Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------ALFIN1                                                --------->ANAC58--------->ANAC58         <---------ATHB12                                                --------->ANAC58--------->ANAC46        ------>MYB46(1)                                         --------------->AGL15  --------->ANAC58        -------->P                                     <---------GLK1(2)         --------->SPL7           ------>MYB83                                     <---------ARR14(2)     <---------ANAC58          --------->MYB46(3) --------->TOE1(3)                   --------->ARR14(2)     <---------ANAC58          --------->AtMYB61 --------->TOE2(3)                  <------ZmHOX2a(1) <-----------HVH21     <---------At4g35610   aaaccttaatggagattacgactcaaacacagtctggaggattcttgaactagcaatgtcatgcgtaagccactcttcatcagatagaccaaccatgtcc  12476400                                                                     --------->YAB1                                                        <-------TEIL----------->TGA1                                                      <---------GLK1(2)                       <---------ANAC58         --------->ANAC58  <---------ICU4                    -               ---------->DOF2                  --------->ANAC58--------->ARR11(3)  --------->ARR11(3)         <---------AHL20(1)                     --------->ANAC46<---------ARR11(3)  <---------ARR11(3)  ----------->GT1      <---------ANAC58--------->AHL20(2)     <---------YAB1    ---------->DOF2   <--   aaagttgttaatatacttaaagagtgcttgctctcagaaaatttaagaacaagacagattcatcaagataatgacgatgactcaaagaactcagacttga  12476500                                                                                    -------->HAHB4                                                                                    --------->YAB1                                                                                    --------->AHL20(2)                                                        <------------------------ANAC81                                                       <----------DOF2        --------->TOE2(3)                                --------->ANAC58  ------->TEIL                --------->YAB1          --------->ARR14(2)    --------->ANAC58  --------->GLK1(2)          <---------YAB1          <---------ARR14(2)    --------->ANAC46 <---------GLK1(2)          <---------TOE2(3)      <---------LBD16          --------->ZAT18 --------->ANAC58           <---------AHL20(2)       <- -------->AHL20(2)  -------->P <---------ZAT18 --------->ANAC46        --------------->AGL15  <------ --------DOF2      <-----------GT1             --------->ANAC58     <-----------GT1<---------YAB1  <-   ctttaaatttcggaactgaagtaacccctcttgcacgctagtctcttacacgaatctctttttttttttttttcaatttatgttaattatagacttcttt  12476600                                                                               <----------ID1                                                                        <----------DOF2 --------->MYB52(1)                                                                        --------------->AGL15                                                            >>>>>>>>>GATA-1    ----------->GT1    <--                                                          ----------->GT1   ---------->DOF2       --- --------ANAC58                      <-----------GT1 --------->CCA1(2)  <---------------AGL15     <-- ----DOF2                       <---------AHL20(2)  <---------ARR11(3)  --------->TOE2(3)     ------- --------ANAC58               <---------AHL20(2)    --------->ARR11(3)  --------->TOE1(3) <----------ID1   ttcttgttttttatatgaattcattctcttatatttttttttcaaatttgaacagatatatagataaaacaaaactttaaaaggaaaaaaaaacgaaaaa  12476700                                               <---------ANAC58                                               <---------ANAC58                                               <---------ANAC46                                               <---------AtLEC2                                              <-------TEIL                                            ------->MYC3                                            ------->PIF4                                            <-------MYC3                                            <-------MYC2                                            ------->PIF5                                            <-------PIF5                                            ------->MYC4                                            <-------MYC4                                            <-------PIF4                                            ------->MYC2                                           --------->ANAC55(2)                      --------->AHL20(1)                                           <---------ANAC55(2)                      <---------AHL20(1)                                           <---------ANAC46                        <---------AHL20(2)                                           <---------bZIP60(2)                   --------->AHL20(2)                                           <---------ANAC58                      <---------AHL20(2)                                           <---------ANAC58                      <-----------TBP                                           --------->O2                        ----------->TBP                                           <---------TGA1a                     --------->AHL20(2)                                           --------->TGA1a                    --------->AHL20(1)                                           <---------O2                       <---------AHL20(1)                                          ------------>OsbHLH66              --------->AHL20(2)                                       <-----------HVH21                   --------->AHL20(2)     <--                                    <------------CBF                     --------->AHL20(2)      <---                                   -------->ATHB1                        <---------AHL20(2)     -----  ----------->GT1                  --------->ATHB51                    <---------AHL20(2)     <------ -------ARR11(3)                   <---------ICU4                      ----------->TBP      <-------- ------>ARR11(3)                  <---------YAB1                    <---------AHL20(1)   <---------AHL20(2) -------GLK1(2)                   --------->ICU4                    --------->AHL20(1) <---------AHL20(2) --->DOF2                      <---------YAB1--------->ALFIN1      --------->AHL20(2)<---------AHL20(2)   gattttgtaattttgttttgtttttgttccatcaccattattgtcacgtgcgtggcacagaaactagaaatatataaaaatatatatatatttttttccg  12476800        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      <---------ARR11(3)      --------->ARR11(3)      --------->ARR14(2)                                       <---------YAB1      <---------ARR14(2)                                   <---------GLK1(2)      --------->AGP1                                       --------->ARR14(2)    ----------->ARR10                                      <---------ARR14(2) *TSS <---------AGP1                                      <---------At4g35610 -------AtMYB61                                          ----------->ARR10 ------MYB52(1)               ----------->GT1         <-----------HVH21 ---->LBD16               --------->MYB111(1)       <-------TEIL ---LBD16              ----------->GT1            <---------GLK1(2) ---GT1--------->CCA1(2) <--------P          <----------DOF2--------->GLK1(2)---------->DOF2 --------   gtggtatagatctgaatcagagaattggtaagtagtaagaaccctagctttagattcgtcagattctgattactcgaatcaaagcagggtttttgacact  12476900               <---------ANAC46             <---------ZAT14          <---------ANAC46        ------>ZmHOX2a(2)      --------->ARR14(2)                     ---------->DOF2      <---------ARR14(2)           ----------->GT1 --------->ARR14(2)               ----------->GT1      --------->GLK1(1) --------->GLK1(2)              <---------ARR14(2)     <---------GLK1(1) <---------ARR14(2)             --------->ARR14(2) ----------->GT1   <------NtERF2 --------->At4g35610 ->ZAT6<------ZmHOX2a(2)  <---------AtLEC2 <---------YAB1<---------ATHB12  <---------WRKY38(1)   aaaaatccgatctcgtgaagtgtgttttgcatcgaatcggaaaatatgaaagaagggaaatcatcgaagtcgtcgagtcaacaagagcagcatgaacaga  12477000                                                                       <---------ARR11(3)                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                ----------->HVH21                                                              <---------HSFB2a(2)                                                              --------->HSFB2a(2)                                                              --------->LBD16                                                              ------>ZmHOX2a(1)                         <----------DOF2                     --------->TOE1(2)                --------->TGA1a                              <---------LBD16           <---------ANAC58                <---------TGA1a                             ----------->RAV1(2)        <---------ANAC58                ====================bZIP_DOF            <---------HSFC1(2)           ================            <-----------HVH21                           <---------At4g35610          ------>ZmHOX2a(1)  --------->YAB1--------->O2                            --------->HSFC1(2)   <-----------GT1 <---------YAB1 <---------O2                            --------->HSFB2a(1)<-----------GT1<---------ZAT18   tttatcatcaaaacagtcacttgggttctttcaacttcgccaaattgtttgattctgaagcttcctgggacaaggtattacactctccttcgtgctctct  12477100                          <---------MYB52(1)                     --------->GLK1(2)                                                    --------->YAB1                     <---------ARR14(2)                                                   <---------ICU4                     --------->ARR14(2)                                                   <--------HAHB4                    <---------GLK1(2)                      <---------GLK1(2)             <---------YAB1                  --------->LBD16                   <----------DOF2             ----------->GT1                 --------->HSFB2a(2)           <---------ANAC58    --------->ANAC58      --------->ICU4                 <---------HSFB2a(2)           <---------ANAC58    --------->ANAC46 --------->ANAC55(2)              <------ZmHOX2a(2)           <-----------RAV1(1)      --------->ANAC58 <---------ANAC55(2)             --------->ARR14(2)         <---------ANAC46 <---------TOE2(3)     <---------------AtSPL8             <---------ARR14(2)         <---------ANAC58 <---------YAB1     --------->GLK1(2)          --------->MYB46(3)   <----------DOF2 <---------ANAC46 ------>ZmHOX2a(1)  <-------TEIL ====================HOX2a_HOX2a        <---------ANAC58 <---------TOE1(3)<---------AHL20(2)   aggttctatacaaccgatcccagaatctgttaacttttgagttcgtgttgcttacttttaagattcctcaagccatataatctggtacataatcattttt  12477200                                       --------->ANAC46                                      --------->ZAT18                                      <---------ZAT14                                    <---------ZAT18                                        --------->ANAC46                                    <---------ZAT14                                       --------->ZAT18                                    --------->ZAT14                                     --------->ZAT14                                    --------->REM1(2)                                   <---------ZAT18                       <---------AHL20(2)        <---------REM1(1)      --------->AHL20(2)<---------ZAT14         --------->At4g35610     ------>ZmHOX2a(1)                ---------->DOF2      <---------ANAC46         --------->ZAT18       ----------->RAV1(2)            --------->ZAT6  -----------------------   tagtaattgagagctctaaatttagtttatttctcctgtgtacacaattagttgtagcatttgaactctaaagtttaaatttttctcttgtgtacacaat  12477300  Previous    Next  AGI:  At2g29010.1    Description:  pseudogene, receptor protein kinase, contains a protein kinase domain (PS50011); contains a S-locus glycoprotein family domain (PF00954); contains LRR Leucine Rich Repeat domains; blastp match of 42% identity and 3.1e-185 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris} Range:  from: 12472841    to: 12476541    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g29020.1    Description:  Rab5-interacting family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21636.1); contains InterPro domain Rab5-interacting (InterPro:IPR010742) Range:  from: 12476801    to: 12478777    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version