Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <----------DOF2                      ---------->DOF2                   --------->YAB1                  <---------YAB1   <--------P               --------->DOF5.7(2) <---------WOX13(1)             <---------ANAC58     <-------GAMYB            <-----------GT1 -------->At4g35610--------->TOE2(3)          ----------->GT1           <---------AtMYB61 ---------At4g35610--------->TOE1(3)<---------MYB46(3)   <-------GAMYB  --------->DAG2 ------>DOF2 <---------ANAC58    <---------MYB46(3)     <---------MYB46(3) --ZmHOX2a(1)<---------ANAC46   <---------TOE2(3)      <--------P     ---------->DOF2            <---   aaagctgaagaaatggcgttaccataaagactttgtggttgatgaaaatagtaaatggttgttacaaggctggaaaggtcgaactctctatgcttcttct  12494000                                                                       <------MYB46(1)                                                                       <------MYB83                                                              <---------ANAC58                                                              <---------ANAC58                                                              <---------ANAC46        ------>ZmHOX2a(1)                                     <---------ANAC55(1)        <---------At4g35610  <------MYB46(1)                             <---------ANAC55(2)   <---------MYB52(1)   --------->At4g35610  <------MYB83                                --------->ANAC55(2) ----------->HVH21  --------->TOE2(3)  <---------ANAC58                        --------->ARR11(3)  --------->ANAC55(2)  <---------ARR11(3)  <---------ANAC58              ----------->GT1          <------ZmHOX2a(1)         --------->ARR11(3) <---------MYB46(3)     <---------ZAT6   --------->YAB1<---------TOE2(3)          <---------GLK1(1) --------RAV1(1)        <-----------RAV1(1)   ----------->GT1 <---------ANAC55(2) --------->GLK1(1)   tgttgggttcctgcctagtgattttagtgttgttttgttacaaaaatcatgtaattttaggattacgtctgataggtttagaagaaatcttagctcaatt  12494100                                                                      ---------->DOF2                                                                     --------->AtMYB61                                                                  --------->AtMYB61         <--------                                                                  <---------ALFIN1       <---------ALFIN1                                                                 --------->MYB46(3)     <------NtERF2                <---------AHL20(2)                             ------->GAMYB          --------->PCF5               --------->YAB1 --------->ICU4     --------->YAB1--------->AtMYB61      --------->PCF2            --------->HSFB2a(2)  <---------YAB1 --------->ICU4 --------->ANAC46       <---------TCP20            <---------HSFB2a(2)--------->YAB1   <---------YAB1--------->MYB46(3)      <---------TCP15(1)     <---------AHL20(1)       <---------YAB1 <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------CCA1(2)--------->ATHB12   ------->TEIL        <-----------GT1  <---------At4g35610   tctctcatatatttctataaaaatgtttggccattataaatgaacttgtgattataagtttataaccaccaccaaagttagcttattggccccactttaa  12494200                                                                                   ------->PIF5                                                                                   <-------PIF5                                                                                   ------->MYC2                                                                                   ------->MYC3                                                                                   <-------MYC2                                                                                   ------->MYC4                                                                                   <-------MYC4                                                                                   <-------MYC3                                                                                  ===================                                                                                  --------->TGA1a                                                                                  <---------O2                                                                                  ===================                                                                                  <---------ANAC46                                                                                  <---------TGA1a                                                                                <---------ALFIN1                                                                             --------->ANAC46                                                           --------->MYB52(1)--------->ANAC58                                                         <---------MYB52(2)  --------->ANAC58                                                        <---------ANAC55(2) --------->SPL7                                                        --------->ANAC58  <---------SPL7                                              <-----------GT1      --------->WOX13(1)                                         <------ZmHOX2a(1) <-----------GT1<---------ZAT18                                       <---------TOE1(2)--------->ANAC58 <---------ANAC58                 >>>>>>>>>>>>>>>>>LFY  <---------TOE2(2)--------->ANAC55(2) ------->TEIL----------->TBP               <-----------GT1      <---------O2     --------->WRKY18(1) <---------ANAC58    --------->ANAC46                --------->O2    <--------ZAP1------------>CBF --------->O2     <- --DOF2   --------->ICU4            --------->ANAC46<-----------HVH21   --------------->AtSPL3     <-   ttctccacagaactaattaacccattgtatgaaattccacgtaggattttactgggtcaagtaacgagccaattagcgtaccccacgtgtatatatagtt  12494300                                                                                              -------                                                                                      --------->At4g35610                                                                                      <---------At4g35610                                                                                      --------->ZAT2                                                                                     <-----------RAV1(1)             <---------------AGL15                                                  =================            ----------------->AGL3                           <---------DAG2         ------>ZmHOX2a(2)     <---------ANAC58                                        <----------DOF2       ==================     <---------ANAC58                                     *TSS                    <---------ARR14(2)     <---------ANAC46     --------->GLK1(2)        <---------ATHB12               --------->ARR14(2) =========bZIP_DOF       <---------GLK1(2)     ------------>CBF              <---------ARR14(2) =========bZIP_DOF---------->DOF2              --------->ZAT14               --------->ARR14(2) --------DAG2--------------->AGL15     <<<<<<<<<TBF1--------->YAB1      <-----------GT1  ------>NtERF2 ---------DOF2  ----------->TBP   <----------DOF2--------->WOX13(1)  <---------DAG2<------ZmHOX2a(2)   cctttttccttggaacctataaaagaagaatctcttctttcttcttctctgcaatcaaaacaacttttccaatttttcagttccgatctgctgccattga  12494400       ------>ZmHOX2a(2)                       <---------TOE1(2)      <------ZmHOX2a(2)                      <---------ANAC58     <---------ARR14(2)              <----------DOF2     --------->ARR14(2)             ------>ZmHOX2a(2)     <---------ARR11(3)            <---------RVE1(1)     <---------ARR14(3)            <------ZmHOX2a(2)     --------->ARR14(3)           <---------ARR11(1)     --------->ARR11(3)           <---------ARR14(2)   ----------->ARR10              --------->ARR14(2) <------ZmHOX2a(1)                <---------ARR11(3)                                             <--- =============HOX2a_HOX2a         --------->ARR11(3)                              --------->AHL20(2) -->WRKY38(1)                    <---------ARR14(1)                               --------->AHL20(1) =======HOX2a_HOX2a              <---------CCA1(2)                                <---------AHL20(1) =======HOX2a_HOX2a         --------->YAB1   <---------ANAC58  >>>>>>>>>>WRKY26   <---------AHL20(2)   ctaggaagatcttcaagcttcaaaactctataatcggatcttttattccttggtacagttgaagttgatcaagctctagttgaatttattgttcttcatc  12494500                                                                                                 <---                                                                                           <---------TOE2(3)                                                                                           <---------TOE1(3)                                                                                           --------->DAG2                              <<<<<<<<<TAC1                        <---------AHL20(2)  --------->YAB1                  --------->DAG2    --------->ICU4          <---------TOE1(3)         <---------AHL20(2)        <-----------GT1     <---------ALFIN1    <---------TOE2(3) --------->AHL20(2) --------->AHL20(2) -------DOF2     ---------->DOF2    ------>ZmHOX2a(1)    <---------MYB52(1)      <-------TEIL    ----   ttttggattttaacccagtaaaagtgttcaacactgtcctgatcatctataacgttctcgttaagctattaaatctatctggattcatataataaggttc  12494600                                                                         <----------DOF2                                                                       <---------YAB1                                                                     <---------CCA1(2)                                                                   ------>ZmHOX2a(2)                                                                 --------->AGP1                                                                --------->GLK1(1)                                                                <---------GLK1(1)                                                               ----------->ARR10                                                           <---------At4g35610                                                           --------->At4g35610                                                 ------>ZmHOX2a(2)<------ZmHOX2a(2)                                               <---------ARR11(3)<---------ARR11(3)                                               --------->ARR11(3)--------->ARR11(3) ------HSFB2a(2)                       ------>ZmHOX2a(2)   <---------ZAT14       <----------DOF2 ----->HSFB2a(2)        <---------TOE2(3)  <----------DOF2 --------->ZAT14<---------YAB1 <----------DOF2   cataagtttggattttagtttgttttaagttttttcgatgatcgcctttgatcttgttttctgcagagatcttatctttatagctttgatactttgaatt  12494700                                                                                               <-----                                                                  <---------ARR11(3)          <------                                                                --------->ANAC58              <------                                                                --------->ANAC58              <------                                                         <---------ZAT18                  <---------ANAC58                                                         --------->ZAT18                  <---------ANAC58                <---------TOE1(2)                     <---------ANAC58            --------------->AGL15                <---------TOE2(2)                <---------AHL20(2)               <---------------AGL15             ------>ZmHOX2a(2)               <----------DOF2--------->ANAC46      --------->TOE2(3)           >>>>>>>>>ARR2                     <---------DAG2--------->ZAT18       ----------------->AG           >>>>>>>>>ARR1                 <-----------GT1 --------->PCF2          ----------------->AGL1          <------ZmHOX2a(1)         <---------AHL20(2)<---------ANAC58     --------->ATHB12<--------P   gaaatttgtataggatcgtatgttattctgaagttgattttttttagctttttattttgtgcccacaaggtattcgatgatttgcctcaatgggttgcgt  12494800                           --------->ARR11(3)                           <---------GLK1(2)                           <---------ARR14(2)                        --------->CCA1(2)                       <------ZmHOX2a(2)                            --------->ARR11(3)                      <---------ARR11(3)                            --------->ARR11(1)          <----         --------->HSFB2a(1)                                        <---------ARR11(3)          <----       <---------GLK1(2) ----------->ARR10             <-----------RAV1(1)        --------->HSFC1(2) --GAMYB <---------HSFB2a(1)                    ---------->ID1      <---------ARR14(2)          ----- ---ANAC58            --------->ARR11(3)    <----------DOF2         --------->ARR14(2)     <--------- ---ANAC58        --------->YAB1          ---------->ID1          ----------->ARR10    >>>>>>>ZML2 ---ANAC46        ---------->DOF2        <-----------GT1       --------->ALFIN1   <---------HSFC1(2)<   tgtaaaccagaattttctaataaagatcagattttgaagtgtttttctttttcgtttttgtggcagtggagatatggatggagatggttctagctttgag  12494900  Previous    Next  AGI:  At2g29060.1    Description:  scarecrow transcription factor family protein. similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21632.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 12488821    to: 12494060    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g29070.1    Description:  ubiquitin fusion degradation UFD1 family protein. similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT2G21270.2); similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT2G21270.1); similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT2G21270.3); similar to unknown [Populus trichocarpa] (GB:ABK94471.1); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854) Range:  from: 12494358    to: 12496457    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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