Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->LBD16                  <---------GLK1(1)                  --------->CCA1(2)                  <XXXXXXXXXXXXXXXXXXXXMIR171A                 <---------ARR14(2)       <---------AHL20(2)                                      ---------->DOF2    ------>ZmHOX2a(2) <---------ANAC58                     <----------ID1   <------ZmHOX2a(2)  --------->ANAC46                   ---------->DOF2                            -  <---------ARR11(3)  <---------ANAC58                 --------->YAB1                       <--------  --------->ARR11(3) <---------LBD16                   <---------AHL20(2)                  <---------LBD16  <---------AGP1 --------->ARR14(2)                 --------->YAB1                  <---------ANAC55(2)  --------->AGP1 <---------GLK1(2)                <---------YAB1    ---------->DOF2 --------->ANAC55(2) -----AHL20(2)--------->HSFB2a(2)   --------->TOE2(3)  --------->AHL20(2)         <-----------GT1   -   tatagatcttaaatttcgagatttgcgcgactcgattaacttaaacttgagtattaataaaaagaaaaagaaaagcttagagtattacatattgacggga  12346400           <---------SPL7  --------->WRKY12                                  --------->ANAC46   <---------GLK1(1)       --------->WRKY45                                  --------->ANAC58  --------->ARR11(3)       --------->WRKY38(1)                      --------->ATHB51        <--------  <---------ARR11(3)      --------->DOF5.7(2)                       <---------ICU4          --------- ---------->ARR10         <---------MYB52(1)         --------------->AtSPL8  --------->ANAC58  <----- -ANAC46  --------->DEAR3(1)           <---------ZAT18           --------->YAB1             --------- -------->MYB59<------ZmHOX2a(1)       --------->ZAT18          <---------YAB1          --------->HSFB2a(2)   gttagatattcgccgtaggaatcgaaccgttgacttgatattgcgctaaacgaatatcgcaccattttcataatttcattcgcaatttgtcgagaatatg  12346500                                                                    <-----------GT1                                                                  <---------AHL20(2)                                                             <---------AHL20(2)                                                        <---------AHL20(2)                  ---------                                                      <---------RVE1(1)                <-------TEIL                                                      <---------CCA1(1)               --------->ALFIN1    <----------DOF2              >>>>>>>>>>GT-3b     <---------ARR11(3)              --------->TOE1(2) -ARR14(2)                    --------->ANAC58       --------->ARR11(3)            --------->DAG2 >ARR14(2)                    --------->ANAC58       <---------GLK1(2) <---------------AGL15<-------- ----YAB1          <---------AHL20(2)               <---------RVE1(1)  --------------->AGL15<-------- >GLK1(2)<---------GLK1(1)    --------->ANAC46 ---------->DOF2<---------AHL20(2) ---------->DOF2<----   atttttctttgatttcagtgtttatttgttccaagaaaaatataaaactaaaagagatttttttttattttaacttgaaatagaaaaggtgcgagatttt  12346600      <------------MYB.PH3(2) >ARR11(3)                                                               <------ZmHOX2a(1) -GLK1(2)                                                               ----------->GT1 -ARR11(3)              <---------ZAT6        --------->AHL20(2) <---------GLK1(2)         <---------DAG2 -------GT1<----------DOF2            --------->AHL20(2)<-------TEIL    <----------ID1     <---------   gctatctgactaacttttaaaaatgagtgtaaacatcgaataaaaaaaaaaaatgacattcatttcagaatattaggaaaaaaaaaacataaacttttcg  12346700                                                                               ------------>CBF                                                                             <---------WRKY18(1)    -                                                                            --------->WRKY12      ---                                                                            --------->WRKY45     ----                           ----------->GT1                                  --------->WRKY38(1)  ----                         --------->CCA1(2)                                 --------->DOF5.7(2)  -----             ---------->DOF2                           <---------YAB1     <-------GAMYB        ------            <---------AHL20(2)                     ----------->GT1       <---------MYB46(3)<---------AHL20(2)        --------------->AGL15             --------->YAB1         ---------->DOF2          <---------AHL20(2) -DOF2  <---------------AGL15            ----------->TBP ---------->DOF2 <---------ANAC46 --------->AHL20(2)   aaatagcttagtatataaagaaattagatatgaaaaaaaaactataaaaaatagagtattaaagtcttaaagttgtcgttgaccaatacgaattaaataa  12346800                                                                xxxxxxxxxxxxxxx>smallRNA(le3)                                                      <-------MYC3                                                      ------->MYC3                                                     <---------O2xxxxxxxxxxxxxxx>smallRNA(le3)                                                     --------->O2xxxxxxxxxxxxxxxxx>smallRNA(le3)                                              <---------GLK1(2) xxxxxxxxxxxxxxxx>smallRNA(le3)                                        <---------MYB46(3)      --------->ALFIN1                                   --------->ZAT14  <---------TOE1(2)                                   <---------ZAT14 <---------ALFIN1                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxx>smallRNA(i)    <---------ANAC58                              xxxxxxxxxxxxxxxx>smallRNA(s)    <---------ANAC46                   <---                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            <------                              xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       ---------                              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <--------                