Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ------>MYB83                                     ------>MYB46(1)                                    --------->MYB55(1)                                    ----------->HVH21                                   <---------MYB46(2)                                   <---------MYB52(2)                                   <---------MYB111(2)                                   --------->AtMYB61                                   <---------MYB55(2)                                   <---------MYB111(1)                                   <---------MYB59                                  --------->ANAC46            <----------DOF2  --------->ANAC46            <---------DAG2   <---------ALFIN1      --------->TOE2(3)    <---------ALFIN1     --------->YAB1        ----------->RAV1(1)                                                      <     <--------HAHB4       --------->ANAC46     <-----------GT1                                      <    <---------YAB1       --------->LBD16      <---------YAB1                  --------->ARR14(2)    <  --------->YAB1     --------->ARR14(2)     <---------ICU4                    <---------ARR14(2)    < ---ZmHOX2a(2)       <---------ARR14(2)    --------->ICU4               ------->GAMYB              <- ---->ARR11(3)      ------>ZmHOX2a(1)--------->MYB52(1)           --------->ANAC46                 <- -----ARR11(3)  <-----------GT1 <---------ALFIN1      <----------DOF2 -------->P  ------>ZmHOX2a(1)-- ->DOF2  <-----------GT1--------->ANAC46   <---------YAB1  XXXXXXXXXXXXXXXXXXXXX>MIR771       -------   tcgattatcattaacttttctcctatccccaacaccacctaacacattattactccctttaagcctctgagcaaccctcaaatcctccctagacatcaaa  12559900                                                           <----------DOF2                                                          ------>ZmHOX2a(2)                                                          =============HOX2a_HOX2a                                                          =====================HOX2a_HOX2a           --------->TOE1(1)                              <---------HSFB2a(1)           --------->TOE2(1)                              --------->HSFB2a(1)          <---------LBD16                                <------ZmHOX2a(2)         --------->TOE1(2)                               ======================HOX2a_HOX2a       -------->P                                        ==============HOX2a_HOX2a    <------NtERF2                                       <-----------ARR10   ------>NtERF2                                        <---------ARR11(1)             ------>MYB83  --------->ALFIN1                                      --------->ARR11(3)             ------>MYB46(1) <------NtERF2--------->ARR14(2)                        <---------ARR11(3)           <---------MYB111(2) <-------GAMYB<---------ARR14(2)                        <---------AGP1               <---------MYB46(2) --------->ATERF1(1)                                    <---------ARR14(2)           --------->MYB46(3) ---------ORA47(2)                                      --------->ARR14(2)           --------->AtMYB61 ---------ATERF1(1)                                    <---------CCA1(2)             <---------MYB55(2) ---------DEAR4(2)                                    --------->LBD16                <---------MYB111(1) ---------MYB46(3)                       <----------ID1<---------ARR14(1)   --------->YAB1 --------DEAR3(1)                    --------->YAB1  --------->RAP2.6(2)    <---------ICU4 --------DREB2C(2)                ----------->GT1   <---------LBD16     ------>ZmHOX2a(1) ------->ALFIN1                --------->YAB1 --------->ANAC58  ------>ZmHOX2a(1)   --------->ANAC46 --->DOF2--------->TOE2(2)    <---------YAB1  --------->ANAC58 --------->TOE2(3) --------->MYB46(3)   ggcggtggcaacctcggattcaacttcatattagcatagtaataagacaagtaagccggatctttcctaaactcctcatcatcaccaccaaacccattac  12560000                                           ------>NtERF2                                           --------->At4g35610                                           <---------At4g35610                                          --------->RAP2.6(2)                                          --------->DEAR3(1)                                          --------->RAP2.3(2)                                          --------->RRTF1(3)                                         --------->RAP2.3(1)                                        <---------ATERF1(1)                  ----------------->AGL3--------->LBD16                                         <----              ------>MYB83              ------>NtERF2                                       ---------              ------>MYB46(1)          --------->ANAC46                                 --------->ALFIN1            <---------MYB111(1)     --------->AtMYB61                                  <-------GAMYB            --------->MYB46(3)      --------->DEAR3(1)        <---------At4g35610     <---------DEAR3(2)            <---------MYB46(2)      <---------ALFIN1          <------NtERF2           <------MYB46(1)            <---------MYB55(2)     <---------ZAT2             --------->At4g35610     <------MYB83            <---------MYB111(2)    --------->ZAT2            ----------->RAV1(1)     --------->MYB55(2)            --------->AtMYB61     ------>NtERF2           ------>NtERF2              <---------MYB46(3)           --------->ANAC46      <---------ALFIN1         --------->LBD16            <---------DEAR3(1)         --------->AtMYB61    --------->PCF2    ---------->DOF2    --------->MYB52(1)<---------DREB2C(2)      --------->ANAC46        --------->ATERF1(1)       <---------LBD16           ------->GAMYB -----      --------->ZAT6    --------->DAG2 <---------ALFIN1 --------->SPL7           --------->MYB46(3)<-    <-----------GT1    ---------->DOF2 --------->DEAR3(1)--------->ANAC46 --------->MYB46(3)<--------   ccttattaacaccaccaaactccaaaaaaggagccccacctccgccgctaaaaagccctccggcagcactaacagaaccatcaacagtcggtggagcaga  12560100                                                                    <---------ATHB12                                                                   ------>MYB83                                                                   --------->ANAC46                                                                   --------->ANAC58                                                                   ------>MYB46(1)                                                                   --------->ANAC58                                                           <---------At4g35610                 ------                                                           --------->At4g35610                 <----- -----ARR14(2)                                          <---------ZAT2                      --------- >At4g35610                                             --------->At4g35610                 <-------- ---->ARR14(2)                       --------->At4g35610--------->ZAT2                     --------->ICU4 --------ALFIN1                   <---------At4g35610  <-----------RAV1(1)               --------->YAB1 -At4g35610      <---------At4g35610 <---------At4g35610<---------At4g35610         <----------DOF2 -   gccacttctaaacaagttaagctctctctcaagctcatcagcttctacttgccttctctgctgctcaccaagcaatactccaatctctttctcataatca  12560200                                                        --------->ATHB12                                                        --------->YAB1                                                       <---------YAB1                                                    <---------MYB52(1)                                                   --------->LBD16   ---------->DOF2                               <---------LBD16--------->At4g35610 --->YAB1                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ----------->RAV1(1) ----ICU4             --------->TOE2(3)        <---------ARR14(2)     <----------ID1 >YAB1            --------->DOF5.7(2) <---------At4g35610       <---------ANAC55(2)         --------- -ICU4     ------->TEIL       ------->TEIL     --------->ARR14(2)--------->TOE2(3)          --------- -------->LBD16   <---------MYB52(1)  --------->At4g35610   <-----------HVH21          ------------>CBF   tccccaaaagatgaatcttcgttacctctatgcatcggtcttctccctagttccggtatcattgtcacctaaacaacaaaaaacccaaaatcaattcaat  12560300                                                             ------------>CBF                                                            <-----------GT1                       --------->AHL20(2)                --------->ARR11(3)                 <---------ANAC55(2)              --------->TOE1(3)                 <---------YAB1     <------ZmHOX2a(2)    <---------ARR11(3)         --------->ANAC58          <---------ARR11(3)    --------->AHL20(1)          --------->HSFB2a(2)         --------->ANAC58          --------->ARR11(3)   --------->AHL20(2)     --------------->AGL15 >AHL20(2)       <----------ID1---------->DOF2    --------->TOE2(3)      <---------GLK1(2)        --- --->CBF --------->ANAC46   --------->YAB1     <-----------GT1      --------->LBD16  <---------HSFB2a(2)   agtttatactcacaccattacgaaaaaaaatcataaagatcaaaactttatacctcaaatatatacaatccccaaaattctctgtttttagaactaaacc  12560400          <----------DOF2                             <-----------GT1   <------ZmHOX2a(2)                                <---------AHL20(2)                       --------  --------->ARR11(3)                              <---------YAB1                ---------->DOF2    <-  <---------ARR11(3)                           <---------YAB1                --------->YAB1>>>>>>>>>MYB98 ------->DOF2                           --------->ATHB12          <---------MYB52(1)   --------->TOE1(3)   caaagatcaaaactttattaagcgatactcaaacccattcgatgatttgattattttttctggttactgtttgttttaaaaataaagaaccctaacaaag  12560500                                                                     ------->TEIL                                                                    <---------ARR11(3)                                           --------->ANAC46       --------->ANAC58                                           --------->ANAC55(2)--------->AtLEC2                ----------->GT1         --------->WRKY12   <---------DEAR3(1)    <------------CBF   <-----------RAV1(1)<---------LBD16 <------NtERF2--------->TOE2(3)           --   <<<<<<<<<RAP2.2<------ZmHOX2a(1)     ----------->HVH21------>NtERF2 --------->TOE1(3)<----------DOF2 -->DOF2     --------->CCA1(2)<-----------TBP    --------->YAB1   --------->ANAC58  ---------->ID1<-- ---------DOF2 --------->CCA1(2)     <---------ZAT6     <---------DEAR3(1)       --------------->AtSPL8   actttagattgagagagataggaaaatgtgggttttatagtgttgacggaataatacgacggcgatgcaagaaccttagggtttttgttccttttttttt  12560600                                             <------MYB83                                             <------MYB46(1)                                             <---------MYB46(3)                                            <---------AtMYB61                                           <--------P                       <---------At5g28300<-------GAMYB    <---------YAB1 <---------ICU4 --------->AHL20(1)   --------->ARR11(3)  <---------LBD16  <---------TOE1(3)   <---------ARR11(3) --------->MYB52(1)<---------TOE2(3)                                --------->YAB1 ------->YAB1  --------->AHL20(2)--------->AHL20(2)               ---------->DOF2       <---------YAB1 -------YAB1   <---------AHL20(2)--------->YAB1               --------->ZAT18        --------->ICU4   atgattatctttggaaattaaaaattacggcgaaataatattagggttggtttgacttagcgattgcacaaaggaatataaaaaaacattatgaaaattg  12560700                                                 <----------DOF2                                                 <---------DAG2                                               ---------->ID1                                          <----------DOF2                                        <------ZmHOX2a(2)                          <----------DOF2                 <-----------GT1        <---------RVE1(1)                       --------->ARR11(3)          --------->TOE2(3)            <---------ARR11(3)                       <---------ARR11(3)          --------->TOE1(3)            --------->ARR11(3)                 --------->ZAT14     --------->MYB46(3)                --------->AGP1<---------YAB1       <---------ZAT14---------->DOF2     <---------MYB52(2) <---------TOE1(2)------>ZmHOX2a(2)                <---------At4g35610     <--   gaagataacaaaccttatttttctcgttggaactgttttgagatcttttggctttatgtttcagtttgggttttagagcagagacctttaccaaagtaca  12560800  Previous    Next  AGI:  At2g29200.1    Description:  APUM1 (ARABIDOPSIS PUMILIO 1); RNA binding. similar to APUM4 (ARABIDOPSIS PUMILIO 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G10360.1); similar to APUM3 (ARABIDOPSIS PUMILIO 3), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29140.1); similar to APUM2 (ARABIDOPSIS PUMILIO 2), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29190.1); similar to putative pumilio domain-containing protein PPD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89558.1); similar to Nucleic acid binding NABP [Medicago truncatula] (GB:ABD33134.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61602.1); contains InterPro domain Armadillo-type fold; (InterPro: Range:  from: 12556361    to: 12560262    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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