Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------AtLEC2                                                <----------DOF2                                               <---------DAG2   ------->GAMYB                                            <-----------GT1     --------->TOE1(3)                                      <------------MYB.PH3(1)   --------->TOE2(3)              ----------------->AGL1--------->MYB52(1)        -------->P          ----------->HVH21              ----------------->AG  --------->ARR14(2)        ------>MYB83<-------TEIL ---------ATHB12         <-----------GT1 --------->ARR14(2)   ------>MYB46(1)   --------->At4g35610   aaatcatcgaaccatttccatttgggtttacaatccagtaaccgattcacctttgcattgttccaaccctaaaatgttcattatctgacaatctcatatt  12335300                                                                         <---------ARR11(3)                                                                   <---------ANAC46                                                                ----------->HVH21                         <---------ANAC55(1)                    ----------->TGA1                         <---------ANAC46                     --------->ANAC55(2)                         <---------ANAC55(2)                  <---------ANAC55(2)                    <-------TEIL                              <---------At4g35610          --------->AHL20(2)                                  <---------TGA1a          --------->AHL20(1)                                  --------->At4g35610               <----          <---------AHL20(2)          <---------LBD16         --------->TGA1a                   -----         --------->AHL20(2)   <---------ARR14(2)              --------->O2                      <----         <---------AHL20(2)   --------->ARR14(2)          <-----------HVH21                     -----      <---------AHL20(2) --------->ANAC55(2)             --------->bZIP60(1)                 --------     --------->AHL20(2)  <---------ANAC58                <---------bZIP60(1)       <---------GLK1(2)     <---------AHL20(2)  <---------ANAC58  --------->ARR14(2) <---------O2      <---------WOX13(1)   actaaaattaaataatttgagattcatacgtgtatttgcacacgggttcttctcttgggtcgtcacatgacgcgagttcttaattgattctgaaataata  12335400                                                                                                <----                                                                                                -----                                                                                                <----                                                             <---------ANAC46                  ------                                                             <------MYB46(1)                  -------                                                             <---------ANAC58              --------->YAB1                                                             <---------ANAC58              <---------AHL20(1)                                                            --------->MYB59                <---------ICU4                                            <---------CCA1(1)<---------ANAC55(2)           --------->AHL20(2)                                   --------->MYB52(1)       --------->MYB111(2)            <--------ATHB1      >>>>>>>>>>>>>>>>>LFY         <---------DOF5.7(2)      --------->MYB46(2)             --------->ATHB51     --------->ANAC58           --------->TOE1(3)         <---------MYB52(1)              <---------ATHB12     --------->ANAC58           --------->TOE2(3)     <---------MYB52(1)                  --------->ICU4 -----AHL20(2)                  <----------DOF2<-----------GT1     <---------MYB46(3) ------------>CBF ---->AHL20(1)         ------>ZmHOX2a(1)   <---------ARR14(2)--------->ANAC55(2)   <-----------HVH21< -----AHL20(1)     <---------ARR14(2)      <---------ARR11(3)<------MYB83  ---------->DOF2<---------ATHB51 ---->AHL20(2)     --------->ARR14(2)    <---------MYB46(3) --------->MYB111(1)   --------->LBD16   - ->YAB1  <------------CBF    ------->GAMYB --------->ARR14(2)<---------ANAC55(1)<---------LBD16<-----   aattaagaagccattgtttcgaatcctataactgccttaacggtggatatttctctcttagttaggtgtttgttcattaaaacccggtcacaataatttt  12335500                                        <---------YAB1                                      --------->YAB1                                      --------->AHL20(2)                                     <---------YAB1 <---------AHL20(2)                  --------->ICU4 <---------AHL20(1)              --------->LBD16 --------->AHL20(2)             --------->ANAC46 --------->AHL20(1)             --------->TOE2(3) -----AHL20(2)                  --------->ANAC55(2) ---->AHL20(2)                  <---------ANAC55(2) -----YAB1                      ----------->GT1 --->AHL20(2)                <---------ARR14(2)      --------->AtLEC2 -->YAB1                     --------->ARR14(2)   <-------TEIL                            <---------- ---------AHL20(2)          <---------GLK1(1) --------->DAG2                     <---------ALFIN1---- -------->AHL20(2)       --------->At5g28300 ---------->DOF2<-------MYC3       <---------ALFIN1<----- ----AHL20(2)           ----------->GT1 ----------->TBP     ------->MYC3------>ZmHOX2a(1)--------->ANAC46   aattaaatttgtattaactaagaaaatggtaaatccgtaattataaaaaaagttcatgaaaacgtgtaagagtcctctctcccactcttcttcgtcacat  12335600                                                                           ------------>CBF                                           --------->ANAC46        <---------YAB1                      <---------ARR11(3) --------->ANAC58         <---------------------WRI1 -HVH21               --------->GLK1(2)  --------->ANAC46       --------->ICU4 ------->GT1          --------->ARR11(3) --------->ANAC58     --------->YAB1 -------CBF <---------MYB52(2)<-----------GT1              --------->HSFB2a(2)   tgtataatcccaaaactaactcaaaatctttttaacttcacacacacaaaactaaacacttctataattttgattctttcaatggaaccaattcttgaaa  12335700                                                                   <----------DOF2                <---------HSFB2a(1)                               <---------ANAC58                --------->HSFB2a(1)                               <---------ANAC58                ----------->ARR10                                 <---------ANAC46             <-----         ------->MYC3                                  -------->HAHB4                        <-------         <-------MYC3                                  <---------ICU4                        <-------      <---------ALFIN1                                 --------->YAB1                --------->LBD16     <---------REM1(2)            ----------->RAV1(1) --------->ICU4                <---------ANAC46 --------->TOE2(3)<---------ARR11(3)                  <---------ATHB12             <---------LBD16 --------->TOE1(3)--------->ARR11(3)               ------>ZmHOX2a(1)       --------->ATHB12  <-------   aaacctcaacacgttgggaagttcttgttcaaacagcaacatggacaattctcctaatgatcacagtggctttggcttcatttgctccggagatggcgtt  12335800                                     <---------GLK1(1)                                     --------->ARR14(2)                     <------NtERF2                                     <---------ARR14(2)        --------->TOE2(3)                                <---------MYB52(1)            ----------->GT1                               <-------GAMYB           --------->LBD16     <-----------TGA1                       <---------MYB52(1)             --------->LBD16      <---------RAP2.6(3)        <---------AHL20(2)    <---------MYB46(3)    <---------LBD16        <-----------HVH21 --GAMYB--------->AHL20(2)    --------->MYB52(2)   <---------At5g28300     ------>NtERF2 --ANAC58       --------->At4g35610 <------ZmHOX2a(1)<---------LBD16      --------->ATERF1(2) --ANAC46       <---------At4g35610<---------YAB1 <-----------GT1         <---------ATERF1(2) --ANAC58---------->DOF2     <-------TEIL       <---------GLK1(1)    <---------ICU4 ----------->GT1   tgtgtcgaaattaaagtcatcttccgatgggttcgttaggattccgatggatttaccgggagaaatgttaatcttgccgtcagaaatggtgaagaattca  12335900                             <---------TOE1(2)                       --------->ARR14(2)                       <---------ARR14(2)                     <---------ARR11(3)                     --------->ARR11(3)                            --------->YAB1                  ------>MYB83 <------ZmHOX2a(1)                  <------ZmHOX2a(2)                  ------>MYB46(1)             <---------ANAC58   --------->ARR11(3)        <---------HSFB2a(2)                 --------->MYB52(1)           <---------ANAC58 <---------YAB1              --------->HSFB2a(2)                --------->TOE2(2)        --------->ATHB12    <-----------GT1             <---------REM1(1)                --------->TOE1(2)       <---------YAB1    <---------ICU4                 <---------ANAC46             <-----------GT1<-----------RAV1(2)         <----------DOF2               --------->ALFIN1   tatttagacgtttttttaccaacgatattcgcaggagttatggtcattgcttctgtttctttattacgatcatgttttggtattgaaggtgttgtagaag  12336000                                                                                                  xxx                                                                                            <--------                                                                                           xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                  ------>ZmHOX2a(1)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                     <---------ATHB12  xxxxxxxxxxxxxx                                                                   --------->WOX13(1)  xxxxxxxxxxxxxx                                                                  --------->AHL20(2) --------->At4g35610                                                                  <---------AHL20(2) <---------At4g35610                                                              --------->AHL20(2)*TSSxxxxxxxxxxxxxxxxx                                                       <---------WOX13(1)       xxxxxxxxxxxxxxxxxxxxx                                <---------ARR11(1)    <------------CBF          xxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->YAB1     <---------CCA1(2)    <---------AHL20(2)    --------->YAB1 xxxxxxxxxxxx       ------------>CBF    <-----------HVH21     ------->TEIL <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxx   aaatcgaagaacaatgttgatgacattttcgtcatatctatgggttatatgtatgtaattgatattaattaatcaataagggtccttagctcagtggtag  12336100              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <------ZmHOX2a(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            xxxxxxxxxxxxxxxx>smallRNA(se3)           --------->At4g35610           <---------At4g35610        <---------ZAT14        --------->ZAT14        <---------At4g35610        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ZAT18 xxxxxxxxxx>smallRNA(l2)                   <---------ZAT18 xxxxxxx>smallRNA(fl3)                    <---------PCF2 xxxxxxxx>smallRNA(l2)                   <------MYB46(1) xx>smallRNA(fl3)                       --------->SPL7 xxx>smallRNA(fl3)                     --------->ALFIN1 xxx>smallRNA(si3)                 <---------LBD16 xx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(i) xxx>smallRNA(se3)               --------->GLK1(2) xxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxx>smallRNA(i) xxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xx>smallRNA(fl3)     <---------WRKY38(1)<------MYB83 xx>smallRNA(si3)     <---------WRKY12 <--------P xx>smallRNA(se3)    ----------->HVH21<---------MYB52(1)                                         ---- xx>smallRNA(se3)   <-----------HVH21--------->LBD16                                             <--- xxxxxxxxxx>smallRNA(l2)         <---------ARR14(2)                                              <--- xx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(i)              <---------HSFB2a(2)       <---------At5g28300 xx>smallRNA(i2)xxxxxxxxxxxxxxxxxx>smallRNA(se3)             --------->HSFB2a(2)      <-----------GT1 xxxxxxxxxx>smallRNA(l2)         --------->ARR14(2)<----------DOF2        <---------ANAC58  <-------TEIL xxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(s)<----------DOF2            <---------ANAC58 <---------MYB52(1)   agcaattgactgcagatcaataggtcaccggttcgaatccggtagggccctttcttttttgttttagaaactgttttcttgtttatattaaccgttcatt  12336200  Previous    Next  AGI:  At2g28725.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G07795.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76818.1) Range:  from: 12335682    to: 12336020    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g28730.1    Description:  pre-tRNA. tRNA-Cys (anticodon: GCA) Range:  from: 12336080    to: 12336151    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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