Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <------NtERF2                                                           --------->LBD16                                                           <---------ATERF1(1)                                                           ------>NtERF2                                                          <---------ATERF1(2)                                                          --------->ANAC46                                                          --------->RAP2.6(2)                                                          --------->ATERF1(2)                                                          --------->DEAR3(1)                                                         --------->RAP2.3(1)                                                         <------NtERF2                                                         <---------LBD16                                                         --------->ATERF1(1)                                                        <---------ATERF1(1)                                                        ------>NtERF2                                      --------->ANAC46  <---------RAP2.3(1)                                      --------->ANAC58 <---------ETT(2)                                      --------->ANAC58 <---------DEAR3(1)                                ------>NtERF2          --------->ETT(2)                               --------->LBD16        --------->ATERF1(1)                              <---------ANAC46       <-----------HVH21                  --------->ANAC46 <---------SPL7   <-----------RAV1(1)                 ------->TEIL <---------ANAC58    <---------ZAT2                                 ----     --------->ZAT14          <---------ANAC58    --------->At4g35610                            ----     <---------ZAT18         <---------LBD16      --------->ZAT2 <----------DOF2                 <---     <---------ZAT14      <---------ANAC58        <---------At4g35610                  --------->TOE2(3)  --------->At4g35610     <---------ANAC58       ------>ZmHOX2a(1)                     --------->TOE1(3)   gaagcgctgcactactatgcacccgattgtttgcgggcatacgcactcttcctgctgtcgccggcatcttttcgaaaccctagaaaaaaccttcacaaac  12424100                                                <---------ARR11(3)                                                <---------ARR14(3)                                                --------->ARR11(3)                                                --------->ARR14(3)                                           <---------ATHB12                                    ------>MYB83<-----------ARR10                                    --------->MYB52(1)                                    ------>MYB46(1)                                  <---------MYB52(2)                                  <---------MYB46(2)                                  <---------MYB59                                  <---------MYB111(1)                                      --------->AHL20(2)                                 <---------ANAC55(2)                                       --------->YAB1                                 --------->ANAC55(2)                                  ------->GAMYB       --------->MYB52(1)      <-----------GT1  --------->ARR14(2)                  --------->ANAC58 ----->TOE2(3)             <---------WOX13(1)   <---------ARR14(2)                  --------->ANAC58 ----->TOE1(3)           --------->ATHB12------>MYB46(1)                        <-----------GT1 ------MYB59           <---------WOX13(1)------>MYB83                  --------->ANAC46   <---------ATHB12   ctaaaccaataacagagaaatatagattgattaatacctaaccaaatcaatatcttctccaaaatacaattacacagaaatttcacaacccaatgaaatt  12424200                                                                                  ===================                                                                                  ------>ZmHOX2a(1)                                                                                  ===================                                                                                 --------->TOE2(3)                                                                                ------>ZmHOX2a(2)                                                                                =====================                                          ---------->DOF2                      <------ZmHOX2a(2)                                     --------->YAB1                           <---------ARR14(2)                                    <---------ATHB12                          <---------ARR11(3)                           --------->ANAC58                                   --------->ARR14(2)             --------->GLK1(1)  <---------ALFIN1                              --------->ARR11(3)        <---------At4g35610--------->ANAC58                                 ----------->ARR10        --------->At4g35610--------->ANAC46  --------->At4g35610    ---------->DOF2       ---------->DOF2   acccagattaagctgaaatctagggtttcaagccccaaatcatcaaaagctcacatactaatttgccgattaaagggatagatcctaaatgtgaaagaaa  12424300                     <---------ATHB12           <---------TOE1(2)          ======================HOX2a_HOX2a          ------>ZmHOX2a(1)        ===========================HOX2a_HOX2a        ------>ZmHOX2a(2)       ============================HOX2a_HOX2a       <------ZmHOX2a(2)      --------->ARR14(2)      --------->ARR11(3)      <---------ARR14(2)      <---------ARR11(3)     <---------GLK1(1)                                    <---------MYB59                    <-------     --------->GLK1(1)             ---------->DOF2       --------->ANAC55(2)               --------->MYB52(1) =============HOX2a_HOX2a<------ZmHOX2a(2)               ----------->RAV1(2)              ----------- ==============HOX2a_HOX2a   ---------->DOF2----------->GT1                        <------ZmHOX2a(1) ================HOX2a_HOX2a------>ZmHOX2a(1)          <-----------GT1         <---------MYB52(1)   aactcagagatcctagggttccaatcgatcctaaagagaaagagaagagtaaatagtttacctgattcgagtgaaggaatcgttaggaagaagcgacgga  12424400                                                               --------->ATHB12               <------                                                              *TSS                           --------                   <-------TEIL               <----------CDC5 --------->ICU4                <--------                ----------->GT1              ----------->RAV1(2)                            ---------               --------->DAG2                <---------At4g35610                       --------->YAB1 --------->CCA1(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->DAG2                <---------AHL20(2) --ANAC46      <---------------AtSPL8        --------->At4g35610<------------CBF      <---------YAB1 >HVH21      ---------->DOF2      --------->ANAC46     ---------->DOF2          ----------->GT1  ----   gagagatggatgaagaaaaggttcaaactttgttcttcgccaatggcctctgaggcaaaaaggaaagattggaaagtctcgagggtatattataaagatt  12424500                        <----------DOF2                   <---------MYB52(1)                                                            <---                  <----------DOF2                                                              ------             ------->GAMYB                                                                     ------             --------->DEAR3(1)                 ------>ZmHOX2a(1)                              <-----            --------->DEAR3(2)              --------->ARR14(2)                                 ------ ------CBF  --------->MYB46(3)              <---------ARR14(2)         <---------YAB1          <----- ->ATHB12   --------->ATERF1(1)            <---------CCA1(2)           --------->ICU4        <------- -YAB1    <---------ARR14(2)             --------->AHL20(2)          <---------ICU4   <---------ANAC55(2) >ICU4    --------->ARR14(2)             <---------AHL20(2)         <---------YAB1    --------->ANAC55(2) ------->GT1<------------AtMYB77   <-----------GT1       <---------ANAC46         <-----------HVH21   gggaaatagttggaaccgccctttagcttttgttattttacatttatatcctccaaattttgtgtatttcatcatttttagttttgtcacataattcggc  12424600        <------NtERF2      <---------RAP2.3(3)     --------->ZAT2                                                                  --------->YAB1     <---------ZAT2                                                           --------->YAB1 ------ATERF1(1)                                                      --------->At4g35610 --->At4g35610                                                        <---------At4g35610 ----->RAV1(2)                                                     <---------At5g28300 ----ZAT2 <-------GAMYB     --------->ALFIN1                      <-----------GT1 --------->WOX13(1) --->ZAT2<---------ANAC46   <---------ATERF1(1)              <----------DOF2 --------->ICU4 ----At4g35610      --------->ARR14(2)                     ---------->ID1    <---------ATHB12 --RAP2.6(2)        <---------ARR14(2)     ----------->GT1<-----------GT1  --------->YAB1    --------   tgggcctggctgcgttgagagggatttgggctgggcctggctgagtagttaatatgtgtttttcttttttactgctgtaatcatccatcatcaaatagta  12424700                                                                                              -------                                                                                              <------                                                      <---------AHL20(2)                      <------                                               --------->TOE2(3)      <---------ANAC46        -------                                              --------->At4g35610--------->MYB52(2)        --------->YAB1                                          <----------DOF2      <---------MYB52(1)<---------ICU4    -- ->YAB1          --------->LBD16      <---------LBD16 --------->AHL20(2)<---------ZAT6    --------->AHL20(2)   actgaaacaaaaaaaactccagataaaaaacaaacaaaactgcgcattagcttaatttaaatttagttagttttgtgttatcttcatgacaaataataaa  12424800                                                              --------->KAN4(2)                                                              <---------ARR14(2)                                                             --------->KAN4(1)                                                             --------->HSFB2a(1)                                                             <---------KAN4(1)                                                             <---------HSFB2a(1)                                                <---------AHL20(2)                   ----------->RAV1(1)                                                <---------YAB1--------->ARR14(2)     <---------ALFIN1                                                --------->AHL20(2)                 ------>NtERF2                                               <---------AHL20(2)    ------>ZmHOX2a(1) <---------ALFIN1                                               --------->AHL20(2)<-----------GT1   --------->LBD16           --------->YAB1               <-----------GT1      <----------TaMYB80   --------->ANAC58 -->AHL20(1)                      ------------>CBF          ---------->TaMYB80    --------->ANAC46 ---AHL20(1)                 <-----------GT1  --------->YAB1--------->ARR14(2)    --------->ANAC58 ---AHL20(2)             --------->ATHB12------------>CBF   <---------ARR14(2)   <---------LBD16  --- -->AHL20(2) <---------CCA1(2) --------->MYB46(3)           <---------KAN4(2) ------>ZmHOX2a(1) <---- ------->AHL20(2)       <---------YAB1<---------ATHB12--------->At4g35610   <---------ICU4   ------>ZmHOX2a(1)   atgaaataaaaactcataacttgtttatgattaacctccaattaacaattttaattagctcgaatattctcctcttaatccttcccgccacattcctctc  12424900                    <---------MYB52(1)                  <---------ANAC58                  <---------ANAC58                  ----------->GT1                                --------->ZAT6     --------->YAB1--------->TOE2(3)                           <-----------GT1 ------>LBD16     <---------ANAC46                      --------->YAB1              --------->AHL20(2) -----LBD16   <------------CBF    <-----------GT1       ----------->GT1--------->YAB1   cgcataactataactaaattgcgttaattcagtttttcaccagttcatcacacactaatcgtaattaacactataacaaaaaaaaaaaaaatccatattt  12425000  Previous    Next  AGI:  At2g28910.1    Description:  CXIP4 (CAX INTERACTING PROTEIN 4); nucleic acid binding / zinc ion binding. Identical to CAX-interacting protein 4 (CXIP4) [Arabidopsis Thaliana] (GB:Q84Y18;GB:Q8L8W3;GB:Q9ZV23); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ71503.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 12422857    to: 12424462    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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