---------MYB59                                                     <---------MYB111(1)                                                     --------->MYB46(3)                                  <---------ANAC58   <---------MYB46(2)                             <---------ICU4          --------->AtMYB61   ------->TEIL         --------->AHL20(1)           <---------MYB111(2) -------->ANAC58        <---------AHL20(2)          --------->MYB46(3) -------->ANAC46        <---------AHL20(1)         -------->P                           <---------ANAC58 ---ANAC58             --------->YAB1          <-----------ARR10            ------>MYB46(1) ---ANAC58             --------->AHL20(2)      --------->ARR14(2)           ------>MYB83<---------ANAC58 -------->ANAC58------>MYB83<-------TEIL       <---------ARR14(2)        --------->ANAC58 -------->ANAC55(2)    <---------AHL20(2)      --------->GLK1(2)         --------->ANAC58 --GT1          ------>MYB46(1)   <---------ANAC58<-----------GT1       ------->TEIL    <---------ANAC46   gcacgtaccaagtataccaactaaattatattcatttcttactatggagaatctaccaaccccaatgtattatgcaccaaatacaatatttcttgaaatt  12792600  Previous    Next  AGI:  At2g29980.1    Description:  FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase. Identical to Omega-3 fatty acid desaturase, endoplasmic reticulum (FAD3) [Arabidopsis Thaliana] (GB:P48623); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to Omega-3 fatty acid desaturase, endoplasmic reticulum (GB:P48624); similar to omega-3 fatty acid desaturase [Descurainia sophia] (GB:ABK91879.1); similar to omega-3 fatty acid desaturase [Brassica napus] (GB:AAT09135.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase, type Range:  from: 12788668    to: 12792130    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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