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          ---------                              xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                <---------At4g35610                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------PCF2--------->ARR14(2)                              xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------ARR14(2)                              xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxx>smallRNA(si3)   ---------->DOF2            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ZAT2   <---------ZAT2  <---------ATHB12            xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ZAT2xxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC58            xxxxxxxxxxxxxxxx>smallRNA(s)     <---------ANAC58  xxxxxxxxxxxxxxxx>smallRNA(s) --------->ANAC58           *TSSxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ARR14(2)--------->At4g35610 -------->WOX13(1)          xxxxxxxxxxxxxxxx>smallRNA(s)  <---------RAP2.6(2) xxxxxxxxxxxxxxxx>smallRNA(s) --------->CBF              xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxx>smallRNA(le3) --------->ANAC46 ----->ANAC58            --------->ALFIN1   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i) ----->ANAC58         --------->DAG2 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)----------->RAV1(2)--------->RAP2.6(2) ---->DAG2           ---------->DOF2xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ARR14(2)--------->ZAT2 ---->DOF2       --------->YAB1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxx>smallRNA(le3)  <---   agcaatcaagcgaaatcaaacataaaagtggctgtagtttagtggttagaatcccacgttgtggccgtggggacctgggctcgaatcccagcagccacac  12346900                              <-----------GT1                                       <-----------GT1 ------DAG2                  <-----------GT1                                    --------->AHL20(2) ---ALFIN1                  <---------AHL20(2)                                 <---------YAB1 -->RAV1(1)               <---------YAB1                                     --------->YAB1 -ALFIN1                 <---------AHL20(2)                  ---------->DOF2--------->AHL20(2)      - >RAP2.6(2)            <---------AHL20(2)        --------->MYB52(1)       --------->TOE2(3)       <-- -------DOF2    ----------->GT1<---------TOE2(3)<---------WRKY12       ----------->RAV1(1)  <--------   ttttttttttctctaaacttgttatattattttaacatttgaataagaggccaacgaattactcaaagagtcccaacatttattatttactaattttcta  12347000                                          --------->ATHB51                                          --------->ATHB12                           --------->ATHB12                           --------->ATHB51                          <---------YAB1  -------->ATHB1                        --------->ANAC46 <---------YAB1                        --------->ANAC55(2)                                  <---------YAB1  <---------DAG2        <---------------AGL15                       ---------->DOF2  <----------DOF2      <-----------------AG                      --------->TOE2(3) ------>TEIL           <-----------------AGL1                    ------->GAMYB -------ZAT18          <-----------------AGL3                   --------->MYB46(3) <------ZmHOX2a(1)- ---GT1       --------->ZAT14<---------WOX13(1)       <-----------GT1    --------->TOE2(3)     ------   tgcactttttagactcttcagtcttcacataattggtattggtattattggtatataaaccggttaaccacaaagccttattacaggaacaaaaaaaaaa  12347100                                              <---------MYB46(3)                                              <-----------RAV1(1)       <---------YAB1                                       --------->bZIP60(2)            --------->YAB1                                       --------->ANAC58           --------->AHL20(2)                                       --------->ANAC46           --------->AHL20(1)                                       --------->ANAC55(1)        <---------AHL20(2)                          ----------------------->TaNAC69(2)----------->GT1  <---------YAB1    --------->MYB52(1) --------->ANAC58     --------->YAB1        ---------->DOF2 -------->CCA1(2) <---------MYB52(2) <---------ALFIN1  <---------YAB1<---------YAB1        ------->TEIL ---->DOF2     <----------ID1   <----------DOF2 ---------->ID1    <---------AHL20(1)<---------MYB52(2)   agagatgataaaccaaaaaaacaaacgttttcgtctttcacacgccatttgttgtttatcaatggtaaaatattatcatttatacaaagaacgtattttg  12347200                                      <---------YAB1                                   <-----------GT1                                <---------ARR11(3)         --------->AtLEC2       <---------GLK1(2)         --------->ANAC58       <---------ARR14(2)         --------->ANAC58       --------->ARR14(2)     ------>ZmHOX2a(2)          --------->ARR11(3)     =================================HOX2a_HOX2a    <------ZmHOX2a(2)          <------ZmHOX2a(1)                  ------>ZmHOX2a(1)    ==================================HOX2a_HOX2a          ------->GAMYB                            -   <---------ARR11(3)    <----------DOF2                <-----------GT1                             -   --------->ARR11(3)   <---------ANAC58             <----------DOF2           <---------CCA1(2)    -  --------->GLK1(1)     <---------ANAC46       <---------ALFIN1  --------->TOE2(3) <----------DOF2<--  <---------GLK1(1)     <---------ANAC58   --------->ZAT18--------->MYB46(3)   ---------->ID1    <---   caagagatctcatgcaagttaacatggcttgaaggattttccgattgcacaacctctttaaccatctcctcaatctctcttgtctctttcccaattctct  12347300  Previous    Next  AGI:  At2g28770.1    Description:  pre-tRNA. tRNA-His (anticodon: GTG) Range:  from: 12346828    to: 12346899    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g28780.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21693.1) Range:  from: 12347111    to: 12350498    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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