Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <-----------------AGL3 -------->GLK1(2) --------GLK1(2)                                       --------->GLK1(1) ------->ARR14(2)                                     --------->ARR11(3) --------ARR14(2)                                     <---------ARR11(3) ------->ARR11(3)                                 ---------->DOF2                                   < --------ARR11(3)                      --------->AHL20(2)                                           - ------>HSFB2a(1)                      <---------AHL20(2)                                         <-- -------HSFB2a(1)              <-------GAMYB   --------->YAB1                                     <-- -------HSFC1(2)              ----------->GT1 <---------YAB1       <---------ZAT6                 --- ------>HSFC1(2)            <---------ANAC46--------->YAB1     --------->ARR11(3)                <--- ------->ARR10         <---------MYB46(3)  <---------YAB1    <---------TOE2(3)                   <---   agattctccgatttcaaaatttggattgttgagggttacatttttatgatgataaagatttctaagatagtgatcaataaacttacataagtcaagacga  12325400        --------->YAB1     --------->WOX13(1)   <---------YAB1 <---------ICU4 ---------YAB1                                                   --------->ANAC58                <--- -------->ICU4                                                   --------->ANAC58           <-------- ------HAHB4                   --------->ANAC46              --------->ANAC46          <---------AHL20(2) -------ICU4            <---------TOE1(2)      <---------ICU4--------->ANAC58         --------->AHL20(2) ------>YAB1     <---------ARR11(3) --------->ANAC58         --------->ANAC58         <---------AHL20(1) ------YAB1      --------->ARR11(3) --------->ANAC58       ---------->DOF2            <---------AHL20(2) ---ZmHOX2a(2)  <---------GLK1(2)   --------->ANAC46     <----------DOF2------>ZmHOX2a(1)   <--------   tcattatcattcataacaaaatctcccatgttcccaccaagacacttgaacatgacctcctttaagcaagtctccttattttctacaattaatttcttac  12325500  <----------DOF2                                                                                 ---  <---------DAG2                                                           <---------MYB52(1)     <-- <---------ANAC58                                                         ----------->GT1        ---- <---------ANAC58                                                    <---------GLK1(1)          <---- -------DOF2                                              <----------DOF2 --------->LBD16  <---------ANAC58 -ANAC58                                               <-----------GT1  <---------LBD16    <---------ANAC58 -ANAC58  <----------DOF2                 <---------MYB46(3)  <----------DOF2            --------->ARR11(3)   tttgcttttcgacttttgagatgtatagattgagaaattcttcgtggttcaccgatttaactttcttttgggtctccggtaacatctcaaatttcttgat  12325600                                                                      <-------TEIL                                                                    ------->MYC3                                                                    ------->PIF5                                                                    ------->MYC2                                                                    <-------MYC2                                                                    ------->PIF4         --------->DEAR3(1)                                         <-------PIF4      <-----------GT1                                               <-------MYC3 <---------YAB1                                                     <-------PIF5                  --- <---------AHL20(2)                                              <---------ALFIN1                <--- ------>ARR11(3)                    --------->ARR14(2)          <---------ZAT18                  <--- -------ARR11(3)           <---------ALFIN1        <---------ANAC46 <-------MYC4                 ==== ----->YAB1              ----------->RAV1(1)  <---------AtLEC2  --------->ZAT18                 ----- -----YAB1        <---------YAB1    <---------ARR14(2)         --------->RAP2.6(2)              <----   gatattattcacctccgattttgatggccacacatctggatttgagttgaatggattgtagacgaccgcacatgcattaacatcgcataaaaccttgaga  12325700                                                         <---------YAB1                                           <----------DOF2                                          ------>ZmHOX2a(2)                                          ==============HOX2a_HOX2a                                         ===============HOX2a_HOX2a                                         <------ZmHOX2a(2)--------->ATHB12                            ------>ZmHOX2a(1)    ------>ZmHOX2a(1)                            =====================HOX2a_HOX2a                            ====================HOX2a_HOX2a ------>ATHB12      =============================HOX2a_HOX2a                              <---------ANAC58 ------YAB1         ------>ZmHOX2a(1)   --------->ARR11(3)--------->YAB1                  <---------ANAC58 ---ZmHOX2a(2)      ============================HOX2a_HOX2a   --------->YAB1            <-----------GT1 ==========================HOX2a_HOX2a  <---------ARR11(3)-------->ATHB1            <---------DAG2 ---->ARR11(3) <---------GLK1(1)   <---------WRKY18(1)   <---------ATHB12           <----------DOF2 -----ARR11(3) --------->GLK1(1) <----------DOF2--------->TOE2(3)                <-----------GT1 ----   tcattgagtttcttcagaaatccttctctcctctgcttgaacgatcttttcctcattctatcattgaaaatgtaagttagatttaacttttttcttgcca  12325800                                       <---------AHL20(1)           --------->AHL20(2)                                       <---------AHL20(2)           <-----------TBP                                       --------->AHL20(1)        -------->HAHB4                               <---------ANAC58                  <---------ICU4                               <---------ANAC46           --------->ANAC58                   --------                               <---------ANAC58           --------->ANAC58            --------->TCP16(2)                               <---------ANAC55(2)      ---------->DOF2              <---------PCF5                               --------->ANAC55(2) <---------At5g28300   ----------->GT1     <-------  --------->ZAT18       <---------TOE2(3)   <---------AHL20(2)  --------->ICU4 --------->AHL20(2)  <---------ZAT14       <---------TOE1(3) <---------AHL20(2)    <---------ATHB12---------->DOF2<-----  --------->ZAT14      *TSS    <---------ANAC55(1)<-----------GT1--------->YAB1<---------AHL20(2) ----->ICU4    <---------AHL20(2)     --------->YAB1 <---------ZAT6<---------YAB1    <---------TCP16(1)   tgactacactagatgatttttttgctatggtttacgtgtattatatttttttttactgtaaagcaaatgattatatagtaattaaagggtccacatatac  12325900                                                                                                 <---                                                                                     <---------AHL20(2)                                                                                     <---------AHL20(1)                                                                                     --------->AHL20(2)                                                                                  --------->AHL20(2)                                             <------ZmHOX2a(1)                    <---------AHL20(1)                                            ----------->GT1                       --------->AHL20(1)<         <---------ANAC58                  --------->MYB59                 --------->YAB1     -------         <---------ANAC58                <<<<<<<<<MYB98   --------->ANAC55(2)    <---------AHL20(2) < ->ARR14(2)                       --------->ZAT6          <---------ANAC55(2)<---------YAB1   <------ --ARR14(2)------>NtERF2      --------->AHL20(2)      <---------ANAC58    <---------YAB1  <---------AHL20(2) --TEIL <---------At4g35610   <---------AHL20(2)      <---------ANAC58  --------->YAB1   --------->AHL20(2)   gttgtcattttgctggctatttgactacaaattttaatactaagttaggataaatttcttacttaatacatcattcatgataaatattttatttaatata  12326000           --------->ATHB12           <--------HAHB4           --------->ATHB51           -------->HAHB4           <---------ICU4           --------->YAB1           <---------AHL20(2)           -------->ATHB1          --------->ICU4          <---------YAB1          <---------ATHB51        --------->YAB1        <---------ICU4       <---------YAB1       --------->ICU4                                            --------->AHL20(1)     --------->YAB1                                              <---------AHL20(2)    <---------YAB1                                               <---------AHL20(1) --------GT1                                                    <---------AHL20(2) ---------DAG2                 <-------TEIL <---------MYB46(3)  --------->AHL20(2) -->ARR11(3)                  --------->AtLEC2                  --------->YAB1 ----------DOF2             --------->At4g35610  <---------TOE1(3)       <---------YAB1 ---AHL20(1)                <---------At4g35610  <---------TOE2(3)    <---------AHL20(2)           <-   tactttatgataattattagcatattggtgagatgcaaagttttatttgttgaggttaagttcaaattatattttaaaattgtatatgttcacattagta  12326100                                                             <------ZmHOX2a(1)                       <---------AHL20(2)                   ----------->GT1                       <---------YAB1                      --------->MYB59  ----------->RAV1(1)                   --------->AHL20(2)                    <--------P       --------->MYB46(3)         <---------ANAC58                     ======================HOX2a_HOX2a         <---------ANAC58                     ------>ZmHOX2a(2)     --------->YAB1         <---------ANAC46              <------ZmHOX2a(1)<-------GAMYB  --------->YAB1--------->YAB1 ----------GT1     <---------AHL20(2)  ==============HOX2a_HOX2a --------->YAB1     <---------YAB1   tttacaatatggtgtgtctatttttttaattgtagatggaaggagtgatccaagatggggttaggaaaaataatcatccaccagttatcaaaaaaaaaaa  12326200               <---------ALFIN1              --------->MYB46(3)             ----------->RAV1(1)            --------->ANAC46            <---------ALFIN1           --------->LBD16                         --------->MYB46(3)          --------->ANAC46                       --------->MYB52(1)                               <--       --------->ARR14(2)                       ---------->CDC5                               <------       <---------ARR14(2)                     --------->TOE2(3)         ---------->DOF2    <---------YAB1       --------->GLK1(2)                   --------->ANAC58  <----------DOF2             <---------ICU4      <---------GLK1(2)                    --------->ANAC58 <---------ANAC58            --------->ICU4 --------->MYB52(1)                   ----------->HVH21     <---------ANAC58            <---------YAB1   aaaaaacagaatccgcaccactgaaggaacataatatggactgacaagcctcaacggctatggcttttgagtttgaaagggaacaatgtgatgattatac  12326300  Previous    Next  AGI:  At2g28700.1    Description:  AGL46; DNA binding / transcription factor. similar to MADS-box protein (AGL45) [Arabidopsis thaliana] (TAIR:AT3G05860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17341.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 12324243    to: 12325823    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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