Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->ATHB51                                                                      -------->ATHB1                                                                      --------->ATHB12                                                                      <---------ICU4                                                                     --------->ICU4                                                                  ------>ZmHOX2a(2)                                                                  ------------>ATHB5                                                                  <-------TEIL                                                                 <------ZmHOX2a(2)                                                                --------->ARR14(2)                                                         <----------DOF2                                                       --------------->AGL15                                                       <---------------AGL15                                                      <-----------------AGL3                                                 <---------------AtSPL8                                                 --------------->AtSPL3         <---------CCA1(2)                 =============================MADS_MADS         <---------At4g35610               --------------->AGL15<---------ARR14(2)        ------->TEIL               --------->ANAC58   <-----------------AGL2   --------->YAB1<XXXXXXX      <-------TEIL                 --------->ANAC58  <---------ZAT18 <---------YAB1      ----------->GT1 --------->AHL20(2)         <---------ATHB12     --------------->AtSPL8        --------->TOE2(3)   caaaaaaatgcatctctcgctctcggacaaatgatgcaagaaatacttgtagtagtactctttttggatccattattgcaaacttaatctcgagtaaaat  12484800                                                <---------YAB1                                              <--------HAHB4                                              --------->YAB1                                              <--------ATHB1                                              -------->HAHB4                                             <---------ATHB51                                             --------->AHL20(2)                                             <---------YAB1                                             --------->ICU4  -------->ATHB1            <---------ARR11(3)    ------>ZmHOX2a(2)          <---------ICU4            --------->ARR11(3)   <------ZmHOX2a(2)           --------->ATHB51            <---------GLK1(2)   <---------AGP1--------->ATHB51    <---------YAB1          ----------->ARR10     <---------ARR14(2)          <---------AHL20(2)      --------->YAB1            <---------ARR11(3)          --------->AHL20(2)  --------->ATHB51              --------->ARR11(3)    ----------->GT1  --------->ATHB12              <---------ARR14(3)    --------->TOE1(3)  -------->ATHB1                --------->AGP1<---------ICU4--------->ICU4<---------AHL20(2) <---------AHL20(2)             --------->ARR14(3)    --------->TOE2(3) <---------YAB1 <---------YAB1                 <-----------ARR10--------->YAB1 <-----------GT1 <---------ATHB51     <---------TOE1(3)    --------->YAB1   <---------ATHB51        ----------->HVH21 --------->ICU4       <---------TOE2(3)   <---------YAB1 --------->AHL20(2) ---------->DOF2  -------- XXXXXXXXXXXXXMIR1886.3         --------->ARR14(2)   --------->ANAC46 --------->AHL20(2)     <-------   gaaattattgataagattttctctaacgtttcaagatcttgtctataataattatacgttaaattattacgattattttaaagtgtttgacggttttaga  12484900                                                                             <-----------GT1                                                                          --------->ARR11(3)                                 --------->ANAC58                 ---------->DOF2        --------->ZAT6                      <---------ARR14(2)                  --------->ANAC58<---------ARR11(3)      ---------->DOF2 --------->ARR14(2)                  --------->ANAC58--------->AHL20(1) ->HSFB2a(2)  <---------TOE2(3)  --------->ANAC58         --------->ANAC46<---------AHL20(1) --HSFB2a(2) <-----------GT1   ---------->DOF2        <-----------GT1----------->GT1<-----------GT1   agctaagtcaaagtttaacatttggattcgaaggaaaggaacatattttctgaattttacaagaaacagaaaggaatattttctattttcaactctacta  12485000                                                                            <---------YAB1                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                                                                         <---------ATHB12                                                                     --------->LBD16                                                                    --------->ANAC58                                                                    <---------ANAC46<---------ARR11(1)                                                                    <---------ANAC55(2)                             --------->ATHB12                       --------->ANAC55(2)                            <-------TEIL               ---------->DOF2   --------->ICU4   --------->ZAT14                    --------->YAB1              --------->WOX13(1)  --------->ANAC58------->TEIL ----                   <---------AHL20(2)    --------->ANAC55(2)       <---------LBD16 <---------CCA1(2)                  --------->AHL20(2)     <---------ANAC55(2)   <-----------RAV1(1) <---------GLK1(2)   ctaatatacaaatacaactatataataagattcattgttgatcatgtgattaatcaacaaagctactgttgcgcaattaatattcgaatctctaaactca  12485100                                          <---------AHL20(2)                                          --------->ATHB51                                          --------->ATHB12                                          --------->AHL20(2)                                         --------->ICU4                                      --------->AHL20(2)                                      <---------AHL20(2)                                     <---------AHL20(2)                                     --------->AHL20(2)        --------->YAB1                                     --------->AHL20(1)  <----------DOF2                                     <---------AHL20(1)  --------->TOE1(3)                                --------->AHL20(2)    ------>MYB46(1)                             --------->YAB1           ------>MYB83                            <------                            <---------AHL20(2)      <---------MYB59                           <------                            <---------YAB1<---------ICU4 --------->TOE2(3)             --------->AHL20(2)                         <---------AHL20(1)         <---------MYB46(2)                 <---------AHL20(2)                         --------->AHL20(2)         <---------MYB111(1)               <---------AHL20(1)               --------->AHL20(2)<---------AHL20(2)<---------ANAC55(2)                --------->AHL20(2)    <---------AHL20(2)   <---------ARR11(3)        --------->ANAC55(2)                <---------AHL20(2) ----->ANAC55(2)         --------->AHL20(1)      <-----------GT1        ---------->ID1--------->AHL20(1)   tgtgatttaaaccaagattaaaaactatatattataaaatttaattatttgttacctaactttaaacatattttgtcttaaatccaaatttaattagctt  12485200        <---------GLK1(1)        --------->GLK1(1)            <-------TEIL                                           ------>ZmHOX2a(1)    --------->ANAC58    ---------->DOF2 <---------At4g35610                                 <--------    --------->ANAC58   <------ZmHOX2a(1)--------->At4g35610                      --------->DAG2 ---ANAC58             *TSS  <---------YAB1                              <-----------HVH21------>ZmHOX2a(2) ---ANAC58       ---------->DOF2<---------WOX13(1)         <----------DOF2      ---------->DOF2   <--   gttcacaaggaaatgcctcaaaagaggaaagacgattgattcatctcaaccttctcgtcttctttcggacaacaatgtcacaaaaagtctgatcctttct  12485300                                                                            --------->DEAR3(1)                                                                            ----------->HVH21                                                                           --------->RAP2.3(1)                                                                           --------->RRTF1(1)                                                                           --------->ATERF1(1)                                                                           <------NtERF2                                                                          <---------ORA47(2)                                                                          <---------ATERF1(1)                                                                          <---------RAP2.3(1)                                                                          <---------RAP2.6(1)                                                                          ------>NtERF2                                                                          <---------ERF1                                                                          <---------RRTF1(1)                                                                         <---------DEAR3(1)                                                                         <---------ANAC46                                                                         --------->DEAR3(1)                                                                         --------->ATERF1(2)                                                                         <---------RAP2.3(3)                                                                         <---------ATERF1(2)                                                                         <---------RAP2.3(2)                                                                        <---------At4g35610                                                                        --------->RAP2.3(1)                                                                        <---------ABI4(1)                                                                        --------->DREB2C(1)                                                                        --------->ATERF1(1)                                                                        <------NtERF2                                                                        --------->DEAR4(2)                                                                        --------->At4g35610                                                                       <---------RRTF1(1)                                                                       <---------DEAR4(2)                                                                       <---------ERF1                                                                       <---------ORA47(2)                                                                       <---------RAP2.6(1)                                                                       <---------RAP2.3(1)                                                                      <---------RRTF1(3)                                                                      <---------ATERF1(2)                                                                      --------->DEAR3(1)                                                                      <---------DEAR3(1)                                                                      --------->ATERF1(2)                                                                      <---------RAP2.3(2)                                                                      <---------RRTF1(2)                                           <---------HSFB2a(2)        <---------RAP2.3(3)                                        <---------ARR14(2)           --------->ATERF1(1)                                       <------MYB83                  <---------ABI4(1)                                       <------MYB46(1)              <---------ATERF1(1)                                     <--------P                    --------->DEAR3(1)                                   <------NtERF2                   <---------ATERF1(2)                              ------>ZmHOX2a(2)                  --------->MYB52(1)                              <---------DEAR3(1)               --------->MYB46(3)                             <------ZmHOX2a(2)                <<<<<<<<<GATA-4                            <---------ARR14(2)                <<<<<<<<<GATA-1 <------NtERF2                            --------->ARR14(2)                <<<<<<<<<GATA-3----------->RAV1(1)                        --------->ANAC58<---------ARR11(3)    <<<<<<<<<GATA-2------>NtERF2                        --------->ANAC58--------->ARR11(3)   <---------ARR14(2)  --------->ANAC58                      <---------ANAC58----------->ARR10      --------->ARR14(2)  --------->ANAC58                      <---------ANAC58<---------AtMYB61 ----------->GT1------>NtERF2             --------->HSFB2a(2)  ------>NtERF2         <---------MYB46(3)<---------DEAR4(2)             --------->HSFC1(1)   --------->LBD16      --------->ALFIN1<---------ATERF1(1) --DOF2      <---------HSFC1(1)  <---------ANAC46<------ZmHOX2a(2) --------->ATERF1(2) --------DOF2<---------HSFB2a(2)<---------LBD16 --------->ARR11(3)--------->DEAR3(2)  <-----------RAV1(1)   ctttagatttggcttcgagaaatggctcgcgatcggcgggaaggtctggagatcaaggtggtgaatccaccggcggcggcgacaaacaatgtggctgtag  12485400                  <---------ANAC46                  <---------O2                 <------NtERF2                ------>NtERF2               --------->DEAR3(1)               <---------DEAR3(1)               ----------->HVH21              --------->RAP2.3(1)              --------->ATERF1(1)              <------NtERF2             <---------RAP2.3(1)             ------>NtERF2             <---------ATERF1(1)            <---------DEAR3(1)            --------->DEAR3(1)           --------->ATERF1(1)           <------NtERF2          ------>NtERF2          <---------ATERF1(1)         <---------DEAR3(1)                          <---------At4g35610         ----------->HVH21                           --------->At4g35610         --------->DEAR3(1)                         --------->MYB52(2)                            ---        --------->ATERF1(1)                        --------->SPL7                        <---------ANAC58       ------>NtERF2   ----------->HVH21          <---------MYB52(1)                     <---------ANAC46       <---------ATERF1(1)                       <---------SPL7                     <---------AtLEC2       --------->LBD16 <---------ARR14(2)      <-------TEIL                  <---------AtMYB61    <--      <---------DEAR3(1)                    --------->ZAT2                 <----------DOF2        ---     <---------LBD16  <------ZmHOX2a(1)   ------->GAMYB                 <---------TOE1(3)<---------ANAC58   aaacgtctccggcgacggcgacgaggagacggagacaacaacaacgagcttcgttcgctgagtttagaccgtttaagctttggtttccatggcttgttcc  12485500          <------NtERF2         <---------MYB46(3)        <---------RAP2.6(2)        <---------ANAC46     --------->ALFIN1                                                                            ----   <---------ANAC46                                                                     <---------ANAC58   <---------ANAC58        --------->ANAC46                                             <---------ANAC46   <---------ANAC58        <-----------GT1                                              <---------ANAC58   --------->YAB1         ---------->ID1                                           <------MYB46(1) ------>At4g35610      <---------DAG2                                      <---------ANAC58     ----- -------At4g35610      <----------DOF2                   ------>ZmHOX2a(1) <---------ANAC58   ------- ------>ZAT2    --------------------->WRI1    <-----------GT1--------->ARR11(3)    <------MYB83 <----   agctatcgtggtggctaacattgcccttttcgccatttcgatgtttattaacaattgtcctaagaactcggcttattgcttagctaggtttcttgggaga  12485600                                                 <---------O2                                                 <---------bZIP60(2)                                                 <---------TGA1a                                                 --------->TGA1a          <----------DOF2                                                 ========================bZIP_DOF                                                 <---------ANAC46 <---------AGP1                                                 <---------ANAC58 <-----------ARR10                                                 --------->O2     --------->ARR11(3)                                      =====================================HOX2a_HOX2a                                      ------>ZmHOX2a(1)       ---------->DOF2                                      ====================================HOX2a_HOX2a                               <---------HSFB2a(2)         --------->TOE2(3)  <----------DOF2         ------>ZmHOX2a(1)      ========================bZIP_DOF <---------ANAC58     --------->ARR14(2)      ----------->HVH21   <---------ARR11(3) <---------ANAC58     <---------ARR14(2)    <----------DOF2--------->TOE1(3) ----->CCA1(2)        --------->GLK1(2)     ===============bZIP_DOF       <---------DAG2 ---->ARR14(2) ---------->DOF2 --------->HSFB2a(2) --------->ALFIN1 ------>ZmHOX2a(2)             --- ---->ARR10  <---------YAB1  ----------->RAV1(2) <---------ANAC58--------->RVE1(1)               <--- -----ARR14(2) ============================================bZIP_DOF<------ZmHOX2a(2) <---------YAB1 <   tttgcttttcagcctatgaaagagaatcctcttctgggtccttcttctttgacgtgggtaaccttaaagatctcaactttatttcttaagattccacatt  12485700  Previous    Next  AGI:  At2g29050.1    Description:  ATRBL1 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 1). similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT3G53780.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO21639.1); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610) Range:  from: 12485223    to: 12487449    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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