Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                 --------->AGP1 ------->GAMYB                                                                 <---------AGP1--------->ANAC58                        --------->ANAC58                         <---------ARR14(2)       --------->ANAC58                        --------->ANAC46                         <---------ARR11(3)       <---------ANAC55(2)                 <------ZmHOX2a(2)                               --------->ARR11(3)       --------->ANAC55(1)                <---------ARR11(3)                               --------->ARR14(2)       --------->ANAC46                --------->ARR11(3)  --------->ICU4   ----------->GT1      --------->AtMYB61         --------->MYB52(1)    ----------->GT1     --------->ZAT14--------->CCA1(2)       --------->ANAC58   --------->ANAC58     --------->ANAC58 ----------->GT1   <---------ARR14(2)  --------->ANAC46   --------->ANAC58  --------->TOE1(2)--------->GLK1(2)    --------->ARR14(2)  --------->ANAC58 --->AHL20(2)  --------->GLK1(1)  --------->YAB1  <<<<<<<ZML2   <---------CCA1(2)         --------->ANAC55(2)   aatacaagcacaaacagagatcacatacgaaatcagtaataatctgtaactagaacagtcaaatccagatctgaaaccacaacgcaatcgacacgaaacc  12619600                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)<-                                                                                <---------At4g35610--                                                                           --------->ANAC58       ---                                                                           --------->ANAC58       ---                                                                           --------->ANAC55(1)    ---                                                                           --------->ANAC46   -------                                                                          <---------LBD16     -------                                                  --------->ANAC58     ------>MYB83         ---------                     --------->AtMYB61            <----------ID1       ------>MYB46(1)     --------->ANAC55(2)                  <---------PCF5                  --------->ANAC58   <---------MYB111(1)   <---------ANAC55(2)              --------->DAG2                   --------->DEAR3(1)    <---------MYB46(2)   -----------             ---------->DOF2             <---------PCF5              <---------MYB59      -----------     --------->TOE2(3)  ----------->RAV1(1) ----------->RAV1(1)    ------->TEIL----------->ARR10<----   aattcaatctcaacataaagggaccacaacaatacaatacgatggaccacagacgacaaacacaaaatcaacctaacacggcagatactaatcccgtacc  12619700                       --------->ANAC58     <---------CCA1(2) --------->ANAC46 --------ALFIN1     --------->ZAT18 ------->REM1(1)    --------->ZAT14 --->MYB83          <---------ZAT18 --->MYB46(1)       <---------ZAT14 ----->P        --------------->AtSPL8 >TEIL          --------------->AtSPL3                                                            --- -->SPL7  <---------YAB1        <------NtERF2                                                    <--- >LBD16 --------->YAB1 --------->ANAC58                                                        <----- ---->AtSPL3    <---------------AtSPL8                                                         <----- ---->AtSPL8---------->DOF2--------->O2                                                      -------- -----MYB59<---------ICU4  <---------O2                                                      --------   tacacttgtatcataaatgcagtacactcaagtcgccagagaccgagaaacaaaaaacacgattcaatctctgaaaacaaaacaaaaaaaaaaaacgtag  12619800                                                      <---------ARR14(2)                                                    --------->LBD16                                                   ------->GAMYB                                                 ------>MYB83                                                 ------>MYB46(1)                                                 -------->P                                             ------>MYB46(1)                                             ------>MYB83                          ------->GAMYB        ---------->DOF2                   --------->HSFC1(2)                     ------>MYB83 ------>ARR14(2)                          <---------HSFB2a(1)                    ------>MYB46(1) ---ZmHOX2a(1)                            --------->HSFB2a(1)                   --------->MYB52(1) ----TOE1(2)                  <------ZmHOX2a(1)  --------->MYB52(1)<---------ARR14(2) ----TOE2(2)             --------->CCA1(2)<---------HSFC1(2)       --------->ARR14(2) ->TOE1(2)     --------->ANAC58          ------->TEIL --------->ARR14(2)        ----------->RAV1(1) ->TOE2(2)     --------->ANAC58      --------------->AtSPL8        --------->GLK1(2)   gaatcgcatacaaaggaacgcgacgagatagaggaatacgaagtaccttccaaccggattcaacgagagaatccatggataccaacagaagtagaaaaca  12619900                   --------->CCA1(2)                  <---------ARR14(2)                ----------->ARR10              --------->LBD16             <---------ANAC46             <---------DEAR3(1)            <---------LBD16            ------>NtERF2            <------NtERF2            --------->ATERF1(1)           ------>NtERF2           <---------ATERF1(1)          <---------DEAR3(1)          --------->ANAC46         <---------LBD16         --------->LBD16         ------>NtERF2         <---------At4g35610         --------->At4g35610        --------->ANAC46       <---------LBD16     ------>ZmHOX2a(2)    <---------GLK1(1)    --------->GLK1(1)   ------->TEIL<------NtERF2                                                              <---------At4g35610   <-----------ARR10                                                         --------->At4g35610   <---------AGP1 --------->ARR14(2)                            ----------->HVH21      ==============   <---------ARR14(2)                                           <----------ARF1        ---------->DOF2   --------->ARR11(3)                       ---------->DOF2   --------->ALFIN1    --------->GLK1(1)   <---------ARR11(3)         --------->ALFIN1       --------->ANAC58       --------->GLK1(2)   --------->ARR14(2)    <------NtERF2---------->DOF2--------->ANAC58  *TSS<---------GLK1(2)   cgatggatctccgcggcggagataggcagagagtgtgagagaaagagaaagagaaacgaaaactgtgtgacaagaaggaatctgaattctaaagctgatt  12620000                             ------->MYC3                          <---------ALFIN1                     --------->ZAT14                     <-------TEIL                     --------->ZAT18                     <---------ZAT18                   <-------PIF4                   ------->PIF4                   <-------MYC3                   <-------MYC2                   ------->MYC3                   ------->PIF5                   <-------MYC4                      <---------ANAC55(2)                   ------->MYC4                      --------->ANAC55(2)                  --------->O2                  <---------ICU4                  <---------TGA1a             ------>ZmHOX2a(1)                  --------->TGA1a            --------->TOE1(3)                  <---------O2               --------->TOE2(3)  <---------AHL20(2)                 ------------>OsbHLH66  <---------YAB1          --------->AHL20(2)                <------------OsbHLH66 <---------ICU4 <---------ANAC58            <-----------HVH21<-------MYC3  <---------YAB1<---------ARR11(3)    <-----------GT1<-------PIF5       <--------HAHB4 <---------ANAC58                          <----- --------->MYB52(2)------->MYC2      <---------YAB1<-----------GT1                    <-----------GT1 ===========================bZIP_DOF --------->ICU4<---------AHL20(2)    <------ZmHOX2a(1)  ---------   tgtttgtttctctccatcacacgtgcacacacatgtttcattattatccttaattacttgatatttttaattttaggaccatatagttttacatgtgaca  12620100                                                 <----------DOF2                                                 <---------DAG2                                                <---------ANAC58                                                <---------ANAC58                                           <---------ICU4    --------->ANAC46                      <---------YAB1    --------->ANAC58                   <---------ZAT6    --------->ANAC58                   --------->ICU4   ------>NtERF2                  --------->ANAC55(2)    <---------MYB46(3)                         < ----YAB1                 --------->ZAT18 --------->ICU4--------->ALFIN1  --------->DAG2            - -->HVH21    <---------AHL20(2)   <---------ANAC55(2)<-----------RAV1(1) ---------->DOF2        -----   attggcaccccatgttaaatttttgaagtgaacaatacgtagtgattatggctttatggtggtgaagagactaaaaaaagttttgaatttgggttctcct  12620200         ----------->GT1        <---------------AtSPL8<---------AHL20(2) <---------AHL20(2)           <---------YAB1 ---------AHL20(2)           <---------AHL20(1)                                                   <-- -------->AHL20(2)    --------->GLK1(2)                                   --------->YAB1  ----------- ->ZmHOX2a(1)     --------->YAB1                           <---------ALFIN1            --------->CCA1(2)   aaataaatagagagtacaaatgagaatctaatattattcagagagaagactaaaaacacacacacattttagacaaacatagatgtgagagatgctaaaa  12620300                                                     --------->REM1(1)                                                    <-------TEIL                                                 --------->At4g35610                                               --------->MYB46(3)    --------->ZAT14                         --------->ETT(2)             --------------->AtSPL8    <---------ZAT14                         <---------ETT(2)             --------->ZAT6  --------->ZAT14                         <-----------HVH21              --------------->AtSPL3  <---------ZAT14                  --------->bZIP60(1)                  <---------YAB1 ---------GT1 <---------ANAC58     <---------bZIP60(1)                 <-----------GT1           <--- >GT1         <---------ANAC58   ------>NtERF2<---------At4g35610     --------->YAB1<---------TOE2(3)   tcacagtacagacttgacttgttccttctgctcgatgccatcactgtcaacagctacatgtctaatgctctattatcagtaccattaaggtcccaattga  12620400                  ------>ZmHOX2a(1)               <------ZmHOX2a(2)              --------->AGP1              --------->ARR11(3)              <---------ARR11(3)              <---------GLK1(2)              --------->ARR14(2)              <---------ARR14(2)                                        --------->At4g35610    <-----            ----------->ARR10          <---------At4g35610           ---------->DOF2           ------     <---------ANAC58               --------->ZAT14                --------->YAB1            --------     <---------ANAC58       --------->ZAT14                    <---------YAB1            --------->KAN4(1)  --------->ARR14(2)        <---------ZAT14   <-----------GT1--------->YAB1             <---------KAN4(2) ------At4g35610------>ZmHOX2a(2)  ------->GAMYB            <---------YAB1     ----------->RAV1(1)   gcagtttccgtctctagatcctcttgccagtatacaactgcagcaaattaacaaaatgcaaaatgataatcaaaagctgagccacataagaacattcagc  12620500  Previous    Next  AGI:  At2g29390.1    Description:  SMO2-1 (sterol 4-alpha-methyl-oxidase 1); C-4 methylsterol oxidase. similar to SMO2-2 (sterol 4-alpha-methyl-oxidase 2), C-4 methylsterol oxidase [Arabidopsis thaliana] (TAIR:AT1G07420.1); similar to putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] (GB:AAO13795.1); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) Range:  from: 12617620    to: 12619971    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g29400.1    Description:  TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1); protein serine/threonine phosphatase. Identical to Serine/threonine-protein phosphatase PP1 isozyme 1 (TOPP1) [Arabidopsis Thaliana] (GB:P30366); similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.3); similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.2); similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.1); similar to Serine/t Range:  from: 12620158    to: 12622476    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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