Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ANAC46                ------>ZmHOX2a(2)               <------ZmHOX2a(2)               --------->CCA1(2)              <---------AGP1              --------->ARR11(3)              --------->ARR14(2)              --------->AGP1              <---------ARR11(3)              <---------ARR14(2)             --------->RVE1(1)    <---------AHL20(2)          ---------->DOF2        --------->AHL20(2)                                      ----------->GT1       <---------ANAC58 <---------YAB1                                                --------->At4g35610       <---------ANAC58 --------->ANAC58                                              <---------At4g35610       <---------ANAC46 --------->ANAC58                                 <---------bZIP60(1) <---------AHL20(2)   --------->YAB1<-----------GT1                      --------->bZIP60(1) -------->AHL20(2)    <-----------GT1        <---------ICU4      --------->TOE2(3)    <---------ZAT2   taataaatggcttaaagatctgaatcacgatacaatttaaaccctaagcattgcaaaaacattgaaacctatatgtcatcacagagacagctagaaaaac  12649200                                   <---------DAG2                                   <----------DOF2                             ====================================HOX2a_HOX2a                             ------>ZmHOX2a(2)                --------->ANAC58                            =====================================HOX2a_HOX2a                      <--                            <------ZmHOX2a(2)                 --------->ANAC58      --------->TOE2(3)                           --------->ARR14(2)             <------ZmHOX2a(1) --------->GLK1(2)    <---                           <---------ARR14(2)            <----------ID1     ------->TEIL        -----                           <---------ARR11(3)         ---------->DOF2      ------>MYB46(1)     ------    >>>>>>>>>>>>>>>>>LFY   --------->ARR11(3)     --------->ZAT6           ------>MYB83        ------ <---------At4g35610   ---------->DOF2           <---------TOE2(3)       <---------MYB59      ------- --------->At4g35610 <------ZmHOX2a(2)          <-----------GT1       <-----------GT1------>ZmHOX2a(1)   ttaagcttccattgtctaattagatcaaagatcggagctttacgatgtattaacaataaaggacgagcaaataaaccgaacctgttccttagtaacgccg  12649300                                                    ----------->GT1                                                --------->ATHB12                                                <--------ATHB1                                                <---------ICU4                                                -------->HAHB4       <------ZmHOX2a(1) --------->ZAT6        <---------ATHB12 -------ANAC46           --------------->AtSPL3--------->ICU4 ---NtERF2 --------->ANAC58                   <---------TOE2(3)                                ------ ->NtERF2  --------->ANAC58                 <---------AHL20(2)                                ======= --->DEAR3(1)            --------------->AtSPL8<---------YAB1                                 <------ZmHOX2a(2) ----->HVH21      <---------AHL20(2)        --------->AHL20(2)         <---------YAB1        -------- -->RAP2.3(1)     --------->AHL20(2)       --------->AHL20(2)      <----------DOF2           <-------   acgggaataggagaagccatttttttagcagtacctgaatacaaaattaatgattcgtaaaaatcgaaactttataattcatacttgaatttgaagatca  12649400                                                                                  <---------TOE2(3)                                      ---------->DOF2                      --------->RAP2.6(2)                            --------->REM1(2)                             <-----------------AG        <----------DOF2  <---------ANAC55(2)                             <---------At4g35610    ------>ZmHOX2a(1)    <---------ANAC58                                --------->At4g35610   --------->TOE2(3)     <---------ANAC58                               --------->DEAR3(1)  <---------ICU4         <---------ANAC46                            <---------ALFIN1 --->YAB1*TSS         --------->GLK1(1)                      <----------DOF2      <---------TOE1(3) ==========HOX2a_HOX2a<---------GLK1(1)        ----------->RAV1(1)  <---------ZAT14 ->ARR11(3) <---------------AGL15  ----------->GT1---------->DOF2   <---------REM1(2) --ARR11(3) ================================================================================MADS_MADS   taaatccttactttctcaaatgggatttcgtgaagagaggtaaagaacacaacaaaggcttctcttttgctacacagccgaattagggtttaagagacat  12649500                --------->ANAC58                --------->ANAC58        --------->TGA2(2)       <-----------HVH21       <-----------TGA1      --------->ANAC58      --------->O2      --------->bZIP60(2)      --------->ANAC55(2)      <---------ANAC55(2)      --------->ANAC46      --------->ANAC58      =======================bZIP_DOF      =======================bZIP_DOF      <---------bZIP60(1)      --------->bZIP60(1)      <---------TGA1a      <---------O2      --------->TGA1a                                                        ------>NtERF2     <-----------STF1                          <---------ARR14(2)           --------->DEAR3(1)     <-----------bZIP910(1)                    <-----------ARR10           --------->ATERF1(1)     ------>NtERF2                             --------->GLK1(2)           --------->RAP2.3(1)    <---------ALFIN1                           --------->ARR14(2)          <------NtERF2 --------->ANAC58                             --------->RVE1(1)            --------->ORA47(2) --------->bZIP60(2)                      ---------->DOF2                 <---------ATERF1(1) <------ --------->ANAC55(1)                  --------->ANAC58              ---------->DOF2      <----------DOF2 --------->ANAC58                     --------->ANAC58        --------->ANAC46     <---------ATHB12 --------->ANAC46 ---------->DOF2   <-----------GT1  <---------At4g35610 <---------DEAR3(1)   <------   tacacgccacgtcatcaaacgaaagggtatagatgtaattacgctaaagtatctgagcttctccacgactaaaagtcgccgactaatcaagcttttaggg  12649600                     <---------ARR14(2)                     --------->ARR11(3)            --------->At4g35610                     <---------ARR11(3)            <---------At4g35610          <---------YAB1   <----------DOF2  <---------DAG2 ---TOE2(3)          --------->ARR14(2)     <----------DOF2                        <-----------RAV1(1) ---TOE1(3) <------------CBF    <-----------GT1 *TSS                             <----------DOF2   ttttagcaaatttctattggaggtatcttctttcttactctctcaactttttttgctgaaattttcttcaatttcgagtttttctttgtgggtttgttta  12649700                                                    <---------ANAC46                                                  <---------MYB46(3)                                                 <---------AtMYB61                                                 --------->ALFIN1                                               <------MYB83                                               <------MYB46(1)                                              <---------AtMYB61                                              --------->MYB111(2)                                  --                                              --------->MYB111(1)          <------ZmHOX2a(1)      ---                                              <---------MYB46(3)         --------->ANAC55(2)      <--         <----------DOF2                      --------->MYB55(2)         <---------TOE1(3)        ---    ---------->DOF2          <----------DOF2 <--------P                  <---------TOE2(3)      -----   gctattcaaagctttcaattgaagtcgttctctttctgtgttttctagttggtggtggatttttgattttgagttaaggaattgagtagcaagaaggtga  12649800               --------->DOF5.7(2)             --------->MYB52(2)            <-------TEIL           <---------MYB52(1)        --------->ANAC58        --------->ANAC58 ------->CCA1(2)                            <----------DOF2 ------>ARR11(1)                            <---------DAG2      <---------ALFIN1     <-------TEIL -------ARR14(2)      ------->TEIL     --------->DOF5.7(2) <------ZmHOX2a(2)       <---------GLK1(2) ------>ARR11(3) <---------DOF5.7(2) <---------ANAC46     --------->ARR11(3)   <---------MYB52(1) ------>ARR10<---------MYB46(3) <---------YAB1            <---------ARR11(3)  <-------GAMYB   gatatggagcacggttcgttcacgaatgttagtcatgcttcgtttactttatcggaagaagatcacacacttgctaatgctgttagattcgtcttaaacc  12649900                <----------DOF2        <---------ANAC46       <-----------ARR10               <---------ANAC55(2)       <---------ARR11(3)           <---------MYB52(1)       --------->ARR11(3)      ------->TEIL  --------->AHL20(2)             ---------->DOF2       <---------ARR14(2)------>ZmHOX2a(1)   <---------AHL20(2)    <-----------HVH21    <----------DOF2       --------->ARR14(2)<----------DOF2  ------->TEIL            <----------DOF2 <----------DOF2   aagagtaagtatcttcttctttcaatccttttgaatctgttatgtatatatatagaagaagctatacactttcacagagaaaggctttagctttataatc  12650000                                                                ------->TEIL                                                  <---------------AGL15                                       <-------TEIL       <------ZmHOX2a(1)                               --------->ATHB12   --------------->AGL15             <----------DOF2                        --------->GLK1(2)        ----------------->AGL1         <-----------GT1                       <---------GLK1(2)         <-----------------AGL1       <----------DOF2           ----------->HVH21  <---------YAB1     --------------->AGL15  <---------ANAC58         <---------ANAC58     --------->ICU4     <-----------------AG   <---------ANAC58     <-------         <---------ANAC58  <---------YAB1        ----------------->AG  -------->P  --------->TOE2(3)   tcatacttagttcgtgacactctcaaattctgattattgagttcatagtttccctcattaggaatgaatctcttacctgtctttacctttgtttttggtt  12650100  Previous    Next  AGI:  At2g29530.1    Description:  TIM10 (Arabidopsis thaliana translocase inner membrane subunit 10); P-P-bond-hydrolysis-driven protein transmembrane transporter. Identical to Mitochondrial import inner membrane translocase subunit Tim10 (TIM10) [Arabidopsis Thaliana] (GB:Q9ZW33); similar to unknown [Populus trichocarpa] (GB:ABK93344.1); contains InterPro domain Zinc finger, Tim10/DDP-type; (InterPro:IPR004217) Range:  from: 12647877    to: 12649409    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g29540.1    Description:  ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit); DNA binding / DNA-directed RNA polymerase. similar to ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT3G52090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21538.1); contains InterPro domain DNA-directed RNA polymerase Rpb11, 13-16 kDa subunit, conserved site; (InterPro:IPR008193); contains InterPro domain DNA-directed RNA polymerase, RBP11-like; (InterPro:IPR009025); contains InterPro domain DNA-directed RNA polymerase, dimerisation; (InterPro:IPR011261) Range:  from: 12649648    to: 12651021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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