Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                              <------                                                                              <---------ARR14(2)   <-                                                       <----------DOF2        --------->ARR14(2) <---                                          <---------AHL20(2)                  <---------TOE1(2)  <---                                        <---------AHL20(2)                <-------TEIL       <-------                           --------->GLK1(2)<---------AHL20(2)         <---------ANAC58      <-------                           --------->ARR11(3)     <----------DOF2      <---------ANAC58     <--------          --------->MYB52(2)           --------->AHL20(1)             <---------------AtSPL8<-------- -------RAV1(1)<---------ANAC46        <---------AHL20(1)        ----------->HVH21         --------->ICU4 ->ZmHOX2a(1)  <---------ANAC58       <---------AHL20(2)         <---------YAB1  <-----------GT1 <--- ---->RAV1(2)  <---------ANAC58----------->GT1 <-----------GT1 <---------At4g35610  <---------ANAC46   gttgggagggtttagttgcttcttcaaataatcttgttatatatatttttttcttttcttttctcttctgatggggttcgtattttctgtgtaattacgg  12645000 ------->ALFIN1 ---RAP2.6(2)                                                   <---------At4g35610 -----NtERF2                                        <---------ARR11(3) ------ANAC58                                       --------->ARR11(3) ------ANAC46       ----------->GT1                 --------->ARR14(2) --At5g28300 --------->TOE2(3)                      <---------ARR14(2) --LBD16    <---------ANAC55(2)                    --------->GLK1(1) -ICU4      ----------->GT1                       <---------KAN4(2) ---GT1     <---------ANAC46 ----------->GT1      ---------->TaMYB80  --------->YAB1          <------ ------ANAC58--------->TOE1(3)          ---------->ID1         <---------TOE1(3)<---------TOE1(2)  <<   cgtggaagtagattacgttaaatagagaaatttgtgaaacttgttgtaatcgaatatccacatttaagctaataaaaactcttatgttcttgacttcttt  12645100                        --------->ANAC55(2)             --------->TOE2(3)                    <---------ARR11(3)                  <----------DOF2                    --------->ARR11(3)               <-----------GT1                   --------->YAB1                 <---------MYB46(3)                               --                  --------->ICU4                <-------GAMYB                                    <---                  <---------YAB1         <---------ANAC58                            --------->TOE2(3)                --------->YAB1           <---------ANAC46                            --------->TOE1(3)              <---------At5g28300     <-----------RAV1(1)                            --------------->AGL15       --------->YAB1   <---------ANAC55(2)<---------ZAT6                            <---------------AGL15 ----DOF2<---------YAB1 ----------->GT1  <---------ANAC58                   ----------->GT1      ---- <<<<<<<TBF1 --------->YAB1   --------->TOE2(3)--------->MYB52(2)       <---------YAB1  --------->AHL20(2)   cttcttcaattacaattaccatgatcatgtaacataaactctgtcgtgttagttgttactttagtagtttagttagcattgttaaaaccataaaatgcaa  12645200                                                                                             --------                                                                                             <-------                                                                                          --------->REM1(1)                                                                                          --------->ANAC46                                                       --------->ARR11(3)                --------->ZAT14                                                       <---------ARR11(3)                <xxxxxxxxxxx                                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxx                                                     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ZAT14                                                    <xxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)         <xxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxx                                                  <xxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxx                                           --------->ARR14(2)                          <xxxxxxxxxxxxx                                          <------ZmHOX2a(1)    <---------ANAC46        --------->ANAC46                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                  <xxxxxxxxxxxxx                                        <---------TOE1(2)<---------DAG2              <xxxxxxxxxxxxxxx                                        <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxx                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                  <xxxxxxxxxxxxxxx                                       <-----------RAV1(2)<----------DOF2           <xxxxxxxxxxxxxxxx                                     <xxxxxxxxxxxxxxxxsmallRNA(s)           --------->ANAC55(2)   <--                                    ------>NtERF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxx                                    <xxxxxxxxxxxxxxxxsmallRNA(i)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->REM1(2) --------->MYB46(3)                                   <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ANAC55(1)  <xxxxxxxxxxxxxxxx                                 --------->At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxx                                 <---------At4g35610<xxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxx                                 --------->ZAT2   <xxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxx                             --------->ALFIN1------>ZmHOX2a(2) <---------AtLEC2    <xxxxxxxxxxxxxxxxx   --------->ANAC58     ---------->DOF2<---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)---------   --------->ANAC58  ===============================HOX2a_HOX2a<---------ANAC58    <xxxxxxxxxxxxxxxxx ---------->DOF2     <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------->TOE2(3)    <----------ID1<xxxxxxxxxxxxxxxxsmallRNA(s) <---------ANAC58    <xxxxxxxxxxxxxxxxx ------ATHB12      ----------->GT1--------->ATERF1(1)<xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxx ----->ICU4    ---------->DOF2   <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------   acattaagcaaaaaaaaaaaagaggaaaaagatggtgctgcccaggatcgaactggagaccttttgcgtgtaaggcaaacgtgataaccactacaccaca  12645300     *TSS ->AtMYB61 --ALFIN1 xxxxxsmallRNA(fl3) xxxxxsmallRNA(si3) xxxxxsmallRNA(le3) xxxxxsmallRNA(se3) xxxxxsmallRNA(fl3) xxxxxsmallRNA(fl3) xxxsmallRNA(le3) xxxxxsmallRNA(le3) xxxxxsmallRNA(se3) xxxxxsmallRNA(le3) xxxxxsmallRNA(se3) xxxxxsmallRNA(fl3) xxxxxsmallRNA(fl3) -------ALFIN1 xxxxxsmallRNA(se3) xxxxxsmallRNA(se3)                                               <---------ANAC58 xxxxxsmallRNA(se3)          --------------->AGL15                <---------ANAC46 xxxxxsmallRNA(si3)          <---------------AGL15                <---------ANAC58 xxxxxsmallRNA(i2)<---------YAB1  ---------->DOF2          <---------AtMYB61      --------->DAG2   -- xxxxxsmallRNA(si3)          ===============================================================MADS_MADS >ANAC46      <---------GLK1(2)<-----------TBP           <----------DOF2         --------->DAG2   --- xxxxxsmallRNA(se3)    <---------AHL20(2)               <---------ANAC58        ---------->DOF2   --- xxxxxsmallRNA(fl3)    --------->AHL20(2)               <---------ANAC58    <---------------AGL15 <-- xxxxxsmallRNA(fl3)   --------->AHL20(2)          <---------GLK1(2)       --------->ZAT18   <-------- --->ANAC46   <---------ARR11(3) <---------AHL20(2)<------------CBF    <------------CBF     ------>ZmHOX2a(1)   gcaccttgctgttcaagattatcatttaattctatataaagtttagaatacagaattggctttggtttgcgtagattgcacaaaaaggtgagtcctttct  12645400                                                                                       <------MYB46(1)                                                                                       <---------ORA47(2)                                                                                       <------MYB83                                                                                      <---------MYB46(3)                                          --------->ATHB12                            --------->MYB46(2)                                      --------->ATHB51                                <---------DREB2C(2)                                      -------->ATHB1                                  --------->MYB111(1)     ------->GAMYB                    --------->ATHB12                --------->At4g35610    --------->ANAC58                 <---------YAB1  --------->ARR11(3)               <---------DEAR3(1)    --------->ANAC58                 --------->ICU4  <---------AHL20(2)               --------->MYB55(2)    --------->ANAC46                 --------->AHL20(1)               <---------At4g35610 <---------ZAT18 ---->NtERF2                         <---------AHL20(2)             <-----------RAV1(2)<---------DEAR3(2) -------->HVH21                      <---------ATHB51<---------AHL20(1)               <---------DEAR4(1) ------>ANAC46                 *TSS<---------ICU4    --------->AHL20(1)              <--------P   <-- -------ETT(1)            <---------ARR14(2)         --------->AHL20(2)              <---------ORA47(1) --DOF2---------->DOF2    --------->ARR14(2)         <---------ARR11(3)             <-----------HVH21   ccgacaacgcaaagactcatttgaatcggttccttcaaaattattgatttgggaatatattcttgtcaattcaggtgaatcaaactggtcggtgcaattc  12645500                     <------NtERF2                    <---------LBD16                                       <---------At4g35610                   <---------LBD16                                        --------->At4g35610      --                   --------->ETT(1)                                       --------->ZAT14          --                   <---------ANAC46                                       <---------ZAT14          --                 <-----------HVH21                                  ------>ZmHOX2a(2)        --------           --------->ARR14(2)                                     --------->ARR11(3)      --------->KAN4(2)           <---------ARR14(2)------->TEIL         ---------->DOF2 <---------ARR11(3)    <-------TEIL -------YAB1    <-----------RAV1(1)      <----------DOF2--------->At4g35610         <---------TOE2(3)   aagattgccctcgtatttgtgtcggggaatgaaactgttctgtctttcttacaaaagcagttgcatttgatcttgctgcagagattaatgttcattctca  12645600                              --------->HSFB2a(1)                              <---------HSFC1(2)                              <---------HSFB2a(1)                              <---------ZAT2                              <---------At4g35610                              --------->HSFC1(2)                         <---------GLK1(2)                         <---------HSFB2a(2)                          --------->YAB1                         --------->HSFB2a(2)                       --------->WOX13(1)                        ------>ZmHOX2a(2)                        <---------MYB52(1)                        ==================HOX2a_HOX2a           --------->TOE2(3)  <-----------GT1   --------->WRKY38(1)                       <---------TOE1(2) ------->YAB1       --------->WRKY12 <---------TOE2(3)       ------>ZmHOX2a(1) ------->TOE1(3) <---------ANAC46    <---------TOE1(3)     <---------ANAC58                      <--- ------->TOE2(3)<---------TOE2(3)  ------>ZmHOX2a(1)       <---------ANAC58              ---------->DOF2 ->TOE2(3)   <----------DOF2 ----------->ARR10---------->ID1--------->TOE2(2)      <----------DOF2   atcttaaccatgccggtttacgttgatcgcgaagctcctaaggtttttgttcttctgtttttcctgcgttaatcagagtctctctcttttcaaaagataa  12645700                                         <---------ANAC58                                         <---------ANAC46                                   ---------                                         <---------ANAC58                                   <--------                           <---------ANAC58                                                 ---------                           <---------ANAC58     ------->TEIL        ------->TEIL            <-------- ------TOE2(3)  <---------YAB1         <---------ANAC46       <----------ID1      ----------->RAV1(1)   atgttgaaattgtttagtttgatagttatgcgtccatggttttgtgtgtgtatgtgaagctatggagacgaatttactcagaagcgacattagaagcttc  12645800                                                      --------->At4g35610                           -                             <---------ANAC58         <---------At4g35610                           -                             <---------ANAC58   <-------TEIL                           <----------DOF2 >HSFC1(2)         <---------ANAC58            <---------ARR11(3)                      <---------DAG2 -HSFB2a(1)        <---------ANAC58           <---------GLK1(2)                       <---------ANAC58 >HSFB2a(1)       <---------HSFC1(2)        <---------TOE1(3)           <---------TOE2(3)--------->ATHB12 -HSFC1(2)        --------->HSFC1(2)       <-----------RAV1(2) <----------DOF2        <---------ANAC58   tcttcttgctgaaaaatggaagcttgttcttgctggacttgtatttcaggttcttaagcttccttctttgtgtttagattatagtcttgctttattggtg  12645900  Previous    Next  AGI:  At2g29510.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21541.1); contains InterPro domain Tubby, C-terminal (InterPro:IPR000007) Range:  from: 12641591    to: 12645095    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g29520.1    Description:  pre-tRNA. tRNA-Val (anticodon: TAC) Range:  from: 12645233    to: 12645305    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g29525.1    Description:  similar to phosphatidic acid phosphatase-related / PAP2-related [Arabidopsis thaliana] (TAIR:AT3G54020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21540.1); contains domain PTHR21290:SF1 (PTHR21290:SF1); contains domain PTHR21290 (PTHR21290) Range:  from: 12645431    to: 12647897    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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