Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             ------------>CBF                                           --------->ANAC46        <---------YAB1                      --------->GLK1(2)  --------->ANAC58         <---------------------WRI1 ------->GT1          --------->ARR11(3) --------->ANAC46       --------->ICU4 -------CBF           <---------ARR11(3) --------->ANAC58     --------->YAB1 -HVH21     <---------MYB52(2)<-----------GT1              --------->HSFB2a(2)   tgtataatcccaaaactaactcaaaatctttttaacttcacacacacaaaactaaacacttctataattttgattctttcaatggaaccaattcttgaaa  12335700                                                                   <----------DOF2                ----------->ARR10                                 <---------ANAC46                --------->HSFB2a(1)                               <---------ANAC58                <---------HSFB2a(1)                               <---------ANAC58             <-----         ------->MYC3                                  <---------ICU4                        <-------         <-------MYC3                                  -------->HAHB4                        <-------      <---------ALFIN1                                 --------->YAB1                --------->LBD16     <---------REM1(2)            ----------->RAV1(1) <---------ATHB12              <---------ANAC46 --------->TOE1(3)--------->ARR11(3)                  --------->ICU4               <---------LBD16 --------->TOE2(3)<---------ARR11(3)               ------>ZmHOX2a(1)       --------->ATHB12  <-------   aaacctcaacacgttgggaagttcttgttcaaacagcaacatggacaattctcctaatgatcacagtggctttggcttcatttgctccggagatggcgtt  12335800                                     <---------ARR14(2)                                     --------->ARR14(2)                     <------NtERF2                                     <---------GLK1(1)         --------->TOE2(3)                                <---------MYB52(1)            ----------->GT1                               <-------GAMYB           --------->LBD16     <---------RAP2.6(3)                       <---------MYB52(1)             --------->LBD16      ------>NtERF2        --------->AHL20(2)    --------->MYB52(2)    <---------LBD16        <-----------HVH21 --GAMYB<---------AHL20(2)    <---------MYB46(3)   <---------At5g28300     <-----------TGA1 --ANAC58       --------->At4g35610 <------ZmHOX2a(1)<---------LBD16      --------->ATERF1(2) --ANAC58       <---------At4g35610<---------YAB1 <-----------GT1         <---------ATERF1(2) --ANAC46---------->DOF2     <-------TEIL       <---------GLK1(1)    <---------ICU4 ----------->GT1   tgtgtcgaaattaaagtcatcttccgatgggttcgttaggattccgatggatttaccgggagaaatgttaatcttgccgtcagaaatggtgaagaattca  12335900                             <---------TOE1(2)                       <---------ARR14(2)                       --------->ARR14(2)                     --------->ARR11(3)                     <---------ARR11(3)                            --------->YAB1                  ------>MYB46(1)             <---------ANAC58    <------ZmHOX2a(2)                  ------>MYB83 <------ZmHOX2a(1)                 --------->ARR11(3)        --------->HSFB2a(2)                 --------->MYB52(1)           <---------ANAC58 <---------YAB1              <---------HSFB2a(2)                --------->TOE2(2)        --------->ATHB12    <-----------GT1             <---------ANAC46                --------->TOE1(2)       <---------YAB1    <---------ICU4                 <---------REM1(1)             <-----------GT1<-----------RAV1(2)         <----------DOF2               --------->ALFIN1   tatttagacgtttttttaccaacgatattcgcaggagttatggtcattgcttctgtttctttattacgatcatgttttggtattgaaggtgttgtagaag  12336000                                                                                                  xxx                                                                                            <--------                                                                                           xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                  ------>ZmHOX2a(1)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                *TSS   xxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     <---------ATHB12  xxxxxxxxxxxxxx                                                                   --------->WOX13(1)<---------At4g35610                                                                  <---------AHL20(2) --------->At4g35610                                                                  --------->AHL20(2)xxxxxxxxxxxxxxxxx                                                              --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxx                                                       <---------WOX13(1)       xxxxxxxxxxxxxxxxxxxxx                                <---------ARR11(1)    <------------CBF          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->YAB1     <---------CCA1(2)    <---------AHL20(2)    --------->YAB1 xxxxxxxxxxxx       ------------>CBF    <-----------HVH21     ------->TEIL <---------AHL20(2)xxxxxxxxxxxxxxxxxx>smallRNA(si3)   aaatcgaagaacaatgttgatgacattttcgtcatatctatgggttatatgtatgtaattgatattaattaatcaataagggtccttagctcagtggtag  12336100              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <------ZmHOX2a(2)            xxxxxxxxxxxxxxxx>smallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->At4g35610           <---------At4g35610        <---------At4g35610        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ZAT14        <---------ZAT14      xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(i)     <---------ZAT18 xxxxxxxxxx>smallRNA(l2)                   --------->ZAT18 xxxxxxx>smallRNA(fl3)                    <---------PCF2 xxxxxxxxxx>smallRNA(l2)                 <------MYB83 xxx>smallRNA(fl3)                      --------->SPL7 xx>smallRNA(se3)                      --------->ALFIN1 xxx>smallRNA(si3)                 <---------LBD16 