Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                         --------->MYB46(3)                                                 ---------                        >>>>>>>>>MYB98                                     --------->MYB52(1)      <-               ---------->DOF2                --------->ARR11(3)      ---------->DOF2    --------->YAB1 -------YAB1  --------->AtMYB61               <---------ARR11(3)  --------->YAB1--------->ALFIN1 ----   aacattgacaacaaaaccaaagccctaacaaacaaaaatcgatttgaagaacttactgggactctcaaacatgaaagtaacagtgtcgctaccatcatca  12658400                            <---------ALFIN1                           <---------At4g35610                         --------->HSFB2a(2)                   <---------ICU4                                                                   -             --------->bZIP60(1)                                                                    - -ICU4       <---------bZIP60(1)                                                                    - >YAB1    <---------YAB1 <---------HSFB2a(2)                                      ------>ZmHOX2a(1)<- ---------DOF2    <---------YAB1       <---------ARR11(3)                     <---------ARR14(2) ---- ----->At4g35610--------->YAB1       <---------At4g35610     <-------TEIL     --------->ARR14(2) <---   gctttgatggtgatgatatcatcatttccagcacatttcagcatcttagacatattaccaagattcattcccatagagaggttcctatcgcatctatagt  12658500              ------>ZmHOX2a(2)             <------ZmHOX2a(2)             --------->CCA1(2)            --------->ARR14(2)            <---------ARR11(3)              <---------ANAC46            <---------ARR14(2)         --------->O2            --------->ARR11(3)         <---------bZIP60(2)            <---------AGP1             <---------O2           <---------CCA1(2)        --------->ANAC46       <-----------HVH21          --------->ANAC58      --------->TOE1(3)           --------->ANAC58 -------->ANAC58 --------->ANAC46 --------->ANAC46 -------->ANAC46 --------->ANAC58------>MYB46(1)         <---------ANAC58 -------->ANAC58 --------->ANAC58------>MYB83            <---------ANAC46          --------->MYB46(3) --------HSFB2a(2)   ---------->DOF2----------->HVH21    <---------ANAC58   <---------MYB46(3) ----->ZAT18<-----------ARR10  --------->DEAR3(1)--------->ARR14(2)        --------->ALFIN1 ------ZAT18--------->AGP1     --------->AtMYB61 <---------ARR14(2)        <---------AtMYB61   gctcgaaaccttcagatctaagcaaaagagacaccaacgcgacatggctcgaatccatagcttgaagcgagaaccctgtggtcgaacagtcgaagttcgc  12658600                        --------->HSFB2a(2)                 -------->ZAP1                <---------At5g28300               <---------WRKY18(1)              ----------->HVH21              --------->WRKY45              --------->WRKY12              --------->WRKY38(1)            <----------DOF2           ------>ZmHOX2a(2)          <------ZmHOX2a(2)                                           <---------ARR11(3)         --------->ARR14(3)                                   --------->ZAT2 --------->LBD16         <---------ARR14(3)                                   --------->At4g35610         --------->ARR11(3)                                  ------->TEIL   <---------HSFB2a(2)         --------->ARR14(2)  <---------HSFC1(2)           --------->ANAC46  --------->HSFB2a(2)         <---------ARR11(3)  --------->HSFB2a(1)        --------->MYB52(1) <---------LBD16         --------->AGP1 <---------HSFB2a(2)        XXXXXXXXXXXXXXXXXXXX>MIR159A         <---------ARR14(2)  <---------HSFB2a(1)   XXXXXXXXXXXXXXXXXXXX>MIR319A/B         <---------AGP1 <---------HSFC1(1)         XXXXXXXXXXXXXXXXXXXX>MIR319C        <---------CCA1(2)    --------->HSFC1(2)   XXXXXXXXXXXXXXXXXXXX>MIR159C        <---------ARR14(1) <<<<<<<ZML2         --------->TOE1(3)      --------->ARR11(3)  --------->WRKY38(1)   --------->HSFC1(1)     --------->TOE2(3)   ----------->RAV1(1)     --------->DAG2 --------->DOF5.7(2) <----------DOF2         --------->GLK1(2)<---------At4g35610  --------->ICU4   -   atcgttcaccagatctttgaccgcttctagaaccttcttcagtagagaaccttgaactaaacgaagctccaacatcttctgggaaattatcgaaaggtta  12658700                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                           --------->GLK1(2)                                                                                          --------->ARR11(3)                                                                               --------->YAB1      --                               <---------MYB46(3)                      ----------->GT1    <---------ARR11(3)                  <---------TOE2(3)                               <---------ANAC46      ----------->ARR10                  <---------TOE1(3)        <---------HSFB2a(2)   --------->At4g35610--------->At4g35610          ------------>MYB.PH3(1)          --------->HSFB2a(2)   <---------LBD16*TSS<---------At4g35610          --------->MYB52(1) <---------At4g35610 <------ZmHOX2a(1)<---------LBD16   --------->ZAT2--- ---------->GT1<---------MYB52(1)         <---------LBD16  --------->ICU4     <---------YAB1  <------   gagtgtgaatcgaaacggttagggtttttagagctgttgaaatttctgggaggagattgcaattgttagcgggaagtgatattataagctgagattttgt  12658800                                                                                        <---------ZAT14                                                                                        <---------ZAT18            <----------DOF2               ----------->TGA1                              --------->ZAT14 <------NtERF2                            ----------->HVH21                         --------------->AtSPL8 ----->NtERF2                         <---------ANAC46                              --------------->AtSPL3 --------PCF2                    ------>NtERF2                             ----------->GT1 --------bZIP60(1)               --------->LBD16                         <------------CBF      ------ ------->bZIP60(1)              --------->ANAC46          --------->At4g35610     <-----------GT1 ------>RAP2.3(1)              <---------LBD16         <---------YAB1 --------->ANAC55(2)   --------- -----RAV1(1)    <---------TOE2(3)----------->RAV1(2)--------->YAB1   <---------ANAC55(2)--------->ANAC46   ggcgccatttagcgattttagggtatttttgttcccgcctgtgtgtgacgatgaattatcatctgtgtgagtccgtattgtttatttcagtacaccacca  12658900                                                             --------->ZAT2                                                             <---------ZAT2                                                             --------->At4g35610  --------->LBD16                                                             <---------At4g35610 --------->ANAC46                                                          --------->At4g35610    --------->LBD16                                                          <---------At4g35610   --------->HSFB2a(2)                                                         ------->GAMYB       <---------GLK1(1)        <----------DOF2                                 --------->MYB46(3)  --------->ARR14(2)     <---------TOE1(3)                                 ---------->DOF2      <---------GLK1(2) <----------DOF2                 <----------ID1       --------->MYB52(1)---------->DOF2 <---------DAG2              <------------CBF         ----------->RAV1(1)<---------TOE2(3) --->AtMYB61               <---------AHL20(2)         <---------ALFIN1<---------YAB1 >AtMYB61                 --------->AHL20(2)      ------>NtERF2----------->GT1  <---------HSFB2a(2) *TSS   tcactttaagctttcttatttcatgggtttaaattgggccaaacaaacattcggcccaacagcagctgtaatattaaagattcccgaaaaaatcgaaacg  12659000                                                               <---------TOE2(3)                                                          <---------ICU4                                                          -------->ATHB1                                                          --------->ATHB12                                                         --------->ICU4                <---------TOE1(3)                        <---------ATHB12                <---------TOE2(3)                  <---------HSFB2a(2)          <---------------AGL15                    --------->HSFB2a(2)    --------->GLK1(2)                          <---------GLK1(1)    <-----------ARR10                          --------->GLK1(1) <------ZmHOX2a(1)      <---------ANAC46    --------->ARR14(2)           --------->HSFB2a(2)   --------->GLK1(1)         <------ZmHOX2a(1)    <---------ARR14(2)           <---------HSFB2a(2)--------->LBD16              ====================   <---------GLK1(1)      <---------ANAC46 >>>>>>>>>TBF1 <---------YAB1        --------->MYB59   agagcaaatctgctcttcaaggtaatcttcgtgttcgagactgaagaagaaatccagaaatcattgaggaaggaagagaattaggaaatggcgcatagaa  12659100                                                                                            <--------                                                                                            <--------                                                                               --------->O2 ---------                                                                               <---------TGA1a                                     <---------GLK1(1)                         <---------ANAC58                                  <---------YAB1                               --------->TGA1a                             --------->HSFC1(2)                                <---------O2<---------KAN4(2)                    <---------MYB46(3)     --------->WOX13(1)                  <---------ANAC55(1)                   <---------WOX13(1)--------->GLK1(1)                         --------->ANAC55(2)          <---------O2       <---------HSFC1(2)                                <---------ANAC46          --------->O2       --------->HSFB2a(1)         <---------ANAC58      <---------ANAC55(2)       <------ZmHOX2a(2)     <---------HSFB2a(1)         <---------ANAC58      <---------ANAC58      <---------ARR11(3)     --------->KAN4(1)  --------->At4g35610         ------>ZmHOX2a(1)--------      --------->ARR11(3)     <---------KAN4(1)--------->YAB1              <---------ICU4   ---------- =============HOX2a_HOX2a   <---------KAN4(2)<---------ATHB12      ----------->HVH21    ----------->GT1   tactgagagatcacgaggctgatggatgggaacgttctgatttcccaatcatctgtgagtcttgtctcggtgacaatccttacgtgagaatggtatattc  12659200                                                                                     ------>ZmHOX2a(2)                                                                                    --------->GLK1(1)                                                                                    <---------GLK1(1)                                                                                    <------ZmHOX2a(2)                                                                                   <---------ARR14(2)       <---------TOE1(2)                                         <-------TEIL      --------->ARR14(2)       <---------TOE2(2)                          --------->ARR11(3)               --------->ARR14(3)      ------>ZmHOX2a(1)                           <---------ARR11(3)               <---------ARR14(3) -KAN4(1)                                 <---------MYB52(1)<-----------GT1        --------->ARR11(3) --TaMYB80                               <----------DOF2   <-----------GT1         <---------ARR11(3) >KAN4(1)                          <---------ANAC58  <---------AHL20(2)            <-----------ARR10 ->KAN4(2)                     <---------GLK1(1)  <---------GLK1(2)        --------->ICU4         --- >TaMYB80        ------>ZmHOX2a(1) <---------ANAC58<---------RVE1(1)      <----------DOF2<----------DOF2   ttcgcttcctatgtttctcctcaaacaaattcgatttccttgcctttagctagatttttttttaacattcatgtgtctttattaagatctcctttcattt  12659300  Previous    Next  AGI:  At2g29570.1    Description:  PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2); DNA binding / DNA polymerase processivity factor. Identical to Proliferating cell nuclear antigen 2 [Arabidopsis Thaliana] (GB:Q9ZW35); similar to PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN), DNA binding / DNA polymerase processivity factor [Arabidopsis thaliana] (TAIR:AT1G07370.1); similar to Proliferating cell nuclear antigen (PCNA) (GB:Q43124); contains InterPro domain Proliferating cell nuclear antigen, PCNA; (InterPro:IPR000730) Range:  from: 12656983    to: 12658780    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g29580.1    Description:  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G07360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21518.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 12659000    to: 12661413    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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