xx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(i) xx>smallRNA(si3)                xxxxxxxxxxxxxxxx>smallRNA(i) xxx>smallRNA(se3)               --------->ARR14(2) xx>smallRNA(se3)                <---------ARR14(2) xxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xx>smallRNA(fl3)     <---------WRKY12 <--------P xx>smallRNA(fl3)   <-----------HVH21--------->LBD16                                             ---- xxxxxx>smallRNA(fl3)----------->HVH21<---------MYB52(1)                                         <--- xxxxxxxxxx>smallRNA(l2)         --------->GLK1(2)                                               <--- xx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(s)              --------->HSFB2a(2)       <---------At5g28300 xxx>smallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)<----------DOF2            <---------ANAC58  <-------TEIL xx>smallRNA(i2)xxxxxxxxxxxxxxxxxx>smallRNA(se3)   <----------DOF2        <---------ANAC58 <---------MYB52(1) xxxxxxxx>smallRNA(l2)<---------WRKY38(1)<------MYB46(1)     <---------HSFB2a(2)      <-----------GT1   agcaattgactgcagatcaataggtcaccggttcgaatccggtagggccctttcttttttgttttagaaactgttttcttgtttatattaaccgttcatt  12336200                                                    --------->ANAC55(2)                                                    <---------ANAC46                                                    <---------TGA1a                                                    <---------bZIP60(2)                                                    --------->TGA1a                                                    <---------O2                                                    <---------ANAC55(2)                                                    <---------ANAC55(1)                                                    --------->O2          <---------DEAR3(1)                        <---------ANAC58        --------->MYB52(1)                          <---------ANAC58       ----------->HVH21                           ----------->bZIP910(1)       ----------->TGA1                            ----------->STF1      ------>ZmHOX2a(2)                           <---------TGA2(2)     --------->At4g35610                         ----------->HVH21     <---------At4g35610 ----------->GT1         ----------->TGA1    --------->ANAC46 ----->AHL20(2)        ------->TEIL           ------>ZmHOX2a(2)    <-----------GT1              <---- ------AHL20(1)    ------->TEIL       --------->ALFIN1 <-----------HVH21                <-----------GT1 ------AHL20(2) <---------YAB1        <-----------RAV1(1)       <---------GLK1(1)    <---------ICU4   ttatttgatctgacggtgatgaatgtatcgttacaaatatgtgttggatcgatgacgtgtcattagatttcacaaaactctgaataattttcacaacaaa  12336300                                             --------->ANAC58                                             --------->ANAC58                                             --------->ANAC46                                         --------->YAB1                                        <---------YAB1<---------ANAC46                                       --------->AHL20(2)                             --------->TOE2(3)                                 --------->ANAC58     <---------ANAC55(1)             <----------DOF2      <---------STY1(1)          --------->ANAC58  <---------ATHB12                <---------ARR11(3)   --------->ZAT6              <---------AtLEC2  --------->WOX13(1)       ---------->DOF2---------->DOF2 -----GLK1(2)        --------->ICU4    --------->AHL20(1)      ------->TEIL        --------->ARR11(3)   ttcttacactagggaatgcgaaaatgattttttgcaagaaatattataagccaattaagtgtatgaatcttatatataaagctaagaactttaaaacgct  12336400                                            <---------AHL20(2)                                           --------->AHL20(2)             <-----------GT1                           <---------YAB1<----------DOF2        ------>ZmHOX2a(1)                       <---------GLK1(2) --------->TOE1(3)      --------->ICU4                     <-           --------->ARR14(2)            --------->TOE2(3)   ---------->ID1     --------->YAB1   ----   cacattgagtccatatttgtcattcgattcttatacctctaaactttaaattgctcacatttagtccttatttgtttttcaatcttcaaaaacatagttc  12336500                                                                                      <---------YAB1                                 <----------DOF2                                     --------->TOE2(3)          --------->ATHB12       ------>ZmHOX2a(1)                                  <--------HAHB4       <----------DOF2          --------->TOE2(3)                                   --------->YAB1 --------ATHB12          --------->YAB1                    ----------->GT1         <---------YAB1 ----->WOX13(1)        <---------WOX13(1)  ------->TEIL---------->DOF2          --------->ICU4   aatcaattcctttgattagttttcgattgataatcctttaccatgaatttcagagattaaagagtaattagagcaaatggtacttatcattaatccatta  12336600  Previous    Next  AGI:  At2g28725.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G07795.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76818.1) Range:  from: 12335682    to: 12336020    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g28730.1    Description:  pre-tRNA. tRNA-Cys (anticodon: GCA) Range:  from: 12336080    to: 12336151    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g28740.1    Description:  HIS4 (Histone H4). Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59970.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G53730.1); similar to hypothetical protein OsJ_028319 [Oryza sativa (japonica cultivar-group)] (GB:EAZ44836.1); similar to histone 4 [Elaeis guineensis] (GB:ABD62753.1); similar to histone H4 [Hyacinthus orientalis] (GB:AAT08725.1); contains InterPro domain Histone H4; (InterPro:IPR001951); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Range:  from: 12336565    to: 12337072    